data_4YBJ
#
_model_server_result.job_id            bMYF7HYCirtyHfXsBV2YBQ 
_model_server_result.datetime_utc      '2024-11-15 05:35:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ybj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    4YBJ 
#
_exptl.entry_id    4YBJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              626.653 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-({6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl}amino)-N-(3-{[3-(trifluoromethyl)benzoyl]amino}phenyl)-1,3-thiazole-5-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.26 
_cell.angle_gamma         90 
_cell.entry_id            4YBJ 
_cell.length_a            42.117 
_cell.length_b            120.062 
_cell.length_c            63.319 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YBJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C29 H29 F3 N8 O3 S' 
_chem_comp.formula_weight    626.653 
_chem_comp.id                4A9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-({6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl}amino)-N-(3-{[3-(trifluoromethyl)benzoyl]amino}phenyl)-1,3-thiazole-5-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F3 C11 4A9 sing 1 n n 
F2 C11 4A9 sing 2 n n 
C11 F1 4A9 sing 3 n n 
C11 C10 4A9 sing 4 n n 
C10 C12 4A9 doub 5 n y 
C10 C9 4A9 sing 6 n y 
C12 C13 4A9 sing 7 n y 
C9 C8 4A9 doub 8 n y 
C13 C14 4A9 doub 9 n y 
C8 C14 4A9 sing 10 n y 
C8 C7 4A9 sing 11 n n 
C7 N2 4A9 sing 12 n n 
C7 O2 4A9 doub 13 n n 
N2 C6 4A9 sing 14 n n 
C6 C15 4A9 doub 15 n y 
C6 C5 4A9 sing 16 n y 
C15 C2 4A9 sing 17 n y 
C5 C4 4A9 doub 18 n y 
C2 N1 4A9 sing 19 n n 
C2 C3 4A9 doub 20 n y 
C17 N3 4A9 sing 21 n y 
C17 C16 4A9 doub 22 n y 
N1 C1 4A9 sing 23 n n 
C4 C3 4A9 sing 24 n y 
N3 C18 4A9 doub 25 n y 
C1 C16 4A9 sing 26 n n 
C1 O1 4A9 doub 27 n n 
C16 S 4A9 sing 28 n y 
C18 N4 4A9 sing 29 n n 
C18 S 4A9 sing 30 n y 
N4 C19 4A9 sing 31 n n 
C19 C29 4A9 doub 32 n y 
C19 N5 4A9 sing 33 n y 
C29 C22 4A9 sing 34 n y 
N5 C20 4A9 doub 35 n y 
C28 N7 4A9 sing 36 n n 
C28 C27 4A9 sing 37 n n 
C22 N7 4A9 sing 38 n n 
C22 N6 4A9 doub 39 n y 
C20 N6 4A9 sing 40 n y 
C20 C21 4A9 sing 41 n n 
N7 C23 4A9 sing 42 n n 
C27 N8 4A9 sing 43 n n 
C23 C24 4A9 sing 44 n n 
N8 C24 4A9 sing 45 n n 
N8 C25 4A9 sing 46 n n 
C25 C26 4A9 sing 47 n n 
C26 O3 4A9 sing 48 n n 
C14 H10 4A9 sing 49 n n 
C13 H9 4A9 sing 50 n n 
C12 H8 4A9 sing 51 n n 
C9 H7 4A9 sing 52 n n 
N2 H6 4A9 sing 53 n n 
C5 H5 4A9 sing 54 n n 
C4 H4 4A9 sing 55 n n 
C3 H3 4A9 sing 56 n n 
C15 H11 4A9 sing 57 n n 
N1 H2 4A9 sing 58 n n 
C17 H12 4A9 sing 59 n n 
N4 H13 4A9 sing 60 n n 
C29 H30 4A9 sing 61 n n 
C21 H15 4A9 sing 62 n n 
C21 H16 4A9 sing 63 n n 
C21 H14 4A9 sing 64 n n 
C28 H29 4A9 sing 65 n n 
C28 H28 4A9 sing 66 n n 
C27 H27 4A9 sing 67 n n 
C27 H26 4A9 sing 68 n n 
C24 H19 4A9 sing 69 n n 
C24 H20 4A9 sing 70 n n 
C23 H18 4A9 sing 71 n n 
C23 H17 4A9 sing 72 n n 
C25 H22 4A9 sing 73 n n 
C25 H21 4A9 sing 74 n n 
C26 H23 4A9 sing 75 n n 
C26 H24 4A9 sing 76 n n 
O3 H25 4A9 sing 77 n n 
#
_atom_sites.entry_id                     4YBJ 
_atom_sites.fract_transf_matrix[1][1]    0.023743 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000108 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008329 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015793 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4A9 A 1 601 1 4A9 UNL . 
D 2 4A9 B 1 601 1 4A9 UNL . 
E 3 HOH A 1 701 27 HOH HOH . 
E 3 HOH A 2 702 10 HOH HOH . 
E 3 HOH A 3 703 21 HOH HOH . 
E 3 HOH A 4 704 12 HOH HOH . 
E 3 HOH A 5 705 2 HOH HOH . 
E 3 HOH A 6 706 3 HOH HOH . 
E 3 HOH A 7 707 4 HOH HOH . 
E 3 HOH A 8 708 5 HOH HOH . 
E 3 HOH A 9 709 6 HOH HOH . 
E 3 HOH A 10 710 7 HOH HOH . 
E 3 HOH A 11 711 8 HOH HOH . 
E 3 HOH A 12 712 9 HOH HOH . 
E 3 HOH A 13 713 11 HOH HOH . 
E 3 HOH A 14 714 13 HOH HOH . 
E 3 HOH A 15 715 14 HOH HOH . 
E 3 HOH A 16 716 15 HOH HOH . 
E 3 HOH A 17 717 16 HOH HOH . 
E 3 HOH A 18 718 17 HOH HOH . 
E 3 HOH A 19 719 18 HOH HOH . 
E 3 HOH A 20 720 19 HOH HOH . 
E 3 HOH A 21 721 20 HOH HOH . 
E 3 HOH A 22 722 23 HOH HOH . 
E 3 HOH A 23 723 24 HOH HOH . 
E 3 HOH A 24 724 25 HOH HOH . 
E 3 HOH A 25 725 26 HOH HOH . 
E 3 HOH A 26 726 28 HOH HOH . 
E 3 HOH A 27 727 29 HOH HOH . 
E 3 HOH A 28 728 30 HOH HOH . 
E 3 HOH A 29 729 31 HOH HOH . 
E 3 HOH A 30 730 30 HOH HOH . 
F 3 HOH B 1 701 9 HOH HOH . 
F 3 HOH B 2 702 29 HOH HOH . 
F 3 HOH B 3 703 32 HOH HOH . 
F 3 HOH B 4 704 27 HOH HOH . 
F 3 HOH B 5 705 22 HOH HOH . 
F 3 HOH B 6 706 2 HOH HOH . 
F 3 HOH B 7 707 3 HOH HOH . 
F 3 HOH B 8 708 4 HOH HOH . 
F 3 HOH B 9 709 5 HOH HOH . 
F 3 HOH B 10 710 6 HOH HOH . 
F 3 HOH B 11 711 7 HOH HOH . 
F 3 HOH B 12 712 8 HOH HOH . 
F 3 HOH B 13 713 10 HOH HOH . 
F 3 HOH B 14 714 11 HOH HOH . 
F 3 HOH B 15 715 12 HOH HOH . 
F 3 HOH B 16 716 13 HOH HOH . 
F 3 HOH B 17 717 14 HOH HOH . 
F 3 HOH B 18 718 15 HOH HOH . 
F 3 HOH B 19 719 16 HOH HOH . 
F 3 HOH B 20 720 17 HOH HOH . 
F 3 HOH B 21 721 18 HOH HOH . 
F 3 HOH B 22 722 19 HOH HOH . 
F 3 HOH B 23 723 20 HOH HOH . 
F 3 HOH B 24 724 21 HOH HOH . 
F 3 HOH B 25 725 22 HOH HOH . 
F 3 HOH B 26 726 23 HOH HOH . 
F 3 HOH B 27 727 24 HOH HOH . 
F 3 HOH B 28 728 25 HOH HOH . 
F 3 HOH B 29 729 26 HOH HOH . 
F 3 HOH B 30 730 28 HOH HOH . 
F 3 HOH B 31 731 31 HOH HOH . 
F 3 HOH B 32 732 33 HOH HOH . 
F 3 HOH B 33 733 34 HOH HOH . 
F 3 HOH B 34 734 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 4A9 . . . D 2 11.6 -32.321 64.223 1 49.25 ? O2 4A9 601 B 1 
HETATM 2 C C7 4A9 . . . D 2 11.036 -33.274 63.703 1 47.97 ? C7 4A9 601 B 1 
HETATM 3 C C8 4A9 . . . D 2 9.989 -33.073 62.666 1 48.78 ? C8 4A9 601 B 1 
HETATM 4 C C14 4A9 . . . D 2 8.712 -33.639 62.825 1 49.27 ? C14 4A9 601 B 1 
HETATM 5 C C13 4A9 . . . D 2 7.723 -33.394 61.858 1 49.26 ? C13 4A9 601 B 1 
HETATM 6 C C12 4A9 . . . D 2 8.007 -32.584 60.752 1 48.95 ? C12 4A9 601 B 1 
HETATM 7 C C10 4A9 . . . D 2 9.295 -32.032 60.612 1 48.75 ? C10 4A9 601 B 1 
HETATM 8 C C11 4A9 . . . D 2 9.571 -31.119 59.428 1 48.36 ? C11 4A9 601 B 1 
HETATM 9 F F3 4A9 . . . D 2 9.558 -29.823 59.779 1 49.25 ? F3 4A9 601 B 1 
HETATM 10 F F2 4A9 . . . D 2 8.685 -31.201 58.426 1 46.86 ? F2 4A9 601 B 1 
HETATM 11 F F1 4A9 . . . D 2 10.758 -31.319 58.851 1 49.01 ? F1 4A9 601 B 1 
HETATM 12 C C9 4A9 . . . D 2 10.298 -32.282 61.557 1 48.9 ? C9 4A9 601 B 1 
HETATM 13 N N2 4A9 . . . D 2 11.28 -34.628 63.994 1 45.75 ? N2 4A9 601 B 1 
HETATM 14 C C6 4A9 . . . D 2 12.208 -35.183 64.904 1 43.89 ? C6 4A9 601 B 1 
HETATM 15 C C5 4A9 . . . D 2 11.965 -36.416 65.522 1 43.42 ? C5 4A9 601 B 1 
HETATM 16 C C4 4A9 . . . D 2 12.921 -36.956 66.387 1 43.11 ? C4 4A9 601 B 1 
HETATM 17 C C3 4A9 . . . D 2 14.108 -36.296 66.682 1 42.43 ? C3 4A9 601 B 1 
HETATM 18 C C15 4A9 . . . D 2 13.422 -34.5 65.169 1 42.77 ? C15 4A9 601 B 1 
HETATM 19 C C2 4A9 . . . D 2 14.345 -35.064 66.061 1 42.05 ? C2 4A9 601 B 1 
HETATM 20 N N1 4A9 . . . D 2 15.528 -34.345 66.284 1 40.13 ? N1 4A9 601 B 1 
HETATM 21 C C1 4A9 . . . D 2 15.569 -33.063 66.846 1 37.83 ? C1 4A9 601 B 1 
HETATM 22 O O1 4A9 . . . D 2 14.575 -32.456 67.236 1 37.15 ? O1 4A9 601 B 1 
HETATM 23 C C16 4A9 . . . D 2 16.919 -32.517 66.957 1 36.53 ? C16 4A9 601 B 1 
HETATM 24 C C17 4A9 . . . D 2 17.947 -32.7 66.055 1 35.85 ? C17 4A9 601 B 1 
HETATM 25 N N3 4A9 . . . D 2 19.142 -32.065 66.407 1 35.27 ? N3 4A9 601 B 1 
HETATM 26 C C18 4A9 . . . D 2 18.938 -31.411 67.582 1 34.78 ? C18 4A9 601 B 1 
HETATM 27 S S 4A9 . . . D 2 17.36 -31.556 68.254 1 35.86 ? S 4A9 601 B 1 
HETATM 28 N N4 4A9 . . . D 2 20.007 -30.716 68.187 1 33.93 ? N4 4A9 601 B 1 
HETATM 29 C C19 4A9 . . . D 2 19.935 -29.976 69.38 1 34.05 ? C19 4A9 601 B 1 
HETATM 30 C C29 4A9 . . . D 2 21.122 -29.368 69.877 1 34.97 ? C29 4A9 601 B 1 
HETATM 31 C C22 4A9 . . . D 2 20.967 -28.532 71.01 1 37.55 ? C22 4A9 601 B 1 
HETATM 32 N N6 4A9 . . . D 2 19.737 -28.338 71.643 1 36.38 ? N6 4A9 601 B 1 
HETATM 33 C C20 4A9 . . . D 2 18.664 -28.991 71.104 1 34.26 ? C20 4A9 601 B 1 
HETATM 34 C C21 4A9 . . . D 2 17.365 -28.848 71.846 1 33.07 ? C21 4A9 601 B 1 
HETATM 35 N N5 4A9 . . . D 2 18.695 -29.789 69.999 1 33.98 ? N5 4A9 601 B 1 
HETATM 36 N N7 4A9 . . . D 2 22.03 -27.747 71.557 1 41.19 ? N7 4A9 601 B 1 
HETATM 37 C C28 4A9 . . . D 2 22.002 -27.133 72.899 1 42.41 ? C28 4A9 601 B 1 
HETATM 38 C C27 4A9 . . . D 2 23.17 -27.641 73.741 1 44.45 ? C27 4A9 601 B 1 
HETATM 39 N N8 4A9 . . . D 2 24.103 -28.471 72.916 1 46.3 1 N8 4A9 601 B 1 
HETATM 40 C C24 4A9 . . . D 2 24.505 -27.709 71.691 1 45.17 ? C24 4A9 601 B 1 
HETATM 41 C C23 4A9 . . . D 2 23.276 -27.408 70.841 1 43.23 ? C23 4A9 601 B 1 
HETATM 42 C C25 4A9 . . . D 2 25.275 -28.921 73.749 1 48.23 ? C25 4A9 601 B 1 
HETATM 43 C C26 4A9 . . . D 2 26.268 -29.743 72.968 1 50.25 ? C26 4A9 601 B 1 
HETATM 44 O O3 4A9 . . . D 2 27.063 -30.524 73.846 1 51.78 ? O3 4A9 601 B 1 
HETATM 45 H H1 4A9 . . . D 2 23.624 -29.316 72.62 0 46.26 ? H1 4A9 601 B 1 
HETATM 46 H H10 4A9 . . . D 2 8.488 -34.263 63.688 0 49.32 ? H10 4A9 601 B 1 
HETATM 47 H H9 4A9 . . . D 2 6.732 -33.833 61.964 0 49.34 ? H9 4A9 601 B 1 
HETATM 48 H H8 4A9 . . . D 2 7.227 -32.381 60.019 0 49.02 ? H8 4A9 601 B 1 
HETATM 49 H H7 4A9 . . . D 2 11.31 -31.9 61.433 0 48.97 ? H7 4A9 601 B 1 
HETATM 50 H H6 4A9 . . . D 2 10.717 -35.318 63.508 0 45.53 ? H6 4A9 601 B 1 
HETATM 51 H H5 4A9 . . . D 2 11.05 -36.98 65.35 0 43.33 ? H5 4A9 601 B 1 
HETATM 52 H H4 4A9 . . . D 2 12.742 -37.932 66.831 0 43.06 ? H4 4A9 601 B 1 
HETATM 53 H H3 4A9 . . . D 2 14.811 -36.738 67.386 0 42.47 ? H3 4A9 601 B 1 
HETATM 54 H H11 4A9 . . . D 2 13.676 -33.564 64.675 0 42.87 ? H11 4A9 601 B 1 
HETATM 55 H H2 4A9 . . . D 2 16.381 -34.832 66.032 0 40.06 ? H2 4A9 601 B 1 
HETATM 56 H H12 4A9 . . . D 2 17.898 -33.267 65.126 0 35.98 ? H12 4A9 601 B 1 
HETATM 57 H H13 4A9 . . . D 2 20.892 -30.758 67.692 0 33.79 ? H13 4A9 601 B 1 
HETATM 58 H H30 4A9 . . . D 2 22.084 -29.579 69.416 0 34.87 ? H30 4A9 601 B 1 
HETATM 59 H H15 4A9 . . . D 2 16.939 -29.827 72.062 0 33.1 ? H15 4A9 601 B 1 
HETATM 60 H H16 4A9 . . . D 2 16.63 -28.299 71.259 0 33.1 ? H16 4A9 601 B 1 
HETATM 61 H H14 4A9 . . . D 2 17.483 -28.335 72.799 0 33.1 ? H14 4A9 601 B 1 
HETATM 62 H H29 4A9 . . . D 2 21.993 -26.047 72.824 0 42.33 ? H29 4A9 601 B 1 
HETATM 63 H H28 4A9 . . . D 2 21.08 -27.338 73.441 0 42.33 ? H28 4A9 601 B 1 
HETATM 64 H H27 4A9 . . . D 2 22.804 -28.191 74.606 0 44.4 ? H27 4A9 601 B 1 
HETATM 65 H H26 4A9 . . . D 2 23.717 -26.807 74.178 0 44.4 ? H26 4A9 601 B 1 
HETATM 66 H H19 4A9 . . . D 2 24.997 -26.778 71.966 0 45.16 ? H19 4A9 601 B 1 
HETATM 67 H H20 4A9 . . . D 2 25.272 -28.219 71.112 0 45.16 ? H20 4A9 601 B 1 
HETATM 68 H H18 4A9 . . . D 2 23.332 -27.901 69.872 0 43.14 ? H18 4A9 601 B 1 
HETATM 69 H H17 4A9 . . . D 2 23.29 -26.347 70.597 0 43.14 ? H17 4A9 601 B 1 
HETATM 70 H H22 4A9 . . . D 2 24.924 -29.503 74.599 0 48.19 ? H22 4A9 601 B 1 
HETATM 71 H H21 4A9 . . . D 2 25.753 -28.045 74.185 0 48.19 ? H21 4A9 601 B 1 
HETATM 72 H H23 4A9 . . . D 2 26.977 -29.121 72.425 0 50.24 ? H23 4A9 601 B 1 
HETATM 73 H H24 4A9 . . . D 2 25.742 -30.324 72.212 0 50.24 ? H24 4A9 601 B 1 
HETATM 74 H H25 4A9 . . . D 2 27.746 -29.932 74.258 0 51.74 ? H25 4A9 601 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           363 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           74 
#