data_4YB5
#
_model_server_result.job_id            AWeiM6VyTyGrZxj98uz-fg 
_model_server_result.datetime_utc      '2024-11-16 14:42:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yb5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":302}' 
#
_entry.id    4YB5 
#
_exptl.entry_id    4YB5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              39.098 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'POTASSIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.66 
_cell.angle_gamma         90 
_cell.entry_id            4YB5 
_cell.length_a            91.137 
_cell.length_b            123.216 
_cell.length_c            95.701 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YB5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 K N N 
? 3 M N N 
? 3 Q N N 
? 3 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ARG 161 A ARG 160 1_555 K K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? 
metalc ? metalc2 A O GLN 179 A GLN 178 1_555 I K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? 
metalc ? metalc3 A OD1 ASN 182 A ASN 181 1_555 I K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
metalc ? metalc4 I K K . A K 303 1_555 F O ARG 161 F ARG 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc5 K K K . A K 305 1_555 F O GLN 179 F GLN 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? 
metalc ? metalc6 K K K . A K 305 1_555 F OD1 ASN 182 F ASN 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
metalc ? metalc7 B O GLN 179 B GLN 178 1_555 M K K . B K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? 
metalc ? metalc8 B OD1 ASN 182 B ASN 181 1_555 M K K . B K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc9 M K K . B K 302 1_555 D O ARG 161 D ARG 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
metalc ? metalc10 C O ARG 161 C ARG 160 1_555 S K K . C K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? 
metalc ? metalc11 C O GLN 179 C GLN 178 1_555 Q K K . C K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc12 C OD1 ASN 182 C ASN 181 1_555 Q K K . C K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc13 Q K K . C K 303 1_555 E O ARG 161 E ARG 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? 
metalc ? metalc14 S K K . C K 305 1_555 E O GLN 179 E GLN 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? 
metalc ? metalc15 S K K . C K 305 1_555 E OD1 ASN 182 E ASN 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? 
#
_chem_comp.formula           'K 1' 
_chem_comp.formula_weight    39.098 
_chem_comp.id                K 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'POTASSIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4YB5 
_atom_sites.fract_transf_matrix[1][1]    0.010972 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004137 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008116 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011167 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 SCN A 1 301 1 SCN SCN . 
H 2 SCN A 1 302 7 SCN SCN . 
I 3 K A 1 303 5 K K . 
J 4 HIS A 1 304 4 HIS HIS . 
K 3 K A 1 305 1 K K . 
L 2 SCN B 1 301 5 SCN SCN . 
M 3 K B 1 302 3 K K . 
N 4 HIS B 1 303 5 HIS HIS . 
O 2 SCN C 1 301 2 SCN SCN . 
P 5 PGE C 1 302 3 PGE PGE . 
Q 3 K C 1 303 4 K K . 
R 4 HIS C 1 304 6 HIS HIS . 
S 3 K C 1 305 2 K K . 
T 6 PEG D 1 301 1 PEG PEG . 
U 4 HIS D 1 302 1 HIS HIS . 
V 2 SCN E 1 301 3 SCN SCN . 
W 2 SCN E 1 302 6 SCN SCN . 
X 4 HIS E 1 303 2 HIS HIS . 
Y 2 SCN F 1 301 4 SCN SCN . 
Z 2 SCN F 1 302 9 SCN SCN . 
AA 6 PEG F 1 303 2 PEG PEG . 
BA 4 HIS F 1 304 3 HIS HIS . 
CA 7 HOH A 1 401 66 HOH HOH . 
CA 7 HOH A 2 402 23 HOH HOH . 
CA 7 HOH A 3 403 7 HOH HOH . 
CA 7 HOH A 4 404 10 HOH HOH . 
CA 7 HOH A 5 405 11 HOH HOH . 
CA 7 HOH A 6 406 14 HOH HOH . 
CA 7 HOH A 7 407 19 HOH HOH . 
CA 7 HOH A 8 408 34 HOH HOH . 
CA 7 HOH A 9 409 36 HOH HOH . 
CA 7 HOH A 10 410 46 HOH HOH . 
CA 7 HOH A 11 411 55 HOH HOH . 
CA 7 HOH A 12 412 56 HOH HOH . 
CA 7 HOH A 13 413 83 HOH HOH . 
CA 7 HOH A 14 414 92 HOH HOH . 
CA 7 HOH A 15 415 96 HOH HOH . 
CA 7 HOH A 16 416 103 HOH HOH . 
CA 7 HOH A 17 417 126 HOH HOH . 
CA 7 HOH A 18 418 143 HOH HOH . 
CA 7 HOH A 19 419 144 HOH HOH . 
DA 7 HOH B 1 401 24 HOH HOH . 
DA 7 HOH B 2 402 28 HOH HOH . 
DA 7 HOH B 3 403 39 HOH HOH . 
DA 7 HOH B 4 404 40 HOH HOH . 
DA 7 HOH B 5 405 47 HOH HOH . 
DA 7 HOH B 6 406 54 HOH HOH . 
DA 7 HOH B 7 407 61 HOH HOH . 
DA 7 HOH B 8 408 73 HOH HOH . 
DA 7 HOH B 9 409 74 HOH HOH . 
DA 7 HOH B 10 410 79 HOH HOH . 
DA 7 HOH B 11 411 82 HOH HOH . 
DA 7 HOH B 12 412 87 HOH HOH . 
DA 7 HOH B 13 413 93 HOH HOH . 
DA 7 HOH B 14 414 95 HOH HOH . 
DA 7 HOH B 15 415 98 HOH HOH . 
DA 7 HOH B 16 416 104 HOH HOH . 
DA 7 HOH B 17 417 108 HOH HOH . 
DA 7 HOH B 18 418 112 HOH HOH . 
DA 7 HOH B 19 419 124 HOH HOH . 
DA 7 HOH B 20 420 132 HOH HOH . 
DA 7 HOH B 21 421 147 HOH HOH . 
EA 7 HOH C 1 401 81 HOH HOH . 
EA 7 HOH C 2 402 5 HOH HOH . 
EA 7 HOH C 3 403 17 HOH HOH . 
EA 7 HOH C 4 404 29 HOH HOH . 
EA 7 HOH C 5 405 43 HOH HOH . 
EA 7 HOH C 6 406 69 HOH HOH . 
EA 7 HOH C 7 407 71 HOH HOH . 
EA 7 HOH C 8 408 75 HOH HOH . 
EA 7 HOH C 9 409 76 HOH HOH . 
EA 7 HOH C 10 410 80 HOH HOH . 
EA 7 HOH C 11 411 85 HOH HOH . 
EA 7 HOH C 12 412 89 HOH HOH . 
EA 7 HOH C 13 413 94 HOH HOH . 
EA 7 HOH C 14 414 111 HOH HOH . 
EA 7 HOH C 15 415 127 HOH HOH . 
EA 7 HOH C 16 416 133 HOH HOH . 
EA 7 HOH C 17 417 134 HOH HOH . 
EA 7 HOH C 18 418 138 HOH HOH . 
FA 7 HOH D 1 401 32 HOH HOH . 
FA 7 HOH D 2 402 97 HOH HOH . 
FA 7 HOH D 3 403 13 HOH HOH . 
FA 7 HOH D 4 404 16 HOH HOH . 
FA 7 HOH D 5 405 25 HOH HOH . 
FA 7 HOH D 6 406 27 HOH HOH . 
FA 7 HOH D 7 407 41 HOH HOH . 
FA 7 HOH D 8 408 42 HOH HOH . 
FA 7 HOH D 9 409 48 HOH HOH . 
FA 7 HOH D 10 410 49 HOH HOH . 
FA 7 HOH D 11 411 50 HOH HOH . 
FA 7 HOH D 12 412 51 HOH HOH . 
FA 7 HOH D 13 413 60 HOH HOH . 
FA 7 HOH D 14 414 65 HOH HOH . 
FA 7 HOH D 15 415 68 HOH HOH . 
FA 7 HOH D 16 416 70 HOH HOH . 
FA 7 HOH D 17 417 90 HOH HOH . 
FA 7 HOH D 18 418 91 HOH HOH . 
FA 7 HOH D 19 419 100 HOH HOH . 
FA 7 HOH D 20 420 110 HOH HOH . 
FA 7 HOH D 21 421 114 HOH HOH . 
FA 7 HOH D 22 422 115 HOH HOH . 
FA 7 HOH D 23 423 116 HOH HOH . 
FA 7 HOH D 24 424 135 HOH HOH . 
FA 7 HOH D 25 425 136 HOH HOH . 
FA 7 HOH D 26 426 137 HOH HOH . 
FA 7 HOH D 27 427 139 HOH HOH . 
GA 7 HOH E 1 401 119 HOH HOH . 
GA 7 HOH E 2 402 120 HOH HOH . 
GA 7 HOH E 3 403 21 HOH HOH . 
GA 7 HOH E 4 404 8 HOH HOH . 
GA 7 HOH E 5 405 18 HOH HOH . 
GA 7 HOH E 6 406 52 HOH HOH . 
GA 7 HOH E 7 407 57 HOH HOH . 
GA 7 HOH E 8 408 58 HOH HOH . 
GA 7 HOH E 9 409 62 HOH HOH . 
GA 7 HOH E 10 410 64 HOH HOH . 
GA 7 HOH E 11 411 67 HOH HOH . 
GA 7 HOH E 12 412 72 HOH HOH . 
GA 7 HOH E 13 413 78 HOH HOH . 
GA 7 HOH E 14 414 99 HOH HOH . 
GA 7 HOH E 15 415 105 HOH HOH . 
GA 7 HOH E 16 416 125 HOH HOH . 
GA 7 HOH E 17 417 128 HOH HOH . 
GA 7 HOH E 18 418 129 HOH HOH . 
GA 7 HOH E 19 419 130 HOH HOH . 
GA 7 HOH E 20 420 131 HOH HOH . 
GA 7 HOH E 21 421 141 HOH HOH . 
GA 7 HOH E 22 422 142 HOH HOH . 
HA 7 HOH F 1 401 9 HOH HOH . 
HA 7 HOH F 2 402 12 HOH HOH . 
HA 7 HOH F 3 403 15 HOH HOH . 
HA 7 HOH F 4 404 20 HOH HOH . 
HA 7 HOH F 5 405 26 HOH HOH . 
HA 7 HOH F 6 406 31 HOH HOH . 
HA 7 HOH F 7 407 35 HOH HOH . 
HA 7 HOH F 8 408 59 HOH HOH . 
HA 7 HOH F 9 409 63 HOH HOH . 
HA 7 HOH F 10 410 77 HOH HOH . 
HA 7 HOH F 11 411 86 HOH HOH . 
HA 7 HOH F 12 412 88 HOH HOH . 
HA 7 HOH F 13 413 102 HOH HOH . 
HA 7 HOH F 14 414 106 HOH HOH . 
HA 7 HOH F 15 415 107 HOH HOH . 
HA 7 HOH F 16 416 109 HOH HOH . 
HA 7 HOH F 17 417 113 HOH HOH . 
HA 7 HOH F 18 418 118 HOH HOH . 
HA 7 HOH F 19 419 140 HOH HOH . 
HA 7 HOH F 20 420 145 HOH HOH . 
HA 7 HOH F 21 421 146 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           K 
_atom_site.label_atom_id         K 
_atom_site.label_comp_id         K 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         M 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -44.732 
_atom_site.Cartn_y               -27.779 
_atom_site.Cartn_z               -14.193 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        80.09 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          K 
_atom_site.auth_comp_id          K 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#