data_4Y99
#
_model_server_result.job_id            yjGpOCXfdNIE4fEbGBYjQg 
_model_server_result.datetime_utc      '2024-11-22 21:27:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4y99 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":501}' 
#
_entry.id    4Y99 
#
_exptl.entry_id    4Y99 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4Y99 
_cell.length_a            66.062 
_cell.length_b            80.368 
_cell.length_c            93.712 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4Y99 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 65 A ASP 65 1_555 D CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc2 A OD2 ASP 67 A ASP 67 1_555 D CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc3 A OG SER 69 A SER 69 1_555 D CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc4 A O THR 71 A THR 71 1_555 D CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc5 A OE1 GLU 76 A GLU 76 1_555 D CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc6 A OE2 GLU 76 A GLU 76 1_555 D CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc7 A OD1 ASP 105 A ASP 105 1_555 F CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc8 A OD1 ASN 107 A ASN 107 1_555 F CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc9 A OD2 ASP 109 A ASP 109 1_555 F CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc10 A O TYR 111 A TYR 111 1_555 F CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc11 A OE1 GLU 116 A GLU 116 1_555 F CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc12 A OE2 GLU 116 A GLU 116 1_555 F CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc13 A OD1 ASP 141 A ASP 141 1_555 E CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc14 A OD1 ASN 143 A ASN 143 1_555 E CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc15 A OD1 ASP 145 A ASP 145 1_555 E CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc16 A O ARG 147 A ARG 147 1_555 E CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc17 A OE1 GLU 152 A GLU 152 1_555 E CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc18 A OE2 GLU 152 A GLU 152 1_555 E CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc19 D CA CA . A CA 201 1_555 M O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc20 E CA CA . A CA 202 1_555 M O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc21 F CA CA . A CA 203 1_555 M O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     4Y99 
_atom_sites.fract_transf_matrix[1][1]    0.015137 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012443 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010671 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CA A 1 201 600 CA CA . 
E 4 CA A 1 202 601 CA CA . 
F 4 CA A 1 203 602 CA CA . 
G 5 DMS A 1 204 503 DMS DMS . 
H 5 DMS A 1 205 504 DMS DMS . 
I 5 DMS B 1 301 502 DMS DMS . 
J 5 DMS B 1 302 506 DMS DMS . 
K 5 DMS C 1 501 501 DMS DMS . 
L 5 DMS C 1 502 505 DMS DMS . 
M 6 HOH A 1 301 45 HOH HOH . 
M 6 HOH A 2 302 2 HOH HOH . 
M 6 HOH A 3 303 30 HOH HOH . 
M 6 HOH A 4 304 1 HOH HOH . 
M 6 HOH A 5 305 3 HOH HOH . 
M 6 HOH A 6 306 28 HOH HOH . 
M 6 HOH A 7 307 36 HOH HOH . 
M 6 HOH A 8 308 34 HOH HOH . 
M 6 HOH A 9 309 66 HOH HOH . 
M 6 HOH A 10 310 65 HOH HOH . 
M 6 HOH A 11 311 4 HOH HOH . 
M 6 HOH A 12 312 9 HOH HOH . 
M 6 HOH A 13 313 13 HOH HOH . 
M 6 HOH A 14 314 14 HOH HOH . 
M 6 HOH A 15 315 18 HOH HOH . 
M 6 HOH A 16 316 25 HOH HOH . 
M 6 HOH A 17 317 33 HOH HOH . 
M 6 HOH A 18 318 39 HOH HOH . 
M 6 HOH A 19 319 58 HOH HOH . 
M 6 HOH A 20 320 59 HOH HOH . 
M 6 HOH A 21 321 60 HOH HOH . 
M 6 HOH A 22 322 62 HOH HOH . 
M 6 HOH A 23 323 68 HOH HOH . 
M 6 HOH A 24 324 70 HOH HOH . 
M 6 HOH A 25 325 73 HOH HOH . 
M 6 HOH A 26 326 74 HOH HOH . 
M 6 HOH A 27 327 75 HOH HOH . 
M 6 HOH A 28 328 78 HOH HOH . 
M 6 HOH A 29 329 83 HOH HOH . 
M 6 HOH A 30 330 91 HOH HOH . 
M 6 HOH A 31 331 92 HOH HOH . 
M 6 HOH A 32 332 94 HOH HOH . 
M 6 HOH A 33 333 97 HOH HOH . 
M 6 HOH A 34 334 101 HOH HOH . 
N 6 HOH B 1 401 86 HOH HOH . 
N 6 HOH B 2 402 5 HOH HOH . 
N 6 HOH B 3 403 102 HOH HOH . 
N 6 HOH B 4 404 10 HOH HOH . 
N 6 HOH B 5 405 85 HOH HOH . 
N 6 HOH B 6 406 79 HOH HOH . 
N 6 HOH B 7 407 7 HOH HOH . 
N 6 HOH B 8 408 11 HOH HOH . 
N 6 HOH B 9 409 53 HOH HOH . 
N 6 HOH B 10 410 80 HOH HOH . 
N 6 HOH B 11 411 44 HOH HOH . 
N 6 HOH B 12 412 20 HOH HOH . 
N 6 HOH B 13 413 21 HOH HOH . 
N 6 HOH B 14 414 27 HOH HOH . 
N 6 HOH B 15 415 35 HOH HOH . 
N 6 HOH B 16 416 51 HOH HOH . 
N 6 HOH B 17 417 54 HOH HOH . 
N 6 HOH B 18 418 55 HOH HOH . 
N 6 HOH B 19 419 56 HOH HOH . 
N 6 HOH B 20 420 57 HOH HOH . 
N 6 HOH B 21 421 71 HOH HOH . 
N 6 HOH B 22 422 72 HOH HOH . 
N 6 HOH B 23 423 82 HOH HOH . 
N 6 HOH B 24 424 87 HOH HOH . 
N 6 HOH B 25 425 89 HOH HOH . 
O 6 HOH C 1 601 46 HOH HOH . 
O 6 HOH C 2 602 90 HOH HOH . 
O 6 HOH C 3 603 43 HOH HOH . 
O 6 HOH C 4 604 24 HOH HOH . 
O 6 HOH C 5 605 42 HOH HOH . 
O 6 HOH C 6 606 19 HOH HOH . 
O 6 HOH C 7 607 32 HOH HOH . 
O 6 HOH C 8 608 26 HOH HOH . 
O 6 HOH C 9 609 48 HOH HOH . 
O 6 HOH C 10 610 99 HOH HOH . 
O 6 HOH C 11 611 31 HOH HOH . 
O 6 HOH C 12 612 50 HOH HOH . 
O 6 HOH C 13 613 29 HOH HOH . 
O 6 HOH C 14 614 22 HOH HOH . 
O 6 HOH C 15 615 41 HOH HOH . 
O 6 HOH C 16 616 47 HOH HOH . 
O 6 HOH C 17 617 96 HOH HOH . 
O 6 HOH C 18 618 95 HOH HOH . 
O 6 HOH C 19 619 61 HOH HOH . 
O 6 HOH C 20 620 6 HOH HOH . 
O 6 HOH C 21 621 8 HOH HOH . 
O 6 HOH C 22 622 12 HOH HOH . 
O 6 HOH C 23 623 15 HOH HOH . 
O 6 HOH C 24 624 16 HOH HOH . 
O 6 HOH C 25 625 17 HOH HOH . 
O 6 HOH C 26 626 23 HOH HOH . 
O 6 HOH C 27 627 37 HOH HOH . 
O 6 HOH C 28 628 38 HOH HOH . 
O 6 HOH C 29 629 40 HOH HOH . 
O 6 HOH C 30 630 49 HOH HOH . 
O 6 HOH C 31 631 52 HOH HOH . 
O 6 HOH C 32 632 63 HOH HOH . 
O 6 HOH C 33 633 64 HOH HOH . 
O 6 HOH C 34 634 67 HOH HOH . 
O 6 HOH C 35 635 69 HOH HOH . 
O 6 HOH C 36 636 76 HOH HOH . 
O 6 HOH C 37 637 77 HOH HOH . 
O 6 HOH C 38 638 81 HOH HOH . 
O 6 HOH C 39 639 84 HOH HOH . 
O 6 HOH C 40 640 88 HOH HOH . 
O 6 HOH C 41 641 93 HOH HOH . 
O 6 HOH C 42 642 98 HOH HOH . 
O 6 HOH C 43 643 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . K 5 45.67 33.475 23.842 1 67.16 ? S DMS 501 C 1 
HETATM 2 O O DMS . . . K 5 44.416 33.759 22.584 1 67.09 ? O DMS 501 C 1 
HETATM 3 C C1 DMS . . . K 5 46.099 31.711 23.85 1 67.07 ? C1 DMS 501 C 1 
HETATM 4 C C2 DMS . . . K 5 47.234 34.2 23.262 1 67.68 ? C2 DMS 501 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#