data_4YBK # _model_server_result.job_id Hev4Pnr4h9aVVg7W7zuT1g _model_server_result.datetime_utc '2024-11-15 02:56:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ybk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4YBK # _exptl.entry_id 4YBK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 531.629 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-({6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl}amino)-N-(4-phenoxyphenyl)-1,3-thiazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YBK _cell.length_a 41.334 _cell.length_b 62.213 _cell.length_c 102.803 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YBK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H29 N7 O3 S' _chem_comp.formula_weight 531.629 _chem_comp.id 4B7 _chem_comp.mon_nstd_flag . _chem_comp.name 2-({6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl}amino)-N-(4-phenoxyphenyl)-1,3-thiazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C13 4B7 doub 1 n y C12 C5 4B7 sing 2 n y C13 C2 4B7 sing 3 n y O2 C6 4B7 sing 4 n n O2 C5 4B7 sing 5 n n C7 C6 4B7 doub 6 n y C7 C8 4B7 sing 7 n y C6 C11 4B7 sing 8 n y C5 C4 4B7 doub 9 n y C8 C9 4B7 doub 10 n y C11 C10 4B7 doub 11 n y C9 C10 4B7 sing 12 n y C2 N1 4B7 sing 13 n n C2 C3 4B7 doub 14 n y N1 C1 4B7 sing 15 n n C4 C3 4B7 sing 16 n y C15 C14 4B7 doub 17 n y C15 N2 4B7 sing 18 n y C1 C14 4B7 sing 19 n n C1 O1 4B7 doub 20 n n C14 S 4B7 sing 21 n y N2 C16 4B7 doub 22 n y C16 S 4B7 sing 23 n y C16 N3 4B7 sing 24 n n N3 C17 4B7 sing 25 n n C17 C27 4B7 doub 26 n y C17 N4 4B7 sing 27 n y C27 C20 4B7 sing 28 n y N4 C18 4B7 doub 29 n y C18 N5 4B7 sing 30 n y C18 C19 4B7 sing 31 n n C20 N5 4B7 doub 32 n y C20 N6 4B7 sing 33 n n C21 N6 4B7 sing 34 n n C21 C22 4B7 sing 35 n n N6 C26 4B7 sing 36 n n C26 C25 4B7 sing 37 n n C22 N7 4B7 sing 38 n n C25 N7 4B7 sing 39 n n N7 C23 4B7 sing 40 n n C23 C24 4B7 sing 41 n n O3 C24 4B7 sing 42 n n N1 H2 4B7 sing 43 n n C13 H11 4B7 sing 44 n n C12 H10 4B7 sing 45 n n C11 H9 4B7 sing 46 n n C10 H8 4B7 sing 47 n n C9 H7 4B7 sing 48 n n C8 H6 4B7 sing 49 n n C7 H5 4B7 sing 50 n n C4 H4 4B7 sing 51 n n C3 H3 4B7 sing 52 n n C15 H12 4B7 sing 53 n n N3 H13 4B7 sing 54 n n C27 H30 4B7 sing 55 n n C19 H14 4B7 sing 56 n n C19 H15 4B7 sing 57 n n C19 H16 4B7 sing 58 n n C26 H28 4B7 sing 59 n n C26 H29 4B7 sing 60 n n C25 H27 4B7 sing 61 n n C25 H26 4B7 sing 62 n n C22 H19 4B7 sing 63 n n C22 H20 4B7 sing 64 n n C21 H17 4B7 sing 65 n n C21 H18 4B7 sing 66 n n C23 H22 4B7 sing 67 n n C23 H21 4B7 sing 68 n n C24 H23 4B7 sing 69 n n C24 H24 4B7 sing 70 n n O3 H25 4B7 sing 71 n n # _atom_sites.entry_id 4YBK _atom_sites.fract_transf_matrix[1][1] 0.024193 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4B7 A 1 601 1 4B7 UNL . C 3 HOH A 1 701 7 HOH HOH . C 3 HOH A 2 702 38 HOH HOH . C 3 HOH A 3 703 22 HOH HOH . C 3 HOH A 4 704 16 HOH HOH . C 3 HOH A 5 705 9 HOH HOH . C 3 HOH A 6 706 39 HOH HOH . C 3 HOH A 7 707 11 HOH HOH . C 3 HOH A 8 708 21 HOH HOH . C 3 HOH A 9 709 15 HOH HOH . C 3 HOH A 10 710 13 HOH HOH . C 3 HOH A 11 711 50 HOH HOH . C 3 HOH A 12 712 8 HOH HOH . C 3 HOH A 13 713 12 HOH HOH . C 3 HOH A 14 714 36 HOH HOH . C 3 HOH A 15 715 29 HOH HOH . C 3 HOH A 16 716 27 HOH HOH . C 3 HOH A 17 717 30 HOH HOH . C 3 HOH A 18 718 42 HOH HOH . C 3 HOH A 19 719 46 HOH HOH . C 3 HOH A 20 720 2 HOH HOH . C 3 HOH A 21 721 3 HOH HOH . C 3 HOH A 22 722 4 HOH HOH . C 3 HOH A 23 723 5 HOH HOH . C 3 HOH A 24 724 6 HOH HOH . C 3 HOH A 25 725 10 HOH HOH . C 3 HOH A 26 726 14 HOH HOH . C 3 HOH A 27 727 17 HOH HOH . C 3 HOH A 28 728 18 HOH HOH . C 3 HOH A 29 729 19 HOH HOH . C 3 HOH A 30 730 20 HOH HOH . C 3 HOH A 31 731 23 HOH HOH . C 3 HOH A 32 732 24 HOH HOH . C 3 HOH A 33 733 25 HOH HOH . C 3 HOH A 34 734 26 HOH HOH . C 3 HOH A 35 735 28 HOH HOH . C 3 HOH A 36 736 31 HOH HOH . C 3 HOH A 37 737 32 HOH HOH . C 3 HOH A 38 738 33 HOH HOH . C 3 HOH A 39 739 34 HOH HOH . C 3 HOH A 40 740 35 HOH HOH . C 3 HOH A 41 741 37 HOH HOH . C 3 HOH A 42 742 40 HOH HOH . C 3 HOH A 43 743 41 HOH HOH . C 3 HOH A 44 744 43 HOH HOH . C 3 HOH A 45 745 44 HOH HOH . C 3 HOH A 46 746 45 HOH HOH . C 3 HOH A 47 747 47 HOH HOH . C 3 HOH A 48 748 48 HOH HOH . C 3 HOH A 49 749 49 HOH HOH . C 3 HOH A 50 750 51 HOH HOH . C 3 HOH A 51 751 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 4B7 . . . B 2 62.25 60.777 109.941 1 35.91 ? O1 4B7 601 A 1 HETATM 2 C C1 4B7 . . . B 2 62.914 61.292 109.062 1 32.71 ? C1 4B7 601 A 1 HETATM 3 N N1 4B7 . . . B 2 62.41 61.815 107.883 1 34.92 ? N1 4B7 601 A 1 HETATM 4 C C2 4B7 . . . B 2 61.052 62.027 107.546 1 37.58 ? C2 4B7 601 A 1 HETATM 5 C C13 4B7 . . . B 2 60.779 62.267 106.177 1 38.81 ? C13 4B7 601 A 1 HETATM 6 C C12 4B7 . . . B 2 59.499 62.558 105.758 1 38.94 ? C12 4B7 601 A 1 HETATM 7 C C5 4B7 . . . B 2 58.465 62.577 106.715 1 38.77 ? C5 4B7 601 A 1 HETATM 8 O O2 4B7 . . . B 2 57.236 62.971 106.309 1 38.96 ? O2 4B7 601 A 1 HETATM 9 C C6 4B7 . . . B 2 56.729 64.224 106.654 1 38.27 ? C6 4B7 601 A 1 HETATM 10 C C11 4B7 . . . B 2 57.588 65.3 107.071 1 37.55 ? C11 4B7 601 A 1 HETATM 11 C C10 4B7 . . . B 2 57.004 66.533 107.375 1 37.18 ? C10 4B7 601 A 1 HETATM 12 C C9 4B7 . . . B 2 55.621 66.718 107.262 1 38.49 ? C9 4B7 601 A 1 HETATM 13 C C8 4B7 . . . B 2 54.802 65.66 106.84 1 39.14 ? C8 4B7 601 A 1 HETATM 14 C C7 4B7 . . . B 2 55.352 64.413 106.539 1 39.3 ? C7 4B7 601 A 1 HETATM 15 C C4 4B7 . . . B 2 58.704 62.277 108.023 1 39.78 ? C4 4B7 601 A 1 HETATM 16 C C3 4B7 . . . B 2 59.979 62.002 108.461 1 39 ? C3 4B7 601 A 1 HETATM 17 C C14 4B7 . . . B 2 64.347 61.248 109.207 1 29.59 ? C14 4B7 601 A 1 HETATM 18 C C15 4B7 . . . B 2 65.261 62.21 108.876 1 29.24 ? C15 4B7 601 A 1 HETATM 19 N N2 4B7 . . . B 2 66.551 61.923 109.283 1 29.12 ? N2 4B7 601 A 1 HETATM 20 C C16 4B7 . . . B 2 66.535 60.727 109.916 1 29.38 ? C16 4B7 601 A 1 HETATM 21 S S 4B7 . . . B 2 65.022 59.974 110.001 1 29.49 ? S 4B7 601 A 1 HETATM 22 N N3 4B7 . . . B 2 67.731 60.181 110.408 1 31.86 ? N3 4B7 601 A 1 HETATM 23 C C17 4B7 . . . B 2 67.866 58.981 111.128 1 32.35 ? C17 4B7 601 A 1 HETATM 24 C C27 4B7 . . . B 2 69.18 58.575 111.531 1 34.62 ? C27 4B7 601 A 1 HETATM 25 C C20 4B7 . . . B 2 69.272 57.426 112.377 1 36.1 ? C20 4B7 601 A 1 HETATM 26 N N5 4B7 . . . B 2 68.131 56.733 112.813 1 32.9 ? N5 4B7 601 A 1 HETATM 27 C C18 4B7 . . . B 2 66.911 57.218 112.359 1 30.01 ? C18 4B7 601 A 1 HETATM 28 C C19 4B7 . . . B 2 65.66 56.564 112.877 1 28.15 ? C19 4B7 601 A 1 HETATM 29 N N4 4B7 . . . B 2 66.727 58.284 111.533 1 29.73 ? N4 4B7 601 A 1 HETATM 30 N N6 4B7 . . . B 2 70.535 56.88 112.82 1 39.96 ? N6 4B7 601 A 1 HETATM 31 C C26 4B7 . . . B 2 70.728 55.51 113.36 1 41.76 ? C26 4B7 601 A 1 HETATM 32 C C25 4B7 . . . B 2 71.143 55.674 114.816 1 43.39 ? C25 4B7 601 A 1 HETATM 33 N N7 4B7 . . . B 2 72.442 56.417 114.872 1 45.23 1 N7 4B7 601 A 1 HETATM 34 C C22 4B7 . . . B 2 72.287 57.768 114.25 1 44.65 ? C22 4B7 601 A 1 HETATM 35 C C21 4B7 . . . B 2 71.828 57.597 112.806 1 42.72 ? C21 4B7 601 A 1 HETATM 36 C C23 4B7 . . . B 2 73.083 56.439 116.238 0 45.6 ? C23 4B7 601 A 1 HETATM 37 C C24 4B7 . . . B 2 72.299 57.214 117.279 0 44.97 ? C24 4B7 601 A 1 HETATM 38 O O3 4B7 . . . B 2 72.633 58.591 117.232 0 44.89 ? O3 4B7 601 A 1 HETATM 39 H H1 4B7 . . . B 2 73.095 55.915 114.279 0 45.91 ? H1 4B7 601 A 1 HETATM 40 H H2 4B7 . . . B 2 63.08 62.107 107.181 0 35.38 ? H2 4B7 601 A 1 HETATM 41 H H11 4B7 . . . B 2 61.556 62.196 105.417 0 39.37 ? H11 4B7 601 A 1 HETATM 42 H H10 4B7 . . . B 2 59.328 62.807 104.713 0 39.57 ? H10 4B7 601 A 1 HETATM 43 H H9 4B7 . . . B 2 58.671 65.193 107.125 0 37.75 ? H9 4B7 601 A 1 HETATM 44 H H8 4B7 . . . B 2 57.632 67.357 107.711 0 37.21 ? H8 4B7 601 A 1 HETATM 45 H H7 4B7 . . . B 2 55.181 67.681 107.518 0 38.55 ? H7 4B7 601 A 1 HETATM 46 H H6 4B7 . . . B 2 53.728 65.812 106.741 0 39.47 ? H6 4B7 601 A 1 HETATM 47 H H5 4B7 . . . B 2 54.723 63.597 106.188 0 39.76 ? H5 4B7 601 A 1 HETATM 48 H H4 4B7 . . . B 2 57.876 62.199 108.723 0 39.71 ? H4 4B7 601 A 1 HETATM 49 H H3 4B7 . . . B 2 60.068 61.757 109.518 0 38.8 ? H3 4B7 601 A 1 HETATM 50 H H12 4B7 . . . B 2 65.068 63.14 108.344 0 29.6 ? H12 4B7 601 A 1 HETATM 51 H H13 4B7 . . . B 2 68.568 60.716 110.203 0 32.36 ? H13 4B7 601 A 1 HETATM 52 H H30 4B7 . . . B 2 70.042 59.148 111.194 0 35.09 ? H30 4B7 601 A 1 HETATM 53 H H14 4B7 . . . B 2 64.894 56.437 112.114 0 28.22 ? H14 4B7 601 A 1 HETATM 54 H H15 4B7 . . . B 2 65.863 55.584 113.306 0 28.42 ? H15 4B7 601 A 1 HETATM 55 H H16 4B7 . . . B 2 65.232 57.175 113.671 0 27.68 ? H16 4B7 601 A 1 HETATM 56 H H28 4B7 . . . B 2 71.463 54.961 112.773 0 42.51 ? H28 4B7 601 A 1 HETATM 57 H H29 4B7 . . . B 2 69.842 54.88 113.318 0 41.56 ? H29 4B7 601 A 1 HETATM 58 H H27 4B7 . . . B 2 71.199 54.707 115.314 0 43.64 ? H27 4B7 601 A 1 HETATM 59 H H26 4B7 . . . B 2 70.372 56.218 115.359 0 42.76 ? H26 4B7 601 A 1 HETATM 60 H H19 4B7 . . . B 2 73.211 58.34 114.327 0 45.05 ? H19 4B7 601 A 1 HETATM 61 H H20 4B7 . . . B 2 71.568 58.377 114.796 0 44.04 ? H20 4B7 601 A 1 HETATM 62 H H17 4B7 . . . B 2 72.586 57.043 112.254 0 43.49 ? H17 4B7 601 A 1 HETATM 63 H H18 4B7 . . . B 2 71.792 58.544 112.274 0 42.64 ? H18 4B7 601 A 1 HETATM 64 H H22 4B7 . . . B 2 74.079 56.866 116.135 0 46.1 ? H22 4B7 601 A 1 HETATM 65 H H21 4B7 . . . B 2 73.256 55.42 116.578 0 45.99 ? H21 4B7 601 A 1 HETATM 66 H H23 4B7 . . . B 2 71.231 57.017 117.212 0 44.55 ? H23 4B7 601 A 1 HETATM 67 H H24 4B7 . . . B 2 72.569 56.915 118.291 0 45.07 ? H24 4B7 601 A 1 HETATM 68 H H25 4B7 . . . B 2 72.106 59.063 117.928 0 44.44 ? H25 4B7 601 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 68 #