data_4Y8X
#
_model_server_result.job_id            OYI_PHcMNj4GlJ3V7Iu4mA 
_model_server_result.datetime_utc      '2024-12-23 19:07:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4y8x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":311}' 
#
_entry.id    4Y8X 
#
_exptl.entry_id    4Y8X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4Y8X 
_cell.length_a            78.78 
_cell.length_b            78.78 
_cell.length_c            106.32 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Y8X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.908 ? 
disulf ? disulf4 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf5 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 153 n n 
C1 C2 EDO sing 154 n n 
C1 H11 EDO sing 155 n n 
C1 H12 EDO sing 156 n n 
O1 HO1 EDO sing 157 n n 
C2 O2 EDO sing 158 n n 
C2 H21 EDO sing 159 n n 
C2 H22 EDO sing 160 n n 
O2 HO2 EDO sing 161 n n 
#
_atom_sites.entry_id                     4Y8X 
_atom_sites.fract_transf_matrix[1][1]    0.012694 
_atom_sites.fract_transf_matrix[1][2]    0.007329 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014657 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009406 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 4GR A 1 301 1 4GR LG1 . 
C 3 SO4 A 1 302 1 SO4 SO4 . 
D 3 SO4 A 1 303 2 SO4 SO4 . 
E 4 EDO A 1 304 3 EDO EDO . 
F 4 EDO A 1 305 4 EDO EDO . 
G 4 EDO A 1 306 7 EDO EDO . 
H 4 EDO A 1 307 9 EDO EDO . 
I 4 EDO A 1 308 10 EDO EDO . 
J 4 EDO A 1 309 11 EDO EDO . 
K 4 EDO A 1 310 17 EDO EDO . 
L 4 EDO A 1 311 18 EDO EDO . 
M 4 EDO A 1 312 19 EDO EDO . 
N 5 HOH A 1 401 42 HOH HOH . 
N 5 HOH A 2 402 11 HOH HOH . 
N 5 HOH A 3 403 143 HOH HOH . 
N 5 HOH A 4 404 16 HOH HOH . 
N 5 HOH A 5 405 147 HOH HOH . 
N 5 HOH A 6 406 101 HOH HOH . 
N 5 HOH A 7 407 80 HOH HOH . 
N 5 HOH A 8 408 191 HOH HOH . 
N 5 HOH A 9 409 6 HOH HOH . 
N 5 HOH A 10 410 37 HOH HOH . 
N 5 HOH A 11 411 93 HOH HOH . 
N 5 HOH A 12 412 46 HOH HOH . 
N 5 HOH A 13 413 18 HOH HOH . 
N 5 HOH A 14 414 151 HOH HOH . 
N 5 HOH A 15 415 69 HOH HOH . 
N 5 HOH A 16 416 64 HOH HOH . 
N 5 HOH A 17 417 61 HOH HOH . 
N 5 HOH A 18 418 50 HOH HOH . 
N 5 HOH A 19 419 22 HOH HOH . 
N 5 HOH A 20 420 100 HOH HOH . 
N 5 HOH A 21 421 30 HOH HOH . 
N 5 HOH A 22 422 140 HOH HOH . 
N 5 HOH A 23 423 111 HOH HOH . 
N 5 HOH A 24 424 213 HOH HOH . 
N 5 HOH A 25 425 60 HOH HOH . 
N 5 HOH A 26 426 62 HOH HOH . 
N 5 HOH A 27 427 122 HOH HOH . 
N 5 HOH A 28 428 74 HOH HOH . 
N 5 HOH A 29 429 56 HOH HOH . 
N 5 HOH A 30 430 63 HOH HOH . 
N 5 HOH A 31 431 155 HOH HOH . 
N 5 HOH A 32 432 128 HOH HOH . 
N 5 HOH A 33 433 90 HOH HOH . 
N 5 HOH A 34 434 202 HOH HOH . 
N 5 HOH A 35 435 139 HOH HOH . 
N 5 HOH A 36 436 114 HOH HOH . 
N 5 HOH A 37 437 125 HOH HOH . 
N 5 HOH A 38 438 45 HOH HOH . 
N 5 HOH A 39 439 117 HOH HOH . 
N 5 HOH A 40 440 159 HOH HOH . 
N 5 HOH A 41 441 146 HOH HOH . 
N 5 HOH A 42 442 70 HOH HOH . 
N 5 HOH A 43 443 79 HOH HOH . 
N 5 HOH A 44 444 92 HOH HOH . 
N 5 HOH A 45 445 53 HOH HOH . 
N 5 HOH A 46 446 170 HOH HOH . 
N 5 HOH A 47 447 165 HOH HOH . 
N 5 HOH A 48 448 115 HOH HOH . 
N 5 HOH A 49 449 133 HOH HOH . 
N 5 HOH A 50 450 167 HOH HOH . 
N 5 HOH A 51 451 176 HOH HOH . 
N 5 HOH A 52 452 28 HOH HOH . 
N 5 HOH A 53 453 65 HOH HOH . 
N 5 HOH A 54 454 66 HOH HOH . 
N 5 HOH A 55 455 68 HOH HOH . 
N 5 HOH A 56 456 105 HOH HOH . 
N 5 HOH A 57 457 77 HOH HOH . 
N 5 HOH A 58 458 47 HOH HOH . 
N 5 HOH A 59 459 158 HOH HOH . 
N 5 HOH A 60 460 132 HOH HOH . 
N 5 HOH A 61 461 102 HOH HOH . 
N 5 HOH A 62 462 31 HOH HOH . 
N 5 HOH A 63 463 181 HOH HOH . 
N 5 HOH A 64 464 199 HOH HOH . 
N 5 HOH A 65 465 99 HOH HOH . 
N 5 HOH A 66 466 210 HOH HOH . 
N 5 HOH A 67 467 134 HOH HOH . 
N 5 HOH A 68 468 188 HOH HOH . 
N 5 HOH A 69 469 144 HOH HOH . 
N 5 HOH A 70 470 149 HOH HOH . 
N 5 HOH A 71 471 1 HOH HOH . 
N 5 HOH A 72 472 174 HOH HOH . 
N 5 HOH A 73 473 131 HOH HOH . 
N 5 HOH A 74 474 177 HOH HOH . 
N 5 HOH A 75 475 161 HOH HOH . 
N 5 HOH A 76 476 2 HOH HOH . 
N 5 HOH A 77 477 3 HOH HOH . 
N 5 HOH A 78 478 4 HOH HOH . 
N 5 HOH A 79 479 5 HOH HOH . 
N 5 HOH A 80 480 7 HOH HOH . 
N 5 HOH A 81 481 8 HOH HOH . 
N 5 HOH A 82 482 9 HOH HOH . 
N 5 HOH A 83 483 10 HOH HOH . 
N 5 HOH A 84 484 12 HOH HOH . 
N 5 HOH A 85 485 13 HOH HOH . 
N 5 HOH A 86 486 14 HOH HOH . 
N 5 HOH A 87 487 15 HOH HOH . 
N 5 HOH A 88 488 17 HOH HOH . 
N 5 HOH A 89 489 19 HOH HOH . 
N 5 HOH A 90 490 20 HOH HOH . 
N 5 HOH A 91 491 21 HOH HOH . 
N 5 HOH A 92 492 23 HOH HOH . 
N 5 HOH A 93 493 24 HOH HOH . 
N 5 HOH A 94 494 25 HOH HOH . 
N 5 HOH A 95 495 26 HOH HOH . 
N 5 HOH A 96 496 27 HOH HOH . 
N 5 HOH A 97 497 29 HOH HOH . 
N 5 HOH A 98 498 32 HOH HOH . 
N 5 HOH A 99 499 33 HOH HOH . 
N 5 HOH A 100 500 34 HOH HOH . 
N 5 HOH A 101 501 35 HOH HOH . 
N 5 HOH A 102 502 36 HOH HOH . 
N 5 HOH A 103 503 38 HOH HOH . 
N 5 HOH A 104 504 39 HOH HOH . 
N 5 HOH A 105 505 40 HOH HOH . 
N 5 HOH A 106 506 41 HOH HOH . 
N 5 HOH A 107 507 43 HOH HOH . 
N 5 HOH A 108 508 44 HOH HOH . 
N 5 HOH A 109 509 48 HOH HOH . 
N 5 HOH A 110 510 49 HOH HOH . 
N 5 HOH A 111 511 51 HOH HOH . 
N 5 HOH A 112 512 52 HOH HOH . 
N 5 HOH A 113 513 54 HOH HOH . 
N 5 HOH A 114 514 55 HOH HOH . 
N 5 HOH A 115 515 57 HOH HOH . 
N 5 HOH A 116 516 58 HOH HOH . 
N 5 HOH A 117 517 59 HOH HOH . 
N 5 HOH A 118 518 67 HOH HOH . 
N 5 HOH A 119 519 71 HOH HOH . 
N 5 HOH A 120 520 72 HOH HOH . 
N 5 HOH A 121 521 73 HOH HOH . 
N 5 HOH A 122 522 75 HOH HOH . 
N 5 HOH A 123 523 76 HOH HOH . 
N 5 HOH A 124 524 78 HOH HOH . 
N 5 HOH A 125 525 81 HOH HOH . 
N 5 HOH A 126 526 82 HOH HOH . 
N 5 HOH A 127 527 83 HOH HOH . 
N 5 HOH A 128 528 84 HOH HOH . 
N 5 HOH A 129 529 85 HOH HOH . 
N 5 HOH A 130 530 86 HOH HOH . 
N 5 HOH A 131 531 87 HOH HOH . 
N 5 HOH A 132 532 88 HOH HOH . 
N 5 HOH A 133 533 89 HOH HOH . 
N 5 HOH A 134 534 91 HOH HOH . 
N 5 HOH A 135 535 94 HOH HOH . 
N 5 HOH A 136 536 95 HOH HOH . 
N 5 HOH A 137 537 96 HOH HOH . 
N 5 HOH A 138 538 97 HOH HOH . 
N 5 HOH A 139 539 98 HOH HOH . 
N 5 HOH A 140 540 103 HOH HOH . 
N 5 HOH A 141 541 104 HOH HOH . 
N 5 HOH A 142 542 106 HOH HOH . 
N 5 HOH A 143 543 107 HOH HOH . 
N 5 HOH A 144 544 108 HOH HOH . 
N 5 HOH A 145 545 109 HOH HOH . 
N 5 HOH A 146 546 110 HOH HOH . 
N 5 HOH A 147 547 112 HOH HOH . 
N 5 HOH A 148 548 113 HOH HOH . 
N 5 HOH A 149 549 116 HOH HOH . 
N 5 HOH A 150 550 118 HOH HOH . 
N 5 HOH A 151 551 119 HOH HOH . 
N 5 HOH A 152 552 120 HOH HOH . 
N 5 HOH A 153 553 121 HOH HOH . 
N 5 HOH A 154 554 123 HOH HOH . 
N 5 HOH A 155 555 124 HOH HOH . 
N 5 HOH A 156 556 126 HOH HOH . 
N 5 HOH A 157 557 127 HOH HOH . 
N 5 HOH A 158 558 129 HOH HOH . 
N 5 HOH A 159 559 130 HOH HOH . 
N 5 HOH A 160 560 135 HOH HOH . 
N 5 HOH A 161 561 136 HOH HOH . 
N 5 HOH A 162 562 137 HOH HOH . 
N 5 HOH A 163 563 138 HOH HOH . 
N 5 HOH A 164 564 141 HOH HOH . 
N 5 HOH A 165 565 142 HOH HOH . 
N 5 HOH A 166 566 145 HOH HOH . 
N 5 HOH A 167 567 148 HOH HOH . 
N 5 HOH A 168 568 150 HOH HOH . 
N 5 HOH A 169 569 152 HOH HOH . 
N 5 HOH A 170 570 153 HOH HOH . 
N 5 HOH A 171 571 154 HOH HOH . 
N 5 HOH A 172 572 156 HOH HOH . 
N 5 HOH A 173 573 157 HOH HOH . 
N 5 HOH A 174 574 160 HOH HOH . 
N 5 HOH A 175 575 162 HOH HOH . 
N 5 HOH A 176 576 163 HOH HOH . 
N 5 HOH A 177 577 164 HOH HOH . 
N 5 HOH A 178 578 166 HOH HOH . 
N 5 HOH A 179 579 168 HOH HOH . 
N 5 HOH A 180 580 169 HOH HOH . 
N 5 HOH A 181 581 171 HOH HOH . 
N 5 HOH A 182 582 172 HOH HOH . 
N 5 HOH A 183 583 173 HOH HOH . 
N 5 HOH A 184 584 175 HOH HOH . 
N 5 HOH A 185 585 178 HOH HOH . 
N 5 HOH A 186 586 179 HOH HOH . 
N 5 HOH A 187 587 180 HOH HOH . 
N 5 HOH A 188 588 182 HOH HOH . 
N 5 HOH A 189 589 183 HOH HOH . 
N 5 HOH A 190 590 184 HOH HOH . 
N 5 HOH A 191 591 185 HOH HOH . 
N 5 HOH A 192 592 186 HOH HOH . 
N 5 HOH A 193 593 187 HOH HOH . 
N 5 HOH A 194 594 189 HOH HOH . 
N 5 HOH A 195 595 190 HOH HOH . 
N 5 HOH A 196 596 192 HOH HOH . 
N 5 HOH A 197 597 193 HOH HOH . 
N 5 HOH A 198 598 194 HOH HOH . 
N 5 HOH A 199 599 195 HOH HOH . 
N 5 HOH A 200 600 196 HOH HOH . 
N 5 HOH A 201 601 197 HOH HOH . 
N 5 HOH A 202 602 198 HOH HOH . 
N 5 HOH A 203 603 200 HOH HOH . 
N 5 HOH A 204 604 201 HOH HOH . 
N 5 HOH A 205 605 203 HOH HOH . 
N 5 HOH A 206 606 204 HOH HOH . 
N 5 HOH A 207 607 205 HOH HOH . 
N 5 HOH A 208 608 206 HOH HOH . 
N 5 HOH A 209 609 207 HOH HOH . 
N 5 HOH A 210 610 208 HOH HOH . 
N 5 HOH A 211 611 209 HOH HOH . 
N 5 HOH A 212 612 211 HOH HOH . 
N 5 HOH A 213 613 212 HOH HOH . 
N 5 HOH A 214 614 214 HOH HOH . 
N 5 HOH A 215 615 215 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . L 4 27.801 -3.828 24.792 1 49.92 ? C1 EDO 311 A 1 
HETATM 2 O O1 EDO . . . L 4 27.424 -2.94 23.775 1 52.87 ? O1 EDO 311 A 1 
HETATM 3 C C2 EDO . . . L 4 29.263 -4.192 24.587 1 48.69 ? C2 EDO 311 A 1 
HETATM 4 O O2 EDO . . . L 4 29.702 -4.605 25.85 1 51.84 ? O2 EDO 311 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#