data_4YBJ # _model_server_result.job_id a0Y2TNEe1Q1XPBi-WdiOTQ _model_server_result.datetime_utc '2024-11-15 05:41:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ybj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4YBJ # _exptl.entry_id 4YBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 626.653 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-({6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl}amino)-N-(3-{[3-(trifluoromethyl)benzoyl]amino}phenyl)-1,3-thiazole-5-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.26 _cell.angle_gamma 90 _cell.entry_id 4YBJ _cell.length_a 42.117 _cell.length_b 120.062 _cell.length_c 63.319 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C29 H29 F3 N8 O3 S' _chem_comp.formula_weight 626.653 _chem_comp.id 4A9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-({6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl}amino)-N-(3-{[3-(trifluoromethyl)benzoyl]amino}phenyl)-1,3-thiazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F3 C11 4A9 sing 1 n n F2 C11 4A9 sing 2 n n C11 F1 4A9 sing 3 n n C11 C10 4A9 sing 4 n n C10 C12 4A9 doub 5 n y C10 C9 4A9 sing 6 n y C12 C13 4A9 sing 7 n y C9 C8 4A9 doub 8 n y C13 C14 4A9 doub 9 n y C8 C14 4A9 sing 10 n y C8 C7 4A9 sing 11 n n C7 N2 4A9 sing 12 n n C7 O2 4A9 doub 13 n n N2 C6 4A9 sing 14 n n C6 C15 4A9 doub 15 n y C6 C5 4A9 sing 16 n y C15 C2 4A9 sing 17 n y C5 C4 4A9 doub 18 n y C2 N1 4A9 sing 19 n n C2 C3 4A9 doub 20 n y C17 N3 4A9 sing 21 n y C17 C16 4A9 doub 22 n y N1 C1 4A9 sing 23 n n C4 C3 4A9 sing 24 n y N3 C18 4A9 doub 25 n y C1 C16 4A9 sing 26 n n C1 O1 4A9 doub 27 n n C16 S 4A9 sing 28 n y C18 N4 4A9 sing 29 n n C18 S 4A9 sing 30 n y N4 C19 4A9 sing 31 n n C19 C29 4A9 doub 32 n y C19 N5 4A9 sing 33 n y C29 C22 4A9 sing 34 n y N5 C20 4A9 doub 35 n y C28 N7 4A9 sing 36 n n C28 C27 4A9 sing 37 n n C22 N7 4A9 sing 38 n n C22 N6 4A9 doub 39 n y C20 N6 4A9 sing 40 n y C20 C21 4A9 sing 41 n n N7 C23 4A9 sing 42 n n C27 N8 4A9 sing 43 n n C23 C24 4A9 sing 44 n n N8 C24 4A9 sing 45 n n N8 C25 4A9 sing 46 n n C25 C26 4A9 sing 47 n n C26 O3 4A9 sing 48 n n C14 H10 4A9 sing 49 n n C13 H9 4A9 sing 50 n n C12 H8 4A9 sing 51 n n C9 H7 4A9 sing 52 n n N2 H6 4A9 sing 53 n n C5 H5 4A9 sing 54 n n C4 H4 4A9 sing 55 n n C3 H3 4A9 sing 56 n n C15 H11 4A9 sing 57 n n N1 H2 4A9 sing 58 n n C17 H12 4A9 sing 59 n n N4 H13 4A9 sing 60 n n C29 H30 4A9 sing 61 n n C21 H15 4A9 sing 62 n n C21 H16 4A9 sing 63 n n C21 H14 4A9 sing 64 n n C28 H29 4A9 sing 65 n n C28 H28 4A9 sing 66 n n C27 H27 4A9 sing 67 n n C27 H26 4A9 sing 68 n n C24 H19 4A9 sing 69 n n C24 H20 4A9 sing 70 n n C23 H18 4A9 sing 71 n n C23 H17 4A9 sing 72 n n C25 H22 4A9 sing 73 n n C25 H21 4A9 sing 74 n n C26 H23 4A9 sing 75 n n C26 H24 4A9 sing 76 n n O3 H25 4A9 sing 77 n n # _atom_sites.entry_id 4YBJ _atom_sites.fract_transf_matrix[1][1] 0.023743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000108 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4A9 A 1 601 1 4A9 UNL . D 2 4A9 B 1 601 1 4A9 UNL . E 3 HOH A 1 701 27 HOH HOH . E 3 HOH A 2 702 10 HOH HOH . E 3 HOH A 3 703 21 HOH HOH . E 3 HOH A 4 704 12 HOH HOH . E 3 HOH A 5 705 2 HOH HOH . E 3 HOH A 6 706 3 HOH HOH . E 3 HOH A 7 707 4 HOH HOH . E 3 HOH A 8 708 5 HOH HOH . E 3 HOH A 9 709 6 HOH HOH . E 3 HOH A 10 710 7 HOH HOH . E 3 HOH A 11 711 8 HOH HOH . E 3 HOH A 12 712 9 HOH HOH . E 3 HOH A 13 713 11 HOH HOH . E 3 HOH A 14 714 13 HOH HOH . E 3 HOH A 15 715 14 HOH HOH . E 3 HOH A 16 716 15 HOH HOH . E 3 HOH A 17 717 16 HOH HOH . E 3 HOH A 18 718 17 HOH HOH . E 3 HOH A 19 719 18 HOH HOH . E 3 HOH A 20 720 19 HOH HOH . E 3 HOH A 21 721 20 HOH HOH . E 3 HOH A 22 722 23 HOH HOH . E 3 HOH A 23 723 24 HOH HOH . E 3 HOH A 24 724 25 HOH HOH . E 3 HOH A 25 725 26 HOH HOH . E 3 HOH A 26 726 28 HOH HOH . E 3 HOH A 27 727 29 HOH HOH . E 3 HOH A 28 728 30 HOH HOH . E 3 HOH A 29 729 31 HOH HOH . E 3 HOH A 30 730 30 HOH HOH . F 3 HOH B 1 701 9 HOH HOH . F 3 HOH B 2 702 29 HOH HOH . F 3 HOH B 3 703 32 HOH HOH . F 3 HOH B 4 704 27 HOH HOH . F 3 HOH B 5 705 22 HOH HOH . F 3 HOH B 6 706 2 HOH HOH . F 3 HOH B 7 707 3 HOH HOH . F 3 HOH B 8 708 4 HOH HOH . F 3 HOH B 9 709 5 HOH HOH . F 3 HOH B 10 710 6 HOH HOH . F 3 HOH B 11 711 7 HOH HOH . F 3 HOH B 12 712 8 HOH HOH . F 3 HOH B 13 713 10 HOH HOH . F 3 HOH B 14 714 11 HOH HOH . F 3 HOH B 15 715 12 HOH HOH . F 3 HOH B 16 716 13 HOH HOH . F 3 HOH B 17 717 14 HOH HOH . F 3 HOH B 18 718 15 HOH HOH . F 3 HOH B 19 719 16 HOH HOH . F 3 HOH B 20 720 17 HOH HOH . F 3 HOH B 21 721 18 HOH HOH . F 3 HOH B 22 722 19 HOH HOH . F 3 HOH B 23 723 20 HOH HOH . F 3 HOH B 24 724 21 HOH HOH . F 3 HOH B 25 725 22 HOH HOH . F 3 HOH B 26 726 23 HOH HOH . F 3 HOH B 27 727 24 HOH HOH . F 3 HOH B 28 728 25 HOH HOH . F 3 HOH B 29 729 26 HOH HOH . F 3 HOH B 30 730 28 HOH HOH . F 3 HOH B 31 731 31 HOH HOH . F 3 HOH B 32 732 33 HOH HOH . F 3 HOH B 33 733 34 HOH HOH . F 3 HOH B 34 734 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 4A9 . . . C 2 18.411 6.419 95.895 1 50.25 ? O2 4A9 601 A 1 HETATM 2 C C7 4A9 . . . C 2 19.018 7.345 95.389 1 49.03 ? C7 4A9 601 A 1 HETATM 3 C C8 4A9 . . . C 2 20.055 7.107 94.337 1 49.5 ? C8 4A9 601 A 1 HETATM 4 C C14 4A9 . . . C 2 21.391 7.48 94.556 1 49.58 ? C14 4A9 601 A 1 HETATM 5 C C13 4A9 . . . C 2 22.355 7.272 93.562 1 49.59 ? C13 4A9 601 A 1 HETATM 6 C C12 4A9 . . . C 2 22.002 6.639 92.37 1 49.91 ? C12 4A9 601 A 1 HETATM 7 C C10 4A9 . . . C 2 20.664 6.239 92.17 1 49.84 ? C10 4A9 601 A 1 HETATM 8 C C11 4A9 . . . C 2 20.34 5.46 90.911 1 49.27 ? C11 4A9 601 A 1 HETATM 9 F F3 4A9 . . . C 2 21.241 5.604 89.929 1 48.32 ? F3 4A9 601 A 1 HETATM 10 F F2 4A9 . . . C 2 19.165 5.816 90.373 1 49.54 ? F2 4A9 601 A 1 HETATM 11 F F1 4A9 . . . C 2 20.264 4.14 91.083 1 50.02 ? F1 4A9 601 A 1 HETATM 12 C C9 4A9 . . . C 2 19.674 6.489 93.137 1 49.86 ? C9 4A9 601 A 1 HETATM 13 N N2 4A9 . . . C 2 18.833 8.701 95.72 1 47.79 ? N2 4A9 601 A 1 HETATM 14 C C6 4A9 . . . C 2 17.928 9.27 96.669 1 46.87 ? C6 4A9 601 A 1 HETATM 15 C C5 4A9 . . . C 2 18.222 10.474 97.333 1 46.56 ? C5 4A9 601 A 1 HETATM 16 C C4 4A9 . . . C 2 17.29 11.02 98.221 1 46.46 ? C4 4A9 601 A 1 HETATM 17 C C3 4A9 . . . C 2 16.074 10.412 98.486 1 46.32 ? C3 4A9 601 A 1 HETATM 18 C C15 4A9 . . . C 2 16.68 8.632 96.923 1 46.31 ? C15 4A9 601 A 1 HETATM 19 C C2 4A9 . . . C 2 15.779 9.217 97.831 1 46.16 ? C2 4A9 601 A 1 HETATM 20 N N1 4A9 . . . C 2 14.561 8.559 98.053 1 45.02 ? N1 4A9 601 A 1 HETATM 21 C C1 4A9 . . . C 2 14.457 7.329 98.708 1 43.45 ? C1 4A9 601 A 1 HETATM 22 O O1 4A9 . . . C 2 15.413 6.727 99.181 1 43.2 ? O1 4A9 601 A 1 HETATM 23 C C16 4A9 . . . C 2 13.092 6.825 98.812 1 42.73 ? C16 4A9 601 A 1 HETATM 24 C C17 4A9 . . . C 2 12.078 7.033 97.898 1 42.26 ? C17 4A9 601 A 1 HETATM 25 N N3 4A9 . . . C 2 10.871 6.422 98.235 1 41.96 ? N3 4A9 601 A 1 HETATM 26 C C18 4A9 . . . C 2 11.044 5.758 99.404 1 42.34 ? C18 4A9 601 A 1 HETATM 27 S S 4A9 . . . C 2 12.617 5.872 100.104 1 42.57 ? S 4A9 601 A 1 HETATM 28 N N4 4A9 . . . C 2 9.955 5.043 99.951 1 43.62 ? N4 4A9 601 A 1 HETATM 29 C C19 4A9 . . . C 2 9.978 4.286 101.135 1 45.44 ? C19 4A9 601 A 1 HETATM 30 C C29 4A9 . . . C 2 8.779 3.644 101.555 1 46.71 ? C29 4A9 601 A 1 HETATM 31 C C22 4A9 . . . C 2 8.894 2.78 102.674 1 48.86 ? C22 4A9 601 A 1 HETATM 32 N N6 4A9 . . . C 2 10.09 2.583 103.362 1 48.53 ? N6 4A9 601 A 1 HETATM 33 C C20 4A9 . . . C 2 11.174 3.273 102.899 1 47.32 ? C20 4A9 601 A 1 HETATM 34 C C21 4A9 . . . C 2 12.445 3.102 103.685 1 46.95 ? C21 4A9 601 A 1 HETATM 35 N N5 4A9 . . . C 2 11.187 4.109 101.816 1 46.32 ? N5 4A9 601 A 1 HETATM 36 N N7 4A9 . . . C 2 7.81 1.999 103.164 1 51.1 ? N7 4A9 601 A 1 HETATM 37 C C28 4A9 . . . C 2 6.569 1.749 102.416 1 52.36 ? C28 4A9 601 A 1 HETATM 38 C C27 4A9 . . . C 2 5.477 2.474 103.188 1 53.67 ? C27 4A9 601 A 1 HETATM 39 N N8 4A9 . . . C 2 5.367 1.867 104.552 1 54.59 1 N8 4A9 601 A 1 HETATM 40 C C24 4A9 . . . C 2 6.663 2.012 105.284 1 53.32 ? C24 4A9 601 A 1 HETATM 41 C C23 4A9 . . . C 2 7.765 1.344 104.476 1 51.8 ? C23 4A9 601 A 1 HETATM 42 C C25 4A9 . . . C 2 4.177 2.346 105.345 1 56.09 ? C25 4A9 601 A 1 HETATM 43 C C26 4A9 . . . C 2 4.14 3.845 105.564 1 57.32 ? C26 4A9 601 A 1 HETATM 44 O O3 4A9 . . . C 2 4.991 4.222 106.632 1 58.26 ? O3 4A9 601 A 1 HETATM 45 H H1 4A9 . . . C 2 5.226 0.87 104.421 0 54.53 ? H1 4A9 601 A 1 HETATM 46 H H10 4A9 . . . C 2 21.708 7.835 95.533 0 49.53 ? H10 4A9 601 A 1 HETATM 47 H H9 4A9 . . . C 2 23.379 7.615 93.705 0 49.61 ? H9 4A9 601 A 1 HETATM 48 H H8 4A9 . . . C 2 22.765 6.442 91.62 0 49.94 ? H8 4A9 601 A 1 HETATM 49 H H7 4A9 . . . C 2 18.63 6.227 92.972 0 49.83 ? H7 4A9 601 A 1 HETATM 50 H H6 4A9 . . . C 2 19.417 9.378 95.239 0 47.63 ? H6 4A9 601 A 1 HETATM 51 H H5 4A9 . . . C 2 19.152 11.018 97.175 0 46.42 ? H5 4A9 601 A 1 HETATM 52 H H4 4A9 . . . C 2 17.521 11.953 98.732 0 46.35 ? H4 4A9 601 A 1 HETATM 53 H H3 4A9 . . . C 2 15.389 10.862 99.203 0 46.29 ? H3 4A9 601 A 1 HETATM 54 H H11 4A9 . . . C 2 16.392 7.713 96.417 0 46.35 ? H11 4A9 601 A 1 HETATM 55 H H2 4A9 . . . C 2 13.735 9.059 97.743 0 45.04 ? H2 4A9 601 A 1 HETATM 56 H H12 4A9 . . . C 2 12.141 7.607 96.975 0 42.29 ? H12 4A9 601 A 1 HETATM 57 H H13 4A9 . . . C 2 9.094 5.082 99.414 0 43.54 ? H13 4A9 601 A 1 HETATM 58 H H30 4A9 . . . C 2 7.838 3.844 101.048 0 46.65 ? H30 4A9 601 A 1 HETATM 59 H H15 4A9 . . . C 2 13.287 3.514 103.13 0 46.92 ? H15 4A9 601 A 1 HETATM 60 H H16 4A9 . . . C 2 12.66 2.05 103.862 0 46.92 ? H16 4A9 601 A 1 HETATM 61 H H14 4A9 . . . C 2 12.42 3.598 104.654 0 46.92 ? H14 4A9 601 A 1 HETATM 62 H H29 4A9 . . . C 2 6.629 2.037 101.369 0 52.3 ? H29 4A9 601 A 1 HETATM 63 H H28 4A9 . . . C 2 6.328 0.688 102.368 0 52.3 ? H28 4A9 601 A 1 HETATM 64 H H27 4A9 . . . C 2 4.531 2.439 102.65 0 53.63 ? H27 4A9 601 A 1 HETATM 65 H H26 4A9 . . . C 2 5.703 3.537 103.253 0 53.63 ? H26 4A9 601 A 1 HETATM 66 H H19 4A9 . . . C 2 6.91 3.059 105.448 0 53.26 ? H19 4A9 601 A 1 HETATM 67 H H20 4A9 . . . C 2 6.589 1.614 106.295 0 53.26 ? H20 4A9 601 A 1 HETATM 68 H H18 4A9 . . . C 2 7.575 0.278 104.356 0 51.74 ? H18 4A9 601 A 1 HETATM 69 H H17 4A9 . . . C 2 8.707 1.4 105.02 0 51.74 ? H17 4A9 601 A 1 HETATM 70 H H22 4A9 . . . C 2 3.251 2.032 104.868 0 56.06 ? H22 4A9 601 A 1 HETATM 71 H H21 4A9 . . . C 2 4.185 1.825 106.302 0 56.06 ? H21 4A9 601 A 1 HETATM 72 H H23 4A9 . . . C 2 4.466 4.436 104.71 0 57.29 ? H23 4A9 601 A 1 HETATM 73 H H24 4A9 . . . C 2 3.104 4.135 105.729 0 57.29 ? H24 4A9 601 A 1 HETATM 74 H H25 4A9 . . . C 2 4.582 4.996 107.101 0 58.2 ? H25 4A9 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 69 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 539 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 74 #