data_4Y9E # _model_server_result.job_id QZC4j2WNZxcmmgD54LcbJw _model_server_result.datetime_utc '2024-11-14 17:13:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":200}' # _entry.id 4Y9E # _exptl.entry_id 4Y9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.433 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3,6,7-tetrahydroxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y9E _cell.length_a 43.415 _cell.length_b 85.806 _cell.length_c 64.073 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -43.415 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C23 H24 O6' _chem_comp.formula_weight 396.433 _chem_comp.id MKT _chem_comp.mon_nstd_flag . _chem_comp.name 1,3,6,7-tetrahydroxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Gamma-mangostin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CAR MKT sing 218 n n CAD CAR MKT sing 219 n n CAR CAK MKT doub 220 n n CAK CAO MKT sing 221 n n OAH CAU MKT sing 222 n n CAO CAX MKT sing 223 n n CAU CAX MKT sing 224 n y CAU CAS MKT doub 225 n y CAX CBC MKT doub 226 n y OAF CAS MKT sing 227 n n CAS CAL MKT sing 228 n y OAE CAY MKT doub 229 n n CBC CAY MKT sing 230 n n CBC CBA MKT sing 231 n y CAY CBB MKT sing 232 n n CAL CBA MKT doub 233 n y CBA OAP MKT sing 234 n n OAI CAV MKT sing 235 n n CBB CAV MKT sing 236 n y CBB CAZ MKT doub 237 n y CAV CAW MKT doub 238 n y OAP CAZ MKT sing 239 n n CAZ CAM MKT sing 240 n y CAW CAN MKT sing 241 n n CAW CAT MKT sing 242 n y CAN CAJ MKT sing 243 n n CAM CAT MKT doub 244 n y CAJ CAQ MKT doub 245 n n CAT OAG MKT sing 246 n n CAQ CAB MKT sing 247 n n CAQ CAA MKT sing 248 n n CAA H1 MKT sing 249 n n CAA H2 MKT sing 250 n n CAA H3 MKT sing 251 n n CAB H4 MKT sing 252 n n CAB H5 MKT sing 253 n n CAB H6 MKT sing 254 n n CAJ H7 MKT sing 255 n n CAN H8 MKT sing 256 n n CAN H9 MKT sing 257 n n OAI H10 MKT sing 258 n n OAG H11 MKT sing 259 n n CAM H12 MKT sing 260 n n CAL H13 MKT sing 261 n n OAF H14 MKT sing 262 n n OAH H15 MKT sing 263 n n CAO H16 MKT sing 264 n n CAO H17 MKT sing 265 n n CAK H18 MKT sing 266 n n CAD H21 MKT sing 267 n n CAD H22 MKT sing 268 n n CAD H23 MKT sing 269 n n CAC H24 MKT sing 270 n n CAC H25 MKT sing 271 n n CAC H26 MKT sing 272 n n # _atom_sites.entry_id 4Y9E _atom_sites.fract_transf_matrix[1][1] 0.023034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MKT A 1 200 200 MKT DRG . D 3 CL A 1 201 201 CL CL . E 3 CL A 1 202 202 CL CL . F 2 MKT B 1 200 200 MKT DRG . G 3 CL B 1 201 201 CL CL . H 3 CL B 1 202 202 CL CL . I 4 HOH A 1 301 181 HOH HOH . I 4 HOH A 2 302 72 HOH HOH . I 4 HOH A 3 303 54 HOH HOH . I 4 HOH A 4 304 130 HOH HOH . I 4 HOH A 5 305 175 HOH HOH . I 4 HOH A 6 306 25 HOH HOH . I 4 HOH A 7 307 44 HOH HOH . I 4 HOH A 8 308 117 HOH HOH . I 4 HOH A 9 309 83 HOH HOH . I 4 HOH A 10 310 19 HOH HOH . I 4 HOH A 11 311 61 HOH HOH . I 4 HOH A 12 312 167 HOH HOH . I 4 HOH A 13 313 74 HOH HOH . I 4 HOH A 14 314 52 HOH HOH . I 4 HOH A 15 315 27 HOH HOH . I 4 HOH A 16 316 37 HOH HOH . I 4 HOH A 17 317 179 HOH HOH . I 4 HOH A 18 318 75 HOH HOH . I 4 HOH A 19 319 13 HOH HOH . I 4 HOH A 20 320 65 HOH HOH . I 4 HOH A 21 321 118 HOH HOH . I 4 HOH A 22 322 30 HOH HOH . I 4 HOH A 23 323 151 HOH HOH . I 4 HOH A 24 324 66 HOH HOH . I 4 HOH A 25 325 101 HOH HOH . I 4 HOH A 26 326 46 HOH HOH . I 4 HOH A 27 327 56 HOH HOH . I 4 HOH A 28 328 178 HOH HOH . I 4 HOH A 29 329 161 HOH HOH . I 4 HOH A 30 330 34 HOH HOH . I 4 HOH A 31 331 164 HOH HOH . I 4 HOH A 32 332 60 HOH HOH . I 4 HOH A 33 333 165 HOH HOH . I 4 HOH A 34 334 163 HOH HOH . I 4 HOH A 35 335 78 HOH HOH . I 4 HOH A 36 336 105 HOH HOH . I 4 HOH A 37 337 67 HOH HOH . I 4 HOH A 38 338 132 HOH HOH . I 4 HOH A 39 339 91 HOH HOH . I 4 HOH A 40 340 50 HOH HOH . I 4 HOH A 41 341 58 HOH HOH . I 4 HOH A 42 342 62 HOH HOH . I 4 HOH A 43 343 71 HOH HOH . I 4 HOH A 44 344 129 HOH HOH . I 4 HOH A 45 345 104 HOH HOH . I 4 HOH A 46 346 85 HOH HOH . I 4 HOH A 47 347 41 HOH HOH . I 4 HOH A 48 348 170 HOH HOH . I 4 HOH A 49 349 3 HOH HOH . I 4 HOH A 50 350 4 HOH HOH . I 4 HOH A 51 351 5 HOH HOH . I 4 HOH A 52 352 8 HOH HOH . I 4 HOH A 53 353 11 HOH HOH . I 4 HOH A 54 354 14 HOH HOH . I 4 HOH A 55 355 15 HOH HOH . I 4 HOH A 56 356 17 HOH HOH . I 4 HOH A 57 357 20 HOH HOH . I 4 HOH A 58 358 22 HOH HOH . I 4 HOH A 59 359 23 HOH HOH . I 4 HOH A 60 360 24 HOH HOH . I 4 HOH A 61 361 28 HOH HOH . I 4 HOH A 62 362 29 HOH HOH . I 4 HOH A 63 363 35 HOH HOH . I 4 HOH A 64 364 38 HOH HOH . I 4 HOH A 65 365 39 HOH HOH . I 4 HOH A 66 366 42 HOH HOH . I 4 HOH A 67 367 45 HOH HOH . I 4 HOH A 68 368 48 HOH HOH . I 4 HOH A 69 369 49 HOH HOH . I 4 HOH A 70 370 55 HOH HOH . I 4 HOH A 71 371 57 HOH HOH . I 4 HOH A 72 372 59 HOH HOH . I 4 HOH A 73 373 64 HOH HOH . I 4 HOH A 74 374 69 HOH HOH . I 4 HOH A 75 375 70 HOH HOH . I 4 HOH A 76 376 87 HOH HOH . I 4 HOH A 77 377 89 HOH HOH . I 4 HOH A 78 378 93 HOH HOH . I 4 HOH A 79 379 94 HOH HOH . I 4 HOH A 80 380 95 HOH HOH . I 4 HOH A 81 381 96 HOH HOH . I 4 HOH A 82 382 97 HOH HOH . I 4 HOH A 83 383 102 HOH HOH . I 4 HOH A 84 384 108 HOH HOH . I 4 HOH A 85 385 109 HOH HOH . I 4 HOH A 86 386 112 HOH HOH . I 4 HOH A 87 387 115 HOH HOH . I 4 HOH A 88 388 116 HOH HOH . I 4 HOH A 89 389 121 HOH HOH . I 4 HOH A 90 390 122 HOH HOH . I 4 HOH A 91 391 124 HOH HOH . I 4 HOH A 92 392 125 HOH HOH . I 4 HOH A 93 393 126 HOH HOH . I 4 HOH A 94 394 127 HOH HOH . I 4 HOH A 95 395 135 HOH HOH . I 4 HOH A 96 396 138 HOH HOH . I 4 HOH A 97 397 139 HOH HOH . I 4 HOH A 98 398 141 HOH HOH . I 4 HOH A 99 399 147 HOH HOH . I 4 HOH A 100 400 153 HOH HOH . I 4 HOH A 101 401 155 HOH HOH . I 4 HOH A 102 402 162 HOH HOH . I 4 HOH A 103 403 174 HOH HOH . I 4 HOH A 104 404 180 HOH HOH . J 4 HOH B 1 301 133 HOH HOH . J 4 HOH B 2 302 33 HOH HOH . J 4 HOH B 3 303 40 HOH HOH . J 4 HOH B 4 304 111 HOH HOH . J 4 HOH B 5 305 32 HOH HOH . J 4 HOH B 6 306 114 HOH HOH . J 4 HOH B 7 307 77 HOH HOH . J 4 HOH B 8 308 53 HOH HOH . J 4 HOH B 9 309 63 HOH HOH . J 4 HOH B 10 310 86 HOH HOH . J 4 HOH B 11 311 136 HOH HOH . J 4 HOH B 12 312 150 HOH HOH . J 4 HOH B 13 313 158 HOH HOH . J 4 HOH B 14 314 99 HOH HOH . J 4 HOH B 15 315 143 HOH HOH . J 4 HOH B 16 316 184 HOH HOH . J 4 HOH B 17 317 144 HOH HOH . J 4 HOH B 18 318 159 HOH HOH . J 4 HOH B 19 319 182 HOH HOH . J 4 HOH B 20 320 81 HOH HOH . J 4 HOH B 21 321 183 HOH HOH . J 4 HOH B 22 322 84 HOH HOH . J 4 HOH B 23 323 36 HOH HOH . J 4 HOH B 24 324 149 HOH HOH . J 4 HOH B 25 325 100 HOH HOH . J 4 HOH B 26 326 68 HOH HOH . J 4 HOH B 27 327 134 HOH HOH . J 4 HOH B 28 328 120 HOH HOH . J 4 HOH B 29 329 73 HOH HOH . J 4 HOH B 30 330 107 HOH HOH . J 4 HOH B 31 331 92 HOH HOH . J 4 HOH B 32 332 140 HOH HOH . J 4 HOH B 33 333 80 HOH HOH . J 4 HOH B 34 334 146 HOH HOH . J 4 HOH B 35 335 123 HOH HOH . J 4 HOH B 36 336 154 HOH HOH . J 4 HOH B 37 337 1 HOH HOH . J 4 HOH B 38 338 2 HOH HOH . J 4 HOH B 39 339 6 HOH HOH . J 4 HOH B 40 340 7 HOH HOH . J 4 HOH B 41 341 9 HOH HOH . J 4 HOH B 42 342 10 HOH HOH . J 4 HOH B 43 343 12 HOH HOH . J 4 HOH B 44 344 16 HOH HOH . J 4 HOH B 45 345 18 HOH HOH . J 4 HOH B 46 346 21 HOH HOH . J 4 HOH B 47 347 26 HOH HOH . J 4 HOH B 48 348 31 HOH HOH . J 4 HOH B 49 349 43 HOH HOH . J 4 HOH B 50 350 47 HOH HOH . J 4 HOH B 51 351 51 HOH HOH . J 4 HOH B 52 352 76 HOH HOH . J 4 HOH B 53 353 79 HOH HOH . J 4 HOH B 54 354 82 HOH HOH . J 4 HOH B 55 355 88 HOH HOH . J 4 HOH B 56 356 90 HOH HOH . J 4 HOH B 57 357 98 HOH HOH . J 4 HOH B 58 358 103 HOH HOH . J 4 HOH B 59 359 106 HOH HOH . J 4 HOH B 60 360 110 HOH HOH . J 4 HOH B 61 361 113 HOH HOH . J 4 HOH B 62 362 119 HOH HOH . J 4 HOH B 63 363 128 HOH HOH . J 4 HOH B 64 364 131 HOH HOH . J 4 HOH B 65 365 137 HOH HOH . J 4 HOH B 66 366 142 HOH HOH . J 4 HOH B 67 367 145 HOH HOH . J 4 HOH B 68 368 148 HOH HOH . J 4 HOH B 69 369 152 HOH HOH . J 4 HOH B 70 370 157 HOH HOH . J 4 HOH B 71 371 160 HOH HOH . J 4 HOH B 72 372 166 HOH HOH . J 4 HOH B 73 373 168 HOH HOH . J 4 HOH B 74 374 169 HOH HOH . J 4 HOH B 75 375 171 HOH HOH . J 4 HOH B 76 376 172 HOH HOH . J 4 HOH B 77 377 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA MKT . . . F 2 -27.753 -3.505 -32.7 0.5 21.18 ? CAA MKT 200 B 1 HETATM 2 C CAQ MKT . . . F 2 -27.774 -2.076 -32.14 0.5 22.56 ? CAQ MKT 200 B 1 HETATM 3 C CAB MKT . . . F 2 -28.88 -1.12 -32.602 0.5 22.46 ? CAB MKT 200 B 1 HETATM 4 C CAJ MKT . . . F 2 -26.761 -1.661 -31.065 0.5 22.56 ? CAJ MKT 200 B 1 HETATM 5 C CAN MKT . . . F 2 -25.735 -2.725 -30.569 0.5 22.99 ? CAN MKT 200 B 1 HETATM 6 C CAW MKT . . . F 2 -24.596 -2.029 -30.131 0.5 22.95 ? CAW MKT 200 B 1 HETATM 7 C CAV MKT . . . F 2 -24.389 -1.717 -28.781 0.5 22.27 ? CAV MKT 200 B 1 HETATM 8 O OAI MKT . . . F 2 -25.291 -2.169 -27.872 0.5 23.07 ? OAI MKT 200 B 1 HETATM 9 C CAT MKT . . . F 2 -23.669 -1.565 -31.052 0.5 23.78 ? CAT MKT 200 B 1 HETATM 10 O OAG MKT . . . F 2 -23.874 -1.872 -32.375 0.5 25.32 ? OAG MKT 200 B 1 HETATM 11 C CAM MKT . . . F 2 -22.567 -0.835 -30.631 0.5 23.9 ? CAM MKT 200 B 1 HETATM 12 C CAZ MKT . . . F 2 -22.382 -0.557 -29.274 0.5 23.03 ? CAZ MKT 200 B 1 HETATM 13 O OAP MKT . . . F 2 -21.293 0.162 -28.869 0.5 23.11 ? OAP MKT 200 B 1 HETATM 14 C CBB MKT . . . F 2 -23.292 -0.984 -28.321 0.5 22.25 ? CBB MKT 200 B 1 HETATM 15 C CAY MKT . . . F 2 -23.092 -0.679 -26.958 0.5 21.81 ? CAY MKT 200 B 1 HETATM 16 O OAE MKT . . . F 2 -23.85 -1.174 -26.115 0.5 19.71 ? OAE MKT 200 B 1 HETATM 17 C CBC MKT . . . F 2 -21.956 0.066 -26.568 0.5 22.24 ? CBC MKT 200 B 1 HETATM 18 C CBA MKT . . . F 2 -21.056 0.486 -27.56 0.5 22.39 ? CBA MKT 200 B 1 HETATM 19 C CAL MKT . . . F 2 -19.897 1.212 -27.283 0.5 23.3 ? CAL MKT 200 B 1 HETATM 20 C CAS MKT . . . F 2 -19.599 1.55 -25.975 0.5 22.79 ? CAS MKT 200 B 1 HETATM 21 O OAF MKT . . . F 2 -18.488 2.276 -25.635 0.5 23.77 ? OAF MKT 200 B 1 HETATM 22 C CAU MKT . . . F 2 -20.483 1.159 -24.971 0.5 22.75 ? CAU MKT 200 B 1 HETATM 23 O OAH MKT . . . F 2 -20.187 1.508 -23.69 0.5 23.62 ? OAH MKT 200 B 1 HETATM 24 C CAX MKT . . . F 2 -21.655 0.429 -25.232 0.5 22.15 ? CAX MKT 200 B 1 HETATM 25 C CAO MKT . . . F 2 -22.484 0.087 -24.14 0.5 21.1 ? CAO MKT 200 B 1 HETATM 26 C CAK MKT . . . F 2 -21.946 -1.194 -23.486 0.5 22.4 ? CAK MKT 200 B 1 HETATM 27 C CAR MKT . . . F 2 -22.124 -1.353 -21.979 0.5 20.27 ? CAR MKT 200 B 1 HETATM 28 C CAD MKT . . . F 2 -22.525 -2.702 -21.38 0.5 20.31 ? CAD MKT 200 B 1 HETATM 29 C CAC MKT . . . F 2 -21.862 -0.173 -21.043 0.5 19.46 ? CAC MKT 200 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #