data_4YAN # _model_server_result.job_id Wjk7lHL1YfRE45Z1y_q8LQ _model_server_result.datetime_utc '2024-10-10 04:17:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yan # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":300}' # _entry.id 4YAN # _exptl.entry_id 4YAN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 81.52 _cell.angle_gamma 90 _cell.entry_id 4YAN _cell.length_a 121.006 _cell.length_b 96.137 _cell.length_c 126.164 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YAN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 4YAN _atom_sites.fract_transf_matrix[1][1] 0.008264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.001233 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GSH A 1 300 300 GSH GSH . F 2 GSH B 1 300 300 GSH GSH . G 2 GSH C 1 300 300 GSH GSH . H 2 GSH D 1 300 300 GSH GSH . I 3 HOH A 1 401 55 HOH HOH . I 3 HOH A 2 402 77 HOH HOH . I 3 HOH A 3 403 101 HOH HOH . I 3 HOH A 4 404 30 HOH HOH . I 3 HOH A 5 405 161 HOH HOH . I 3 HOH A 6 406 20 HOH HOH . I 3 HOH A 7 407 83 HOH HOH . I 3 HOH A 8 408 5 HOH HOH . I 3 HOH A 9 409 6 HOH HOH . I 3 HOH A 10 410 7 HOH HOH . I 3 HOH A 11 411 12 HOH HOH . I 3 HOH A 12 412 16 HOH HOH . I 3 HOH A 13 413 29 HOH HOH . I 3 HOH A 14 414 32 HOH HOH . I 3 HOH A 15 415 38 HOH HOH . I 3 HOH A 16 416 47 HOH HOH . I 3 HOH A 17 417 49 HOH HOH . I 3 HOH A 18 418 59 HOH HOH . I 3 HOH A 19 419 66 HOH HOH . I 3 HOH A 20 420 67 HOH HOH . I 3 HOH A 21 421 72 HOH HOH . I 3 HOH A 22 422 75 HOH HOH . I 3 HOH A 23 423 86 HOH HOH . I 3 HOH A 24 424 87 HOH HOH . I 3 HOH A 25 425 88 HOH HOH . I 3 HOH A 26 426 89 HOH HOH . I 3 HOH A 27 427 91 HOH HOH . I 3 HOH A 28 428 99 HOH HOH . I 3 HOH A 29 429 104 HOH HOH . I 3 HOH A 30 430 107 HOH HOH . I 3 HOH A 31 431 112 HOH HOH . I 3 HOH A 32 432 113 HOH HOH . I 3 HOH A 33 433 116 HOH HOH . I 3 HOH A 34 434 124 HOH HOH . I 3 HOH A 35 435 125 HOH HOH . I 3 HOH A 36 436 133 HOH HOH . I 3 HOH A 37 437 141 HOH HOH . I 3 HOH A 38 438 145 HOH HOH . I 3 HOH A 39 439 146 HOH HOH . I 3 HOH A 40 440 148 HOH HOH . I 3 HOH A 41 441 152 HOH HOH . I 3 HOH A 42 442 154 HOH HOH . I 3 HOH A 43 443 158 HOH HOH . I 3 HOH A 44 444 160 HOH HOH . I 3 HOH A 45 445 164 HOH HOH . I 3 HOH A 46 446 166 HOH HOH . I 3 HOH A 47 447 167 HOH HOH . J 3 HOH B 1 401 37 HOH HOH . J 3 HOH B 2 402 74 HOH HOH . J 3 HOH B 3 403 162 HOH HOH . J 3 HOH B 4 404 26 HOH HOH . J 3 HOH B 5 405 90 HOH HOH . J 3 HOH B 6 406 95 HOH HOH . J 3 HOH B 7 407 8 HOH HOH . J 3 HOH B 8 408 9 HOH HOH . J 3 HOH B 9 409 11 HOH HOH . J 3 HOH B 10 410 13 HOH HOH . J 3 HOH B 11 411 17 HOH HOH . J 3 HOH B 12 412 22 HOH HOH . J 3 HOH B 13 413 27 HOH HOH . J 3 HOH B 14 414 35 HOH HOH . J 3 HOH B 15 415 36 HOH HOH . J 3 HOH B 16 416 41 HOH HOH . J 3 HOH B 17 417 42 HOH HOH . J 3 HOH B 18 418 52 HOH HOH . J 3 HOH B 19 419 65 HOH HOH . J 3 HOH B 20 420 73 HOH HOH . J 3 HOH B 21 421 76 HOH HOH . J 3 HOH B 22 422 78 HOH HOH . J 3 HOH B 23 423 79 HOH HOH . J 3 HOH B 24 424 80 HOH HOH . J 3 HOH B 25 425 81 HOH HOH . J 3 HOH B 26 426 92 HOH HOH . J 3 HOH B 27 427 94 HOH HOH . J 3 HOH B 28 428 96 HOH HOH . J 3 HOH B 29 429 100 HOH HOH . J 3 HOH B 30 430 102 HOH HOH . J 3 HOH B 31 431 109 HOH HOH . J 3 HOH B 32 432 117 HOH HOH . J 3 HOH B 33 433 118 HOH HOH . J 3 HOH B 34 434 120 HOH HOH . J 3 HOH B 35 435 122 HOH HOH . J 3 HOH B 36 436 123 HOH HOH . J 3 HOH B 37 437 126 HOH HOH . J 3 HOH B 38 438 127 HOH HOH . J 3 HOH B 39 439 129 HOH HOH . J 3 HOH B 40 440 137 HOH HOH . J 3 HOH B 41 441 139 HOH HOH . J 3 HOH B 42 442 150 HOH HOH . J 3 HOH B 43 443 165 HOH HOH . K 3 HOH C 1 401 93 HOH HOH . K 3 HOH C 2 402 10 HOH HOH . K 3 HOH C 3 403 138 HOH HOH . K 3 HOH C 4 404 2 HOH HOH . K 3 HOH C 5 405 1 HOH HOH . K 3 HOH C 6 406 3 HOH HOH . K 3 HOH C 7 407 4 HOH HOH . K 3 HOH C 8 408 23 HOH HOH . K 3 HOH C 9 409 33 HOH HOH . K 3 HOH C 10 410 34 HOH HOH . K 3 HOH C 11 411 39 HOH HOH . K 3 HOH C 12 412 40 HOH HOH . K 3 HOH C 13 413 50 HOH HOH . K 3 HOH C 14 414 51 HOH HOH . K 3 HOH C 15 415 54 HOH HOH . K 3 HOH C 16 416 61 HOH HOH . K 3 HOH C 17 417 62 HOH HOH . K 3 HOH C 18 418 63 HOH HOH . K 3 HOH C 19 419 70 HOH HOH . K 3 HOH C 20 420 82 HOH HOH . K 3 HOH C 21 421 85 HOH HOH . K 3 HOH C 22 422 103 HOH HOH . K 3 HOH C 23 423 105 HOH HOH . K 3 HOH C 24 424 110 HOH HOH . K 3 HOH C 25 425 114 HOH HOH . K 3 HOH C 26 426 115 HOH HOH . K 3 HOH C 27 427 119 HOH HOH . K 3 HOH C 28 428 121 HOH HOH . K 3 HOH C 29 429 135 HOH HOH . K 3 HOH C 30 430 136 HOH HOH . K 3 HOH C 31 431 140 HOH HOH . K 3 HOH C 32 432 142 HOH HOH . K 3 HOH C 33 433 143 HOH HOH . K 3 HOH C 34 434 147 HOH HOH . K 3 HOH C 35 435 153 HOH HOH . K 3 HOH C 36 436 156 HOH HOH . K 3 HOH C 37 437 163 HOH HOH . L 3 HOH D 1 401 108 HOH HOH . L 3 HOH D 2 402 84 HOH HOH . L 3 HOH D 3 403 106 HOH HOH . L 3 HOH D 4 404 128 HOH HOH . L 3 HOH D 5 405 14 HOH HOH . L 3 HOH D 6 406 15 HOH HOH . L 3 HOH D 7 407 18 HOH HOH . L 3 HOH D 8 408 19 HOH HOH . L 3 HOH D 9 409 21 HOH HOH . L 3 HOH D 10 410 25 HOH HOH . L 3 HOH D 11 411 28 HOH HOH . L 3 HOH D 12 412 31 HOH HOH . L 3 HOH D 13 413 43 HOH HOH . L 3 HOH D 14 414 44 HOH HOH . L 3 HOH D 15 415 45 HOH HOH . L 3 HOH D 16 416 46 HOH HOH . L 3 HOH D 17 417 48 HOH HOH . L 3 HOH D 18 418 53 HOH HOH . L 3 HOH D 19 419 56 HOH HOH . L 3 HOH D 20 420 57 HOH HOH . L 3 HOH D 21 421 58 HOH HOH . L 3 HOH D 22 422 64 HOH HOH . L 3 HOH D 23 423 68 HOH HOH . L 3 HOH D 24 424 69 HOH HOH . L 3 HOH D 25 425 71 HOH HOH . L 3 HOH D 26 426 97 HOH HOH . L 3 HOH D 27 427 98 HOH HOH . L 3 HOH D 28 428 111 HOH HOH . L 3 HOH D 29 429 130 HOH HOH . L 3 HOH D 30 430 131 HOH HOH . L 3 HOH D 31 431 132 HOH HOH . L 3 HOH D 32 432 134 HOH HOH . L 3 HOH D 33 433 144 HOH HOH . L 3 HOH D 34 434 149 HOH HOH . L 3 HOH D 35 435 151 HOH HOH . L 3 HOH D 36 436 155 HOH HOH . L 3 HOH D 37 437 157 HOH HOH . L 3 HOH D 38 438 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . F 2 11.53 46.497 36.546 1 147.56 ? N1 GSH 300 B 1 HETATM 2 C CA1 GSH . . . F 2 10.849 45.457 37.204 1 146.15 ? CA1 GSH 300 B 1 HETATM 3 C C1 GSH . . . F 2 9.862 44.803 36.255 1 146.72 ? C1 GSH 300 B 1 HETATM 4 O O11 GSH . . . F 2 8.98 45.504 35.682 1 146.7 ? O11 GSH 300 B 1 HETATM 5 O O12 GSH . . . F 2 9.922 43.556 36.04 1 146.59 ? O12 GSH 300 B 1 HETATM 6 C CB1 GSH . . . F 2 10.092 46.015 38.404 1 143.31 ? CB1 GSH 300 B 1 HETATM 7 C CG1 GSH . . . F 2 10.785 45.509 39.673 1 140.33 ? CG1 GSH 300 B 1 HETATM 8 C CD1 GSH . . . F 2 10.04 45.945 40.914 1 143.94 ? CD1 GSH 300 B 1 HETATM 9 O OE1 GSH . . . F 2 9.394 46.976 40.902 1 141.22 ? OE1 GSH 300 B 1 HETATM 10 N N2 GSH . . . F 2 10.114 45.114 42.12 1 144.13 ? N2 GSH 300 B 1 HETATM 11 C CA2 GSH . . . F 2 9.415 45.49 43.347 1 137.47 ? CA2 GSH 300 B 1 HETATM 12 C C2 GSH . . . F 2 10.439 45.683 44.457 1 136.37 ? C2 GSH 300 B 1 HETATM 13 O O2 GSH . . . F 2 11.294 44.839 44.645 1 135.72 ? O2 GSH 300 B 1 HETATM 14 C CB2 GSH . . . F 2 8.459 44.438 43.728 1 135.99 ? CB2 GSH 300 B 1 HETATM 15 S SG2 GSH . . . F 2 6.797 45.062 43.57 1 136.89 ? SG2 GSH 300 B 1 HETATM 16 N N3 GSH . . . F 2 10.384 46.874 45.26 1 137.15 ? N3 GSH 300 B 1 HETATM 17 C CA3 GSH . . . F 2 11.326 47.109 46.318 1 137.61 ? CA3 GSH 300 B 1 HETATM 18 C C3 GSH . . . F 2 12.741 47.081 45.776 1 137.86 ? C3 GSH 300 B 1 HETATM 19 O O31 GSH . . . F 2 13.041 47.769 44.766 1 138.01 ? O31 GSH 300 B 1 HETATM 20 O O32 GSH . . . F 2 13.609 46.371 46.334 1 137.6 ? O32 GSH 300 B 1 HETATM 21 H HN11 GSH . . . F 2 12.432 46.27 36.454 1 177.07 ? HN11 GSH 300 B 1 HETATM 22 H HN12 GSH . . . F 2 11.163 46.623 35.722 1 177.07 ? HN12 GSH 300 B 1 HETATM 23 H HA1 GSH . . . F 2 11.501 44.786 37.512 1 175.38 ? HA1 GSH 300 B 1 HETATM 24 H HB12 GSH . . . F 2 10.106 47.013 38.387 1 171.97 ? HB12 GSH 300 B 1 HETATM 25 H HB13 GSH . . . F 2 9.153 45.701 38.388 1 171.97 ? HB13 GSH 300 B 1 HETATM 26 H HG12 GSH . . . F 2 10.778 44.526 39.638 1 168.39 ? HG12 GSH 300 B 1 HETATM 27 H HG13 GSH . . . F 2 11.705 45.819 39.714 1 168.39 ? HG13 GSH 300 B 1 HETATM 28 H HN2 GSH . . . F 2 10.619 44.325 42.103 1 172.95 ? HN2 GSH 300 B 1 HETATM 29 H HA2 GSH . . . F 2 8.937 46.322 43.202 1 164.97 ? HA2 GSH 300 B 1 HETATM 30 H HB22 GSH . . . F 2 8.621 44.172 44.658 1 163.19 ? HB22 GSH 300 B 1 HETATM 31 H HB23 GSH . . . F 2 8.576 43.654 43.135 1 163.19 ? HB23 GSH 300 B 1 HETATM 32 H HSG GSH . . . F 2 6.02 44.21 43.868 1 164.27 ? HSG GSH 300 B 1 HETATM 33 H HN3 GSH . . . F 2 9.737 47.487 45.1 1 164.58 ? HN3 GSH 300 B 1 HETATM 34 H HA31 GSH . . . F 2 11.227 46.432 47.017 1 165.13 ? HA31 GSH 300 B 1 HETATM 35 H HA32 GSH . . . F 2 11.146 48.009 46.704 1 165.13 ? HA32 GSH 300 B 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 35 #