data_4YA8 # _model_server_result.job_id uM-LeINbzwiz6Vl72MKzcQ _model_server_result.datetime_utc '2024-11-17 00:36:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ya8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":400}' # _entry.id 4YA8 # _exptl.entry_id 4YA8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 609.801 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N'-[(2S,3S)-3-hydroxy-1-phenyl-4-{[2-(pyridin-2-yl)propan-2-yl]amino}butan-2-yl]-N,N-dipropyl-5-(pyridin-1(2H)-yl)benzene-1,3-dicarboxamide" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YA8 _cell.length_a 177.77 _cell.length_b 177.77 _cell.length_c 177.77 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YA8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,L 1 1 B,F,G,M 2 1 C,H,I,J 3 1 D,K 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 47 1_555 A SG CYS 52 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 249 A CYS 249 1_555 A SG CYS 285 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 47 B CYS 47 1_555 B SG CYS 52 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 249 B CYS 249 1_555 B SG CYS 285 B CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 47 C CYS 47 1_555 C SG CYS 52 C CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 249 C CYS 249 1_555 C SG CYS 285 C CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 D SG CYS 47 D CYS 47 1_555 D SG CYS 52 D CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf8 D SG CYS 249 D CYS 249 1_555 D SG CYS 285 D CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C37 H47 N5 O3' _chem_comp.formula_weight 609.801 _chem_comp.id 49W _chem_comp.mon_nstd_flag . _chem_comp.name "N'-[(2S,3S)-3-hydroxy-1-phenyl-4-{[2-(pyridin-2-yl)propan-2-yl]amino}butan-2-yl]-N,N-dipropyl-5-(pyridin-1(2H)-yl)benzene-1,3-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C7 49W sing 1 n n C12 C7 49W sing 2 n n C7 N4 49W sing 3 n n C7 C3 49W sing 4 n n N4 C9 49W sing 5 n n C3 C4 49W doub 6 n y C3 N5 49W sing 7 n y C4 C5 49W sing 8 n y O2 C10 49W sing 9 n n N5 C1 49W doub 10 n y C9 C10 49W sing 11 n n C5 C6 49W doub 12 n y C10 C11 49W sing 13 n n C1 C6 49W sing 14 n y C11 C14 49W sing 15 n n C11 N1 49W sing 16 n n C14 C19 49W sing 17 n n N1 C15 49W sing 18 n n C19 C20 49W doub 19 n y C19 C18 49W sing 20 n y C15 O3 49W doub 21 n n C15 C25 49W sing 22 n n C20 C21 49W sing 23 n y C18 C17 49W doub 24 n y C25 C26 49W doub 25 n y C25 C24 49W sing 26 n y C26 C27 49W sing 27 n y C31 C30 49W doub 28 n n C31 C32 49W sing 29 n n C30 N2 49W sing 30 n n C32 C29 49W doub 31 n n C24 C23 49W doub 32 n y N2 C27 49W sing 33 n n N2 C47 49W sing 34 n n C27 C22 49W doub 35 n y C21 C16 49W doub 36 n y C29 C47 49W sing 37 n n C17 C16 49W sing 38 n y C23 C22 49W sing 39 n y C23 C28 49W sing 40 n n O6 C28 49W doub 41 n n C28 N3 49W sing 42 n n N3 C36 49W sing 43 n n N3 C33 49W sing 44 n n C37 C36 49W sing 45 n n C37 C38 49W sing 46 n n C33 C34 49W sing 47 n n C34 C35 49W sing 48 n n C24 H1 49W sing 49 n n C26 H2 49W sing 50 n n C30 H3 49W sing 51 n n C31 H4 49W sing 52 n n C32 H5 49W sing 53 n n C29 H6 49W sing 54 n n C47 H7 49W sing 55 n n C47 H8 49W sing 56 n n C22 H9 49W sing 57 n n C33 H10 49W sing 58 n n C33 H11 49W sing 59 n n C34 H12 49W sing 60 n n C34 H13 49W sing 61 n n C35 H14 49W sing 62 n n C35 H15 49W sing 63 n n C35 H16 49W sing 64 n n C36 H17 49W sing 65 n n C36 H18 49W sing 66 n n C37 H19 49W sing 67 n n C37 H20 49W sing 68 n n C38 H21 49W sing 69 n n C38 H22 49W sing 70 n n C38 H23 49W sing 71 n n N1 H24 49W sing 72 n n C11 H25 49W sing 73 n n C14 H26 49W sing 74 n n C14 H27 49W sing 75 n n C20 H28 49W sing 76 n n C21 H29 49W sing 77 n n C16 H30 49W sing 78 n n C17 H31 49W sing 79 n n C18 H32 49W sing 80 n n C10 H33 49W sing 81 n n O2 H34 49W sing 82 n n C9 H35 49W sing 83 n n C9 H36 49W sing 84 n n N4 H37 49W sing 85 n n C12 H39 49W sing 86 n n C12 H40 49W sing 87 n n C12 H41 49W sing 88 n n C13 H42 49W sing 89 n n C13 H43 49W sing 90 n n C13 H44 49W sing 91 n n C1 H45 49W sing 92 n n C6 H46 49W sing 93 n n C5 H47 49W sing 94 n n C4 H48 49W sing 95 n n # _atom_sites.entry_id 4YA8 _atom_sites.fract_transf_matrix[1][1] 0.005625 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 49W A 1 400 400 49W p39 . F 2 49W B 1 401 400 49W p39 . G 3 GOL B 1 402 1 GOL GOL . H 2 49W C 1 401 400 49W p39 . I 3 GOL C 1 402 2 GOL GOL . J 3 GOL C 1 403 3 GOL GOL . K 2 49W D 1 400 400 49W p39 . L 4 HOH A 1 501 1 HOH HOH . L 4 HOH A 2 502 3 HOH HOH . M 4 HOH B 1 501 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 49W . . . E 2 -65.77 -21.595 -16.799 1 85.64 ? O3 49W 400 A 1 HETATM 2 C C15 49W . . . E 2 -64.816 -22.244 -17.246 1 77.74 ? C15 49W 400 A 1 HETATM 3 C C25 49W . . . E 2 -64.317 -23.5 -16.444 1 70.77 ? C25 49W 400 A 1 HETATM 4 C C24 49W . . . E 2 -63.114 -23.464 -15.743 1 71.2 ? C24 49W 400 A 1 HETATM 5 C C26 49W . . . E 2 -65.109 -24.669 -16.427 1 77.37 ? C26 49W 400 A 1 HETATM 6 C C27 49W . . . E 2 -64.689 -25.795 -15.71 1 81.99 ? C27 49W 400 A 1 HETATM 7 N N2 49W . . . E 2 -65.514 -26.955 -15.725 1 87.77 ? N2 49W 400 A 1 HETATM 8 C C30 49W . . . E 2 -64.961 -28.195 -15.883 1 98.36 ? C30 49W 400 A 1 HETATM 9 C C31 49W . . . E 2 -65.796 -29.336 -15.905 1 104.62 ? C31 49W 400 A 1 HETATM 10 C C32 49W . . . E 2 -67.158 -29.194 -15.772 1 99 ? C32 49W 400 A 1 HETATM 11 C C29 49W . . . E 2 -67.708 -27.948 -15.62 1 85.13 ? C29 49W 400 A 1 HETATM 12 C C47 49W . . . E 2 -66.874 -26.813 -15.599 1 78.89 ? C47 49W 400 A 1 HETATM 13 C C22 49W . . . E 2 -63.477 -25.772 -15.007 1 74.43 ? C22 49W 400 A 1 HETATM 14 C C23 49W . . . E 2 -62.687 -24.598 -15.021 1 71.94 ? C23 49W 400 A 1 HETATM 15 C C28 49W . . . E 2 -61.335 -24.552 -14.238 1 92.46 ? C28 49W 400 A 1 HETATM 16 N N3 49W . . . E 2 -61.279 -23.941 -12.904 1 92.31 ? N3 49W 400 A 1 HETATM 17 C C33 49W . . . E 2 -60.017 -23.885 -12.15 1 109.21 ? C33 49W 400 A 1 HETATM 18 C C34 49W . . . E 2 -60.238 -24.457 -10.739 1 122.57 ? C34 49W 400 A 1 HETATM 19 C C35 49W . . . E 2 -59.324 -23.736 -9.727 1 125.18 ? C35 49W 400 A 1 HETATM 20 C C36 49W . . . E 2 -62.505 -23.382 -12.312 1 77.17 ? C36 49W 400 A 1 HETATM 21 C C37 49W . . . E 2 -62.532 -21.866 -12.548 1 77.47 ? C37 49W 400 A 1 HETATM 22 C C38 49W . . . E 2 -63.267 -21.217 -11.388 1 83.91 ? C38 49W 400 A 1 HETATM 23 O O6 49W . . . E 2 -60.323 -25.023 -14.742 1 87.91 ? O6 49W 400 A 1 HETATM 24 N N1 49W . . . E 2 -64.18 -21.847 -18.494 1 61.88 ? N1 49W 400 A 1 HETATM 25 C C11 49W . . . E 2 -64.678 -20.676 -19.184 1 69.22 ? C11 49W 400 A 1 HETATM 26 C C14 49W . . . E 2 -63.653 -19.579 -19.098 1 57.85 ? C14 49W 400 A 1 HETATM 27 C C19 49W . . . E 2 -63.392 -19.354 -17.589 1 60.34 ? C19 49W 400 A 1 HETATM 28 C C20 49W . . . E 2 -62.235 -19.847 -16.991 1 71.25 ? C20 49W 400 A 1 HETATM 29 C C21 49W . . . E 2 -62.012 -19.651 -15.623 1 64.05 ? C21 49W 400 A 1 HETATM 30 C C16 49W . . . E 2 -62.951 -18.966 -14.866 1 55.24 ? C16 49W 400 A 1 HETATM 31 C C17 49W . . . E 2 -64.109 -18.485 -15.466 1 51.85 ? C17 49W 400 A 1 HETATM 32 C C18 49W . . . E 2 -64.336 -18.674 -16.821 1 54.83 ? C18 49W 400 A 1 HETATM 33 C C10 49W . . . E 2 -65.031 -20.986 -20.646 1 78.93 ? C10 49W 400 A 1 HETATM 34 O O2 49W . . . E 2 -63.948 -20.697 -21.474 1 84.27 ? O2 49W 400 A 1 HETATM 35 C C9 49W . . . E 2 -65.397 -22.438 -20.773 1 79.13 ? C9 49W 400 A 1 HETATM 36 N N4 49W . . . E 2 -64.982 -22.932 -22.071 1 78.21 ? N4 49W 400 A 1 HETATM 37 C C7 49W . . . E 2 -66.065 -23.718 -22.68 1 63.04 ? C7 49W 400 A 1 HETATM 38 C C12 49W . . . E 2 -67.249 -22.799 -22.97 1 53.22 ? C12 49W 400 A 1 HETATM 39 C C13 49W . . . E 2 -65.579 -24.33 -23.974 1 51.64 ? C13 49W 400 A 1 HETATM 40 C C3 49W . . . E 2 -66.535 -24.873 -21.706 1 87.25 ? C3 49W 400 A 1 HETATM 41 N N5 49W . . . E 2 -65.597 -25.613 -20.976 1 93.08 ? N5 49W 400 A 1 HETATM 42 C C1 49W . . . E 2 -66.022 -26.62 -20.126 1 90.82 ? C1 49W 400 A 1 HETATM 43 C C6 49W . . . E 2 -67.379 -26.9 -20.008 1 87.11 ? C6 49W 400 A 1 HETATM 44 C C5 49W . . . E 2 -68.307 -26.17 -20.734 1 80.21 ? C5 49W 400 A 1 HETATM 45 C C4 49W . . . E 2 -67.887 -25.155 -21.584 1 78.28 ? C4 49W 400 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 45 #