data_4Y8W # _model_server_result.job_id Gb8bZP6kulSDT-9DCJV55w _model_server_result.datetime_utc '2024-12-02 20:32:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":603}' # _entry.id 4Y8W # _exptl.entry_id 4Y8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.462 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description PROGESTERONE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.11 _cell.angle_gamma 90 _cell.entry_id 4Y8W _cell.length_a 150.383 _cell.length_b 86.86 _cell.length_c 108.923 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,N 1 1 B,H,I,J,O 2 1 C,K,L,M,P 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D S SO4 . A SO4 601 1_555 E O2 SO4 . A SO4 602 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 D S SO4 . A SO4 601 1_555 E O4 SO4 . A SO4 602 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? covale ? covale3 D S SO4 . A SO4 601 1_555 E O3 SO4 . A SO4 602 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.66 ? covale ? covale4 D O2 SO4 . A SO4 601 1_555 E S SO4 . A SO4 602 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale5 D O3 SO4 . A SO4 601 1_555 E S SO4 . A SO4 602 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.668 ? covale ? covale6 D O4 SO4 . A SO4 601 1_555 E S SO4 . A SO4 602 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.578 ? metalc ? metalc1 A SG CYS 410 A CYS 429 1_555 F FE HEM . A HEM 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc2 B SG CYS 410 B CYS 429 1_555 I FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc3 C SG CYS 410 C CYS 429 1_555 L FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id STR _chem_comp.mon_nstd_flag . _chem_comp.name PROGESTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 STR sing 376 n n C1 C10 STR sing 377 n n C1 H11 STR sing 378 n n C1 H12 STR sing 379 n n C2 C3 STR sing 380 n n C2 H21 STR sing 381 n n C2 H22 STR sing 382 n n C3 O3 STR doub 383 n n C3 C4 STR sing 384 n n C4 C5 STR doub 385 n n C4 H4 STR sing 386 n n C5 C6 STR sing 387 n n C5 C10 STR sing 388 n n C6 C7 STR sing 389 n n C6 H61 STR sing 390 n n C6 H62 STR sing 391 n n C7 C8 STR sing 392 n n C7 H71 STR sing 393 n n C7 H72 STR sing 394 n n C8 C9 STR sing 395 n n C8 C14 STR sing 396 n n C8 H8 STR sing 397 n n C9 C10 STR sing 398 n n C9 C11 STR sing 399 n n C9 H9 STR sing 400 n n C10 C19 STR sing 401 n n C11 C12 STR sing 402 n n C11 H111 STR sing 403 n n C11 H112 STR sing 404 n n C12 C13 STR sing 405 n n C12 H121 STR sing 406 n n C12 H122 STR sing 407 n n C13 C14 STR sing 408 n n C13 C17 STR sing 409 n n C13 C18 STR sing 410 n n C14 C15 STR sing 411 n n C14 H14 STR sing 412 n n C15 C16 STR sing 413 n n C15 H151 STR sing 414 n n C15 H152 STR sing 415 n n C16 C17 STR sing 416 n n C16 H161 STR sing 417 n n C16 H162 STR sing 418 n n C17 C20 STR sing 419 n n C17 H17 STR sing 420 n n C18 H181 STR sing 421 n n C18 H182 STR sing 422 n n C18 H183 STR sing 423 n n C19 H191 STR sing 424 n n C19 H192 STR sing 425 n n C19 H193 STR sing 426 n n C20 O20 STR doub 427 n n C20 C21 STR sing 428 n n C21 H211 STR sing 429 n n C21 H212 STR sing 430 n n C21 H213 STR sing 431 n n # _atom_sites.entry_id 4Y8W _atom_sites.fract_transf_matrix[1][1] 0.00665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001427 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 601 3 SO4 SO4 . E 2 SO4 A 1 602 4 SO4 SO4 . F 3 HEM A 1 603 500 HEM HEM . G 4 STR A 1 604 501 STR STR . H 2 SO4 B 1 601 2 SO4 SO4 . I 3 HEM B 1 602 500 HEM HEM . J 4 STR B 1 603 501 STR STR . K 2 SO4 C 1 601 1 SO4 SO4 . L 3 HEM C 1 602 500 HEM HEM . M 4 STR C 1 603 501 STR STR . N 5 HOH A 1 701 39 HOH HOH . N 5 HOH A 2 702 56 HOH HOH . N 5 HOH A 3 703 73 HOH HOH . N 5 HOH A 4 704 69 HOH HOH . N 5 HOH A 5 705 70 HOH HOH . N 5 HOH A 6 706 29 HOH HOH . N 5 HOH A 7 707 45 HOH HOH . N 5 HOH A 8 708 32 HOH HOH . N 5 HOH A 9 709 55 HOH HOH . N 5 HOH A 10 710 21 HOH HOH . N 5 HOH A 11 711 2 HOH HOH . N 5 HOH A 12 712 42 HOH HOH . N 5 HOH A 13 713 72 HOH HOH . N 5 HOH A 14 714 68 HOH HOH . N 5 HOH A 15 715 4 HOH HOH . N 5 HOH A 16 716 1 HOH HOH . N 5 HOH A 17 717 81 HOH HOH . N 5 HOH A 18 718 51 HOH HOH . N 5 HOH A 19 719 71 HOH HOH . N 5 HOH A 20 720 3 HOH HOH . N 5 HOH A 21 721 40 HOH HOH . N 5 HOH A 22 722 54 HOH HOH . O 5 HOH B 1 701 37 HOH HOH . O 5 HOH B 2 702 64 HOH HOH . O 5 HOH B 3 703 67 HOH HOH . O 5 HOH B 4 704 47 HOH HOH . O 5 HOH B 5 705 65 HOH HOH . O 5 HOH B 6 706 49 HOH HOH . O 5 HOH B 7 707 36 HOH HOH . O 5 HOH B 8 708 80 HOH HOH . O 5 HOH B 9 709 50 HOH HOH . O 5 HOH B 10 710 22 HOH HOH . O 5 HOH B 11 711 44 HOH HOH . O 5 HOH B 12 712 43 HOH HOH . O 5 HOH B 13 713 62 HOH HOH . O 5 HOH B 14 714 79 HOH HOH . O 5 HOH B 15 715 31 HOH HOH . O 5 HOH B 16 716 66 HOH HOH . O 5 HOH B 17 717 20 HOH HOH . O 5 HOH B 18 718 24 HOH HOH . O 5 HOH B 19 719 25 HOH HOH . O 5 HOH B 20 720 19 HOH HOH . O 5 HOH B 21 721 61 HOH HOH . O 5 HOH B 22 722 26 HOH HOH . O 5 HOH B 23 723 38 HOH HOH . O 5 HOH B 24 724 63 HOH HOH . O 5 HOH B 25 725 30 HOH HOH . P 5 HOH C 1 701 60 HOH HOH . P 5 HOH C 2 702 52 HOH HOH . P 5 HOH C 3 703 11 HOH HOH . P 5 HOH C 4 704 59 HOH HOH . P 5 HOH C 5 705 7 HOH HOH . P 5 HOH C 6 706 77 HOH HOH . P 5 HOH C 7 707 34 HOH HOH . P 5 HOH C 8 708 41 HOH HOH . P 5 HOH C 9 709 5 HOH HOH . P 5 HOH C 10 710 74 HOH HOH . P 5 HOH C 11 711 6 HOH HOH . P 5 HOH C 12 712 9 HOH HOH . P 5 HOH C 13 713 14 HOH HOH . P 5 HOH C 14 714 28 HOH HOH . P 5 HOH C 15 715 8 HOH HOH . P 5 HOH C 16 716 78 HOH HOH . P 5 HOH C 17 717 15 HOH HOH . P 5 HOH C 18 718 53 HOH HOH . P 5 HOH C 19 719 13 HOH HOH . P 5 HOH C 20 720 12 HOH HOH . P 5 HOH C 21 721 27 HOH HOH . P 5 HOH C 22 722 75 HOH HOH . P 5 HOH C 23 723 17 HOH HOH . P 5 HOH C 24 724 18 HOH HOH . P 5 HOH C 25 725 58 HOH HOH . P 5 HOH C 26 726 16 HOH HOH . P 5 HOH C 27 727 57 HOH HOH . P 5 HOH C 28 728 46 HOH HOH . P 5 HOH C 29 729 76 HOH HOH . P 5 HOH C 30 730 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STR . . . J 4 -33.91 62.201 31.42 1 30.28 ? C1 STR 603 B 1 HETATM 2 C C2 STR . . . J 4 -34.249 63.62 31.882 1 30.2 ? C2 STR 603 B 1 HETATM 3 C C3 STR . . . J 4 -35.725 63.885 31.715 1 30.34 ? C3 STR 603 B 1 HETATM 4 O O3 STR . . . J 4 -36.131 65.031 31.632 1 30.84 ? O3 STR 603 B 1 HETATM 5 C C4 STR . . . J 4 -36.682 62.759 31.664 1 30.4 ? C4 STR 603 B 1 HETATM 6 C C5 STR . . . J 4 -36.292 61.487 31.876 1 30.12 ? C5 STR 603 B 1 HETATM 7 C C6 STR . . . J 4 -37.392 60.45 32.004 1 30.16 ? C6 STR 603 B 1 HETATM 8 C C7 STR . . . J 4 -37.084 59.286 31.062 1 30.29 ? C7 STR 603 B 1 HETATM 9 C C8 STR . . . J 4 -35.689 58.715 31.333 1 30.38 ? C8 STR 603 B 1 HETATM 10 C C9 STR . . . J 4 -34.592 59.796 31.123 1 30.37 ? C9 STR 603 B 1 HETATM 11 C C10 STR . . . J 4 -34.817 61.084 31.969 1 30.35 ? C10 STR 603 B 1 HETATM 12 C C11 STR . . . J 4 -33.149 59.222 31.191 1 30.48 ? C11 STR 603 B 1 HETATM 13 C C12 STR . . . J 4 -32.924 57.853 30.519 1 30.73 ? C12 STR 603 B 1 HETATM 14 C C13 STR . . . J 4 -34.009 56.829 30.847 1 31.25 ? C13 STR 603 B 1 HETATM 15 C C14 STR . . . J 4 -35.353 57.469 30.495 1 30.71 ? C14 STR 603 B 1 HETATM 16 C C15 STR . . . J 4 -36.375 56.341 30.369 1 31.01 ? C15 STR 603 B 1 HETATM 17 C C16 STR . . . J 4 -35.537 55.144 29.923 1 31.55 ? C16 STR 603 B 1 HETATM 18 C C17 STR . . . J 4 -34.064 55.607 29.918 1 32.19 ? C17 STR 603 B 1 HETATM 19 C C18 STR . . . J 4 -33.862 56.399 32.328 1 31.24 ? C18 STR 603 B 1 HETATM 20 C C19 STR . . . J 4 -34.492 60.864 33.46 1 30.26 ? C19 STR 603 B 1 HETATM 21 C C20 STR . . . J 4 -33.028 54.522 30.174 1 33.5 ? C20 STR 603 B 1 HETATM 22 O O20 STR . . . J 4 -31.839 54.811 30.138 1 35.39 ? O20 STR 603 B 1 HETATM 23 C C21 STR . . . J 4 -33.424 53.096 30.44 1 33.81 ? C21 STR 603 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #