data_4Y8W # _model_server_result.job_id gdZZfZMFaahoI2zV0YKB0w _model_server_result.datetime_utc '2024-12-02 20:18:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":601}' # _entry.id 4Y8W # _exptl.entry_id 4Y8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.11 _cell.angle_gamma 90 _cell.entry_id 4Y8W _cell.length_a 150.383 _cell.length_b 86.86 _cell.length_c 108.923 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,N 1 1 B,H,I,J,O 2 1 C,K,L,M,P 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 H N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D S SO4 . A SO4 601 1_555 E O2 SO4 . A SO4 602 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 D S SO4 . A SO4 601 1_555 E O4 SO4 . A SO4 602 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? covale ? covale3 D S SO4 . A SO4 601 1_555 E O3 SO4 . A SO4 602 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.66 ? covale ? covale4 D O2 SO4 . A SO4 601 1_555 E S SO4 . A SO4 602 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale5 D O3 SO4 . A SO4 601 1_555 E S SO4 . A SO4 602 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.668 ? covale ? covale6 D O4 SO4 . A SO4 601 1_555 E S SO4 . A SO4 602 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.578 ? metalc ? metalc1 A SG CYS 410 A CYS 429 1_555 F FE HEM . A HEM 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc2 B SG CYS 410 B CYS 429 1_555 I FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc3 C SG CYS 410 C CYS 429 1_555 L FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 372 n n S O2 SO4 doub 373 n n S O3 SO4 sing 374 n n S O4 SO4 sing 375 n n # _atom_sites.entry_id 4Y8W _atom_sites.fract_transf_matrix[1][1] 0.00665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001427 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 601 3 SO4 SO4 . E 2 SO4 A 1 602 4 SO4 SO4 . F 3 HEM A 1 603 500 HEM HEM . G 4 STR A 1 604 501 STR STR . H 2 SO4 B 1 601 2 SO4 SO4 . I 3 HEM B 1 602 500 HEM HEM . J 4 STR B 1 603 501 STR STR . K 2 SO4 C 1 601 1 SO4 SO4 . L 3 HEM C 1 602 500 HEM HEM . M 4 STR C 1 603 501 STR STR . N 5 HOH A 1 701 39 HOH HOH . N 5 HOH A 2 702 56 HOH HOH . N 5 HOH A 3 703 73 HOH HOH . N 5 HOH A 4 704 69 HOH HOH . N 5 HOH A 5 705 70 HOH HOH . N 5 HOH A 6 706 29 HOH HOH . N 5 HOH A 7 707 45 HOH HOH . N 5 HOH A 8 708 32 HOH HOH . N 5 HOH A 9 709 55 HOH HOH . N 5 HOH A 10 710 21 HOH HOH . N 5 HOH A 11 711 2 HOH HOH . N 5 HOH A 12 712 42 HOH HOH . N 5 HOH A 13 713 72 HOH HOH . N 5 HOH A 14 714 68 HOH HOH . N 5 HOH A 15 715 4 HOH HOH . N 5 HOH A 16 716 1 HOH HOH . N 5 HOH A 17 717 81 HOH HOH . N 5 HOH A 18 718 51 HOH HOH . N 5 HOH A 19 719 71 HOH HOH . N 5 HOH A 20 720 3 HOH HOH . N 5 HOH A 21 721 40 HOH HOH . N 5 HOH A 22 722 54 HOH HOH . O 5 HOH B 1 701 37 HOH HOH . O 5 HOH B 2 702 64 HOH HOH . O 5 HOH B 3 703 67 HOH HOH . O 5 HOH B 4 704 47 HOH HOH . O 5 HOH B 5 705 65 HOH HOH . O 5 HOH B 6 706 49 HOH HOH . O 5 HOH B 7 707 36 HOH HOH . O 5 HOH B 8 708 80 HOH HOH . O 5 HOH B 9 709 50 HOH HOH . O 5 HOH B 10 710 22 HOH HOH . O 5 HOH B 11 711 44 HOH HOH . O 5 HOH B 12 712 43 HOH HOH . O 5 HOH B 13 713 62 HOH HOH . O 5 HOH B 14 714 79 HOH HOH . O 5 HOH B 15 715 31 HOH HOH . O 5 HOH B 16 716 66 HOH HOH . O 5 HOH B 17 717 20 HOH HOH . O 5 HOH B 18 718 24 HOH HOH . O 5 HOH B 19 719 25 HOH HOH . O 5 HOH B 20 720 19 HOH HOH . O 5 HOH B 21 721 61 HOH HOH . O 5 HOH B 22 722 26 HOH HOH . O 5 HOH B 23 723 38 HOH HOH . O 5 HOH B 24 724 63 HOH HOH . O 5 HOH B 25 725 30 HOH HOH . P 5 HOH C 1 701 60 HOH HOH . P 5 HOH C 2 702 52 HOH HOH . P 5 HOH C 3 703 11 HOH HOH . P 5 HOH C 4 704 59 HOH HOH . P 5 HOH C 5 705 7 HOH HOH . P 5 HOH C 6 706 77 HOH HOH . P 5 HOH C 7 707 34 HOH HOH . P 5 HOH C 8 708 41 HOH HOH . P 5 HOH C 9 709 5 HOH HOH . P 5 HOH C 10 710 74 HOH HOH . P 5 HOH C 11 711 6 HOH HOH . P 5 HOH C 12 712 9 HOH HOH . P 5 HOH C 13 713 14 HOH HOH . P 5 HOH C 14 714 28 HOH HOH . P 5 HOH C 15 715 8 HOH HOH . P 5 HOH C 16 716 78 HOH HOH . P 5 HOH C 17 717 15 HOH HOH . P 5 HOH C 18 718 53 HOH HOH . P 5 HOH C 19 719 13 HOH HOH . P 5 HOH C 20 720 12 HOH HOH . P 5 HOH C 21 721 27 HOH HOH . P 5 HOH C 22 722 75 HOH HOH . P 5 HOH C 23 723 17 HOH HOH . P 5 HOH C 24 724 18 HOH HOH . P 5 HOH C 25 725 58 HOH HOH . P 5 HOH C 26 726 16 HOH HOH . P 5 HOH C 27 727 57 HOH HOH . P 5 HOH C 28 728 46 HOH HOH . P 5 HOH C 29 729 76 HOH HOH . P 5 HOH C 30 730 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . K 2 -59.101 26.224 59.827 1 31.75 ? S SO4 601 C 1 HETATM 2 O O1 SO4 . . . K 2 -58.395 27.325 59.139 1 32.03 ? O1 SO4 601 C 1 HETATM 3 O O2 SO4 . . . K 2 -59.732 25.327 58.834 1 32.45 ? O2 SO4 601 C 1 HETATM 4 O O3 SO4 . . . K 2 -58.126 25.451 60.621 1 31.93 ? O3 SO4 601 C 1 HETATM 5 O O4 SO4 . . . K 2 -60.137 26.793 60.715 1 31.87 ? O4 SO4 601 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #