data_4YAY # _model_server_result.job_id iIo58YSeAMBzY7p9TLHleA _model_server_result.datetime_utc '2024-11-06 00:35:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 4YAY # _exptl.entry_id 4YAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 438.524 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5,7-diethyl-1-{[2'-(1H-tetrazol-5-yl)biphenyl-4-yl]methyl}-3,4-dihydro-1,6-naphthyridin-2(1H)-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.4 _cell.angle_gamma 90 _cell.entry_id 4YAY _cell.length_a 72.8 _cell.length_b 41 _cell.length_c 167.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 18 1_555 A SG CYS 369 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 196 A CYS 101 1_555 A SG CYS 275 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C26 H26 N6 O' _chem_comp.formula_weight 438.524 _chem_comp.id ZD7 _chem_comp.mon_nstd_flag . _chem_comp.name "5,7-diethyl-1-{[2'-(1H-tetrazol-5-yl)biphenyl-4-yl]methyl}-3,4-dihydro-1,6-naphthyridin-2(1H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C12 ZD7 doub 374 n n C11 C10 ZD7 sing 375 n n C11 C12 ZD7 sing 376 n n C10 C9 ZD7 sing 377 n n C12 N2 ZD7 sing 378 n n N2 C13 ZD7 sing 379 n n N2 C8 ZD7 sing 380 n n C9 C8 ZD7 doub 381 n y C9 C3 ZD7 sing 382 n y C2 C1 ZD7 sing 383 n n C2 C3 ZD7 sing 384 n n N4 N5 ZD7 doub 385 n y N4 N3 ZD7 sing 386 n y C13 C14 ZD7 sing 387 n n C8 C7 ZD7 sing 388 n y C3 N1 ZD7 doub 389 n y N5 N6 ZD7 sing 390 n y N3 C26 ZD7 sing 391 n y C14 C17 ZD7 doub 392 n y C14 C15 ZD7 sing 393 n y C17 C18 ZD7 sing 394 n y N1 C4 ZD7 sing 395 n y C15 C16 ZD7 doub 396 n y C7 C4 ZD7 doub 397 n y N6 C26 ZD7 doub 398 n y C26 C25 ZD7 sing 399 n n C4 C5 ZD7 sing 400 n n C18 C19 ZD7 doub 401 n y C16 C19 ZD7 sing 402 n y C19 C20 ZD7 sing 403 n n C5 C6 ZD7 sing 404 n n C25 C20 ZD7 doub 405 n y C25 C24 ZD7 sing 406 n y C20 C21 ZD7 sing 407 n y C24 C23 ZD7 doub 408 n y C21 C22 ZD7 doub 409 n y C23 C22 ZD7 sing 410 n y C2 H1 ZD7 sing 411 n n C2 H2 ZD7 sing 412 n n C1 H3 ZD7 sing 413 n n C1 H4 ZD7 sing 414 n n C1 H5 ZD7 sing 415 n n C10 H6 ZD7 sing 416 n n C10 H7 ZD7 sing 417 n n C11 H8 ZD7 sing 418 n n C11 H9 ZD7 sing 419 n n C13 H10 ZD7 sing 420 n n C13 H11 ZD7 sing 421 n n C15 H12 ZD7 sing 422 n n C16 H13 ZD7 sing 423 n n C17 H14 ZD7 sing 424 n n C18 H15 ZD7 sing 425 n n C21 H16 ZD7 sing 426 n n C22 H17 ZD7 sing 427 n n C23 H18 ZD7 sing 428 n n C24 H19 ZD7 sing 429 n n N3 H20 ZD7 sing 430 n n C5 H21 ZD7 sing 431 n n C5 H22 ZD7 sing 432 n n C6 H23 ZD7 sing 433 n n C6 H24 ZD7 sing 434 n n C6 H25 ZD7 sing 435 n n C7 H26 ZD7 sing 436 n n # _atom_sites.entry_id 4YAY _atom_sites.fract_transf_matrix[1][1] 0.013736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002274 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ZD7 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1201 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id ZD7 _pdbx_nonpoly_scheme.auth_mon_id RES _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 ZD7 . . . B 2 -16.923 14.423 41.882 1 61.26 ? C4 ZD7 1201 A 1 HETATM 2 C C3 ZD7 . . . B 2 -18.352 14.857 40.006 1 61.11 ? C3 ZD7 1201 A 1 HETATM 3 C C2 ZD7 . . . B 2 -19.35 15.798 39.371 1 60.76 ? C2 ZD7 1201 A 1 HETATM 4 C C1 ZD7 . . . B 2 -20.754 15.293 39.58 1 59.96 ? C1 ZD7 1201 A 1 HETATM 5 O O1 ZD7 . . . B 2 -17.068 9.796 37.654 1 52.76 ? O1 ZD7 1201 A 1 HETATM 6 N N1 ZD7 . . . B 2 -17.848 15.247 41.236 1 61.19 ? N1 ZD7 1201 A 1 HETATM 7 C C10 ZD7 . . . B 2 -18.455 13.136 37.967 1 57.97 ? C10 ZD7 1201 A 1 HETATM 8 C C11 ZD7 . . . B 2 -18.662 11.639 37.939 1 56.28 ? C11 ZD7 1201 A 1 HETATM 9 C C12 ZD7 . . . B 2 -17.389 10.953 38.299 1 55.24 ? C12 ZD7 1201 A 1 HETATM 10 C C13 ZD7 . . . B 2 -15.273 10.956 39.738 1 60.2 ? C13 ZD7 1201 A 1 HETATM 11 C C14 ZD7 . . . B 2 -15.285 9.813 40.75 1 59.84 ? C14 ZD7 1201 A 1 HETATM 12 C C15 ZD7 . . . B 2 -16.568 9.233 41.285 1 59.28 ? C15 ZD7 1201 A 1 HETATM 13 C C16 ZD7 . . . B 2 -16.521 8.199 42.218 1 59.45 ? C16 ZD7 1201 A 1 HETATM 14 C C17 ZD7 . . . B 2 -14.054 9.336 41.172 1 59.25 ? C17 ZD7 1201 A 1 HETATM 15 C C18 ZD7 . . . B 2 -14.005 8.228 42.198 1 59.04 ? C18 ZD7 1201 A 1 HETATM 16 C C19 ZD7 . . . B 2 -15.171 7.693 42.692 1 60.54 ? C19 ZD7 1201 A 1 HETATM 17 N N2 ZD7 . . . B 2 -16.562 11.514 39.304 1 59.29 ? N2 ZD7 1201 A 1 HETATM 18 C C20 ZD7 . . . B 2 -15.067 6.543 43.686 1 62.8 ? C20 ZD7 1201 A 1 HETATM 19 C C21 ZD7 . . . B 2 -15.522 6.712 44.973 1 61.33 ? C21 ZD7 1201 A 1 HETATM 20 C C22 ZD7 . . . B 2 -15.406 5.565 45.935 1 61.64 ? C22 ZD7 1201 A 1 HETATM 21 C C23 ZD7 . . . B 2 -14.846 4.37 45.545 1 62.17 ? C23 ZD7 1201 A 1 HETATM 22 C C24 ZD7 . . . B 2 -14.341 4.187 44.144 1 63.42 ? C24 ZD7 1201 A 1 HETATM 23 C C25 ZD7 . . . B 2 -14.446 5.227 43.253 1 64.43 ? C25 ZD7 1201 A 1 HETATM 24 C C26 ZD7 . . . B 2 -13.952 5.051 41.859 1 65.88 ? C26 ZD7 1201 A 1 HETATM 25 N N3 ZD7 . . . B 2 -14.695 5.291 40.673 1 66.08 ? N3 ZD7 1201 A 1 HETATM 26 N N4 ZD7 . . . B 2 -13.93 5.078 39.595 1 66.01 ? N4 ZD7 1201 A 1 HETATM 27 C C5 ZD7 . . . B 2 -16.393 14.832 43.228 1 61.35 ? C5 ZD7 1201 A 1 HETATM 28 N N5 ZD7 . . . B 2 -12.697 4.706 40.096 1 66.09 ? N5 ZD7 1201 A 1 HETATM 29 C C6 ZD7 . . . B 2 -17.292 14.304 44.302 1 61.22 ? C6 ZD7 1201 A 1 HETATM 30 N N6 ZD7 . . . B 2 -12.703 4.704 41.485 1 66.39 ? N6 ZD7 1201 A 1 HETATM 31 C C7 ZD7 . . . B 2 -16.469 13.205 41.302 1 60.93 ? C7 ZD7 1201 A 1 HETATM 32 C C8 ZD7 . . . B 2 -16.979 12.776 39.954 1 60.58 ? C8 ZD7 1201 A 1 HETATM 33 C C9 ZD7 . . . B 2 -17.899 13.576 39.336 1 59.96 ? C9 ZD7 1201 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #