data_4YA8
#
_model_server_result.job_id            DBcpPLhD-OlgkGbSNUbprQ 
_model_server_result.datetime_utc      '2024-11-17 00:28:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ya8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    4YA8 
#
_exptl.entry_id    4YA8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              609.801 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N'-[(2S,3S)-3-hydroxy-1-phenyl-4-{[2-(pyridin-2-yl)propan-2-yl]amino}butan-2-yl]-N,N-dipropyl-5-(pyridin-1(2H)-yl)benzene-1,3-dicarboxamide" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YA8 
_cell.length_a            177.77 
_cell.length_b            177.77 
_cell.length_c            177.77 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YA8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,L 1 1 
B,F,G,M 2 1 
C,H,I,J 3 1 
D,K 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 47 A CYS 47 1_555 A SG CYS 52 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 249 A CYS 249 1_555 A SG CYS 285 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 47 B CYS 47 1_555 B SG CYS 52 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 B SG CYS 249 B CYS 249 1_555 B SG CYS 285 B CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 C SG CYS 47 C CYS 47 1_555 C SG CYS 52 C CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 C SG CYS 249 C CYS 249 1_555 C SG CYS 285 C CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 D SG CYS 47 D CYS 47 1_555 D SG CYS 52 D CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf8 D SG CYS 249 D CYS 249 1_555 D SG CYS 285 D CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C37 H47 N5 O3' 
_chem_comp.formula_weight    609.801 
_chem_comp.id                49W 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N'-[(2S,3S)-3-hydroxy-1-phenyl-4-{[2-(pyridin-2-yl)propan-2-yl]amino}butan-2-yl]-N,N-dipropyl-5-(pyridin-1(2H)-yl)benzene-1,3-dicarboxamide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 C7 49W sing 1 n n 
C12 C7 49W sing 2 n n 
C7 N4 49W sing 3 n n 
C7 C3 49W sing 4 n n 
N4 C9 49W sing 5 n n 
C3 C4 49W doub 6 n y 
C3 N5 49W sing 7 n y 
C4 C5 49W sing 8 n y 
O2 C10 49W sing 9 n n 
N5 C1 49W doub 10 n y 
C9 C10 49W sing 11 n n 
C5 C6 49W doub 12 n y 
C10 C11 49W sing 13 n n 
C1 C6 49W sing 14 n y 
C11 C14 49W sing 15 n n 
C11 N1 49W sing 16 n n 
C14 C19 49W sing 17 n n 
N1 C15 49W sing 18 n n 
C19 C20 49W doub 19 n y 
C19 C18 49W sing 20 n y 
C15 O3 49W doub 21 n n 
C15 C25 49W sing 22 n n 
C20 C21 49W sing 23 n y 
C18 C17 49W doub 24 n y 
C25 C26 49W doub 25 n y 
C25 C24 49W sing 26 n y 
C26 C27 49W sing 27 n y 
C31 C30 49W doub 28 n n 
C31 C32 49W sing 29 n n 
C30 N2 49W sing 30 n n 
C32 C29 49W doub 31 n n 
C24 C23 49W doub 32 n y 
N2 C27 49W sing 33 n n 
N2 C47 49W sing 34 n n 
C27 C22 49W doub 35 n y 
C21 C16 49W doub 36 n y 
C29 C47 49W sing 37 n n 
C17 C16 49W sing 38 n y 
C23 C22 49W sing 39 n y 
C23 C28 49W sing 40 n n 
O6 C28 49W doub 41 n n 
C28 N3 49W sing 42 n n 
N3 C36 49W sing 43 n n 
N3 C33 49W sing 44 n n 
C37 C36 49W sing 45 n n 
C37 C38 49W sing 46 n n 
C33 C34 49W sing 47 n n 
C34 C35 49W sing 48 n n 
C24 H1 49W sing 49 n n 
C26 H2 49W sing 50 n n 
C30 H3 49W sing 51 n n 
C31 H4 49W sing 52 n n 
C32 H5 49W sing 53 n n 
C29 H6 49W sing 54 n n 
C47 H7 49W sing 55 n n 
C47 H8 49W sing 56 n n 
C22 H9 49W sing 57 n n 
C33 H10 49W sing 58 n n 
C33 H11 49W sing 59 n n 
C34 H12 49W sing 60 n n 
C34 H13 49W sing 61 n n 
C35 H14 49W sing 62 n n 
C35 H15 49W sing 63 n n 
C35 H16 49W sing 64 n n 
C36 H17 49W sing 65 n n 
C36 H18 49W sing 66 n n 
C37 H19 49W sing 67 n n 
C37 H20 49W sing 68 n n 
C38 H21 49W sing 69 n n 
C38 H22 49W sing 70 n n 
C38 H23 49W sing 71 n n 
N1 H24 49W sing 72 n n 
C11 H25 49W sing 73 n n 
C14 H26 49W sing 74 n n 
C14 H27 49W sing 75 n n 
C20 H28 49W sing 76 n n 
C21 H29 49W sing 77 n n 
C16 H30 49W sing 78 n n 
C17 H31 49W sing 79 n n 
C18 H32 49W sing 80 n n 
C10 H33 49W sing 81 n n 
O2 H34 49W sing 82 n n 
C9 H35 49W sing 83 n n 
C9 H36 49W sing 84 n n 
N4 H37 49W sing 85 n n 
C12 H39 49W sing 86 n n 
C12 H40 49W sing 87 n n 
C12 H41 49W sing 88 n n 
C13 H42 49W sing 89 n n 
C13 H43 49W sing 90 n n 
C13 H44 49W sing 91 n n 
C1 H45 49W sing 92 n n 
C6 H46 49W sing 93 n n 
C5 H47 49W sing 94 n n 
C4 H48 49W sing 95 n n 
#
_atom_sites.entry_id                     4YA8 
_atom_sites.fract_transf_matrix[1][1]    0.005625 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005625 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005625 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 49W A 1 400 400 49W p39 . 
F 2 49W B 1 401 400 49W p39 . 
G 3 GOL B 1 402 1 GOL GOL . 
H 2 49W C 1 401 400 49W p39 . 
I 3 GOL C 1 402 2 GOL GOL . 
J 3 GOL C 1 403 3 GOL GOL . 
K 2 49W D 1 400 400 49W p39 . 
L 4 HOH A 1 501 1 HOH HOH . 
L 4 HOH A 2 502 3 HOH HOH . 
M 4 HOH B 1 501 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 49W . . . F 2 -84.083 -24.53 -17.657 1 83.53 ? O3 49W 401 B 1 
HETATM 2 C C15 49W . . . F 2 -85.153 -23.994 -17.955 1 74.51 ? C15 49W 401 B 1 
HETATM 3 C C25 49W . . . F 2 -85.619 -22.72 -17.158 1 75.59 ? C25 49W 401 B 1 
HETATM 4 C C24 49W . . . F 2 -86.832 -22.735 -16.479 1 78.68 ? C24 49W 401 B 1 
HETATM 5 C C26 49W . . . F 2 -84.811 -21.556 -17.12 1 88.13 ? C26 49W 401 B 1 
HETATM 6 C C27 49W . . . F 2 -85.232 -20.422 -16.407 1 92.08 ? C27 49W 401 B 1 
HETATM 7 N N2 49W . . . F 2 -84.419 -19.252 -16.373 1 104.84 ? N2 49W 401 B 1 
HETATM 8 C C30 49W . . . F 2 -83.658 -18.985 -15.271 1 107.82 ? C30 49W 401 B 1 
HETATM 9 C C31 49W . . . F 2 -82.852 -17.826 -15.238 1 112.27 ? C31 49W 401 B 1 
HETATM 10 C C32 49W . . . F 2 -82.834 -16.97 -16.312 1 117.22 ? C32 49W 401 B 1 
HETATM 11 C C29 49W . . . F 2 -83.598 -17.241 -17.416 1 119.18 ? C29 49W 401 B 1 
HETATM 12 C C47 49W . . . F 2 -84.401 -18.398 -17.447 1 115.81 ? C47 49W 401 B 1 
HETATM 13 C C22 49W . . . F 2 -86.453 -20.435 -15.723 1 76.87 ? C22 49W 401 B 1 
HETATM 14 C C23 49W . . . F 2 -87.258 -21.597 -15.76 1 74.83 ? C23 49W 401 B 1 
HETATM 15 C C28 49W . . . F 2 -88.622 -21.636 -14.997 1 101.77 ? C28 49W 401 B 1 
HETATM 16 N N3 49W . . . F 2 -88.696 -22.26 -13.666 1 103.11 ? N3 49W 401 B 1 
HETATM 17 C C33 49W . . . F 2 -89.984 -22.303 -12.96 1 99.43 ? C33 49W 401 B 1 
HETATM 18 C C34 49W . . . F 2 -90.512 -23.744 -12.994 1 109.14 ? C34 49W 401 B 1 
HETATM 19 C C35 49W . . . F 2 -90.38 -24.303 -14.426 1 111.62 ? C35 49W 401 B 1 
HETATM 20 C C36 49W . . . F 2 -87.488 -22.835 -13.035 1 107.88 ? C36 49W 401 B 1 
HETATM 21 C C37 49W . . . F 2 -86.762 -21.765 -12.201 1 113.59 ? C37 49W 401 B 1 
HETATM 22 C C38 49W . . . F 2 -85.561 -22.383 -11.498 1 110.88 ? C38 49W 401 B 1 
HETATM 23 O O6 49W . . . F 2 -89.64 -21.171 -15.508 1 93.58 ? O6 49W 401 B 1 
HETATM 24 N N1 49W . . . F 2 -85.963 -24.545 -19.032 1 77.9 ? N1 49W 401 B 1 
HETATM 25 C C11 49W . . . F 2 -85.508 -25.725 -19.739 1 85.37 ? C11 49W 401 B 1 
HETATM 26 C C14 49W . . . F 2 -86.435 -26.878 -19.452 1 74.49 ? C14 49W 401 B 1 
HETATM 27 C C19 49W . . . F 2 -86.773 -26.937 -17.936 1 58.28 ? C19 49W 401 B 1 
HETATM 28 C C20 49W . . . F 2 -87.962 -26.389 -17.456 1 64.05 ? C20 49W 401 B 1 
HETATM 29 C C21 49W . . . F 2 -88.255 -26.445 -16.088 1 56.78 ? C21 49W 401 B 1 
HETATM 30 C C16 49W . . . F 2 -87.369 -27.046 -15.206 1 43.38 ? C16 49W 401 B 1 
HETATM 31 C C17 49W . . . F 2 -86.184 -27.594 -15.683 1 54.34 ? C17 49W 401 B 1 
HETATM 32 C C18 49W . . . F 2 -85.886 -27.541 -17.04 1 62.19 ? C18 49W 401 B 1 
HETATM 33 C C10 49W . . . F 2 -85.473 -25.486 -21.257 1 89.13 ? C10 49W 401 B 1 
HETATM 34 O O2 49W . . . F 2 -86.712 -24.993 -21.665 1 100.96 ? O2 49W 401 B 1 
HETATM 35 C C9 49W . . . F 2 -84.407 -24.493 -21.641 1 88.35 ? C9 49W 401 B 1 
HETATM 36 N N4 49W . . . F 2 -84.876 -23.761 -22.805 1 85.93 ? N4 49W 401 B 1 
HETATM 37 C C7 49W . . . F 2 -83.836 -22.892 -23.378 1 86.07 ? C7 49W 401 B 1 
HETATM 38 C C12 49W . . . F 2 -82.563 -23.696 -23.64 1 89.47 ? C12 49W 401 B 1 
HETATM 39 C C13 49W . . . F 2 -84.341 -22.313 -24.679 1 83.68 ? C13 49W 401 B 1 
HETATM 40 C C3 49W . . . F 2 -83.519 -21.699 -22.391 1 68.93 ? C3 49W 401 B 1 
HETATM 41 N N5 49W . . . F 2 -84.552 -21.116 -21.65 1 75.78 ? N5 49W 401 B 1 
HETATM 42 C C1 49W . . . F 2 -84.276 -20.068 -20.785 1 73.95 ? C1 49W 401 B 1 
HETATM 43 C C6 49W . . . F 2 -82.974 -19.596 -20.661 1 60.26 ? C6 49W 401 B 1 
HETATM 44 C C5 49W . . . F 2 -81.952 -20.174 -21.401 1 65.01 ? C5 49W 401 B 1 
HETATM 45 C C4 49W . . . F 2 -82.221 -21.227 -22.269 1 66.06 ? C4 49W 401 B 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           45 
#