data_4Y9H # _model_server_result.job_id 3YRnhVlRZ7QqwMN4P4WJ7A _model_server_result.datetime_utc '2024-11-26 20:57:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4y9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 4Y9H # _exptl.entry_id 4Y9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.282 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4Y9H _cell.length_a 45.215 _cell.length_b 102.794 _cell.length_c 128.337 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 K N N ? 6 R N N # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 70 n n C1 H11 D10 sing 71 n n C1 H12 D10 sing 72 n n C1 H13 D10 sing 73 n n C2 C3 D10 sing 74 n n C2 H21 D10 sing 75 n n C2 H22 D10 sing 76 n n C3 C4 D10 sing 77 n n C3 H31 D10 sing 78 n n C3 H32 D10 sing 79 n n C4 C5 D10 sing 80 n n C4 H41 D10 sing 81 n n C4 H42 D10 sing 82 n n C5 C6 D10 sing 83 n n C5 H51 D10 sing 84 n n C5 H52 D10 sing 85 n n C6 C7 D10 sing 86 n n C6 H61 D10 sing 87 n n C6 H62 D10 sing 88 n n C7 C8 D10 sing 89 n n C7 H71 D10 sing 90 n n C7 H72 D10 sing 91 n n C8 C9 D10 sing 92 n n C8 H81 D10 sing 93 n n C8 H82 D10 sing 94 n n C9 C10 D10 sing 95 n n C9 H91 D10 sing 96 n n C9 H92 D10 sing 97 n n C10 H101 D10 sing 98 n n C10 H102 D10 sing 99 n n C10 H103 D10 sing 100 n n # _atom_sites.entry_id 4Y9H _atom_sites.fract_transf_matrix[1][1] 0.022117 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 PO4 A 1 302 310 PO4 PO4 . D 4 HP6 A 1 303 401 HP6 HP6 . E 5 D12 A 1 304 402 D12 D12 . F 5 D12 A 1 305 403 D12 D12 . G 5 D12 A 1 306 405 D12 D12 . H 6 D10 A 1 307 406 D10 D10 . I 6 D10 A 1 308 409 D10 D10 . J 7 R16 A 1 309 411 R16 R16 . K 6 D10 A 1 310 450 D10 D10 . L 5 D12 A 1 311 451 D12 D12 . M 5 D12 A 1 312 452 D12 D12 . N 8 DD9 A 1 313 453 DD9 DD9 . O 5 D12 A 1 314 454 D12 D12 . P 5 D12 A 1 315 455 D12 D12 . Q 5 D12 A 1 316 456 D12 D12 . R 6 D10 A 1 317 457 D10 D10 . S 9 HOH A 1 401 1425 HOH HOH . S 9 HOH A 2 402 1394 HOH HOH . S 9 HOH A 3 403 1280 HOH HOH . S 9 HOH A 4 404 1260 HOH HOH . S 9 HOH A 5 405 1323 HOH HOH . S 9 HOH A 6 406 1435 HOH HOH . S 9 HOH A 7 407 1286 HOH HOH . S 9 HOH A 8 408 1265 HOH HOH . S 9 HOH A 9 409 1263 HOH HOH . S 9 HOH A 10 410 1266 HOH HOH . S 9 HOH A 11 411 1292 HOH HOH . S 9 HOH A 12 412 1287 HOH HOH . S 9 HOH A 13 413 1262 HOH HOH . S 9 HOH A 14 414 1264 HOH HOH . S 9 HOH A 15 415 1309 HOH HOH . S 9 HOH A 16 416 1270 HOH HOH . S 9 HOH A 17 417 1290 HOH HOH . S 9 HOH A 18 418 1293 HOH HOH . S 9 HOH A 19 419 1299 HOH HOH . S 9 HOH A 20 420 1258 HOH HOH . S 9 HOH A 21 421 1272 HOH HOH . S 9 HOH A 22 422 1307 HOH HOH . S 9 HOH A 23 423 1414 HOH HOH . S 9 HOH A 24 424 1304 HOH HOH . S 9 HOH A 25 425 1418 HOH HOH . S 9 HOH A 26 426 1333 HOH HOH . S 9 HOH A 27 427 1289 HOH HOH . S 9 HOH A 28 428 1303 HOH HOH . S 9 HOH A 29 429 1273 HOH HOH . S 9 HOH A 30 430 1276 HOH HOH . S 9 HOH A 31 431 1321 HOH HOH . S 9 HOH A 32 432 1361 HOH HOH . S 9 HOH A 33 433 1440 HOH HOH . S 9 HOH A 34 434 1296 HOH HOH . S 9 HOH A 35 435 1277 HOH HOH . S 9 HOH A 36 436 1261 HOH HOH . S 9 HOH A 37 437 1426 HOH HOH . S 9 HOH A 38 438 1297 HOH HOH . S 9 HOH A 39 439 1338 HOH HOH . S 9 HOH A 40 440 1268 HOH HOH . S 9 HOH A 41 441 1283 HOH HOH . S 9 HOH A 42 442 1291 HOH HOH . S 9 HOH A 43 443 1349 HOH HOH . S 9 HOH A 44 444 1271 HOH HOH . S 9 HOH A 45 445 1430 HOH HOH . S 9 HOH A 46 446 1324 HOH HOH . S 9 HOH A 47 447 1441 HOH HOH . S 9 HOH A 48 448 1314 HOH HOH . S 9 HOH A 49 449 1381 HOH HOH . S 9 HOH A 50 450 1279 HOH HOH . S 9 HOH A 51 451 1285 HOH HOH . S 9 HOH A 52 452 1306 HOH HOH . S 9 HOH A 53 453 1313 HOH HOH . S 9 HOH A 54 454 1288 HOH HOH . S 9 HOH A 55 455 1259 HOH HOH . S 9 HOH A 56 456 1416 HOH HOH . S 9 HOH A 57 457 1346 HOH HOH . S 9 HOH A 58 458 1284 HOH HOH . S 9 HOH A 59 459 1274 HOH HOH . S 9 HOH A 60 460 1424 HOH HOH . S 9 HOH A 61 461 1344 HOH HOH . S 9 HOH A 62 462 1275 HOH HOH . S 9 HOH A 63 463 1325 HOH HOH . S 9 HOH A 64 464 1320 HOH HOH . S 9 HOH A 65 465 1331 HOH HOH . S 9 HOH A 66 466 1362 HOH HOH . S 9 HOH A 67 467 1308 HOH HOH . S 9 HOH A 68 468 1352 HOH HOH . S 9 HOH A 69 469 1300 HOH HOH . S 9 HOH A 70 470 1322 HOH HOH . S 9 HOH A 71 471 1373 HOH HOH . S 9 HOH A 72 472 1334 HOH HOH . S 9 HOH A 73 473 1433 HOH HOH . S 9 HOH A 74 474 1421 HOH HOH . S 9 HOH A 75 475 1438 HOH HOH . S 9 HOH A 76 476 1360 HOH HOH . S 9 HOH A 77 477 1311 HOH HOH . S 9 HOH A 78 478 1342 HOH HOH . S 9 HOH A 79 479 1327 HOH HOH . S 9 HOH A 80 480 1332 HOH HOH . S 9 HOH A 81 481 1413 HOH HOH . S 9 HOH A 82 482 1431 HOH HOH . S 9 HOH A 83 483 1427 HOH HOH . S 9 HOH A 84 484 1336 HOH HOH . S 9 HOH A 85 485 1407 HOH HOH . S 9 HOH A 86 486 1429 HOH HOH . S 9 HOH A 87 487 1422 HOH HOH . S 9 HOH A 88 488 1335 HOH HOH . S 9 HOH A 89 489 1388 HOH HOH . S 9 HOH A 90 490 1432 HOH HOH . S 9 HOH A 91 491 1423 HOH HOH . S 9 HOH A 92 492 1404 HOH HOH . S 9 HOH A 93 493 1439 HOH HOH . S 9 HOH A 94 494 1399 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . I 6 41.485 6.591 -2.505 1 54.05 ? C1 D10 308 A 1 HETATM 2 C C2 D10 . . . I 6 42.028 6.613 -3.918 1 53.68 ? C2 D10 308 A 1 HETATM 3 C C3 D10 . . . I 6 42.075 5.222 -4.559 1 56.33 ? C3 D10 308 A 1 HETATM 4 C C4 D10 . . . I 6 41.606 5.273 -6.023 1 54.01 ? C4 D10 308 A 1 HETATM 5 C C5 D10 . . . I 6 42.364 4.351 -6.974 1 55.12 ? C5 D10 308 A 1 HETATM 6 C C6 D10 . . . I 6 41.553 4.067 -8.246 1 62.93 ? C6 D10 308 A 1 HETATM 7 C C7 D10 . . . I 6 42.404 3.67 -9.453 1 61.63 ? C7 D10 308 A 1 HETATM 8 C C8 D10 . . . I 6 41.729 2.653 -10.38 1 61.91 ? C8 D10 308 A 1 HETATM 9 C C9 D10 . . . I 6 41.782 3.122 -11.834 1 64.56 ? C9 D10 308 A 1 HETATM 10 C C10 D10 . . . I 6 41.701 2.01 -12.843 1 63.46 ? C10 D10 308 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #