data_4YBS
#
_model_server_result.job_id            iH4LUYblnj1CQT-OpYqx2w 
_model_server_result.datetime_utc      '2024-11-04 20:09:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ybs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1101}' 
#
_entry.id    4YBS 
#
_exptl.entry_id    4YBS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.56 
_cell.angle_gamma         90 
_cell.entry_id            4YBS 
_cell.length_a            90.735 
_cell.length_b            36.238 
_cell.length_c            65.935 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YBS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 7 A CYS 829 1_555 B ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc2 A SG CYS 10 A CYS 832 1_555 B ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc3 A SG CYS 19 A CYS 841 1_555 C ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc4 A SG CYS 22 A CYS 844 1_555 C ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc5 A ND1 HIS 27 A HIS 849 1_555 B ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc6 A SG CYS 30 A CYS 852 1_555 B ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc7 A SG CYS 45 A CYS 867 1_555 C ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc8 A SG CYS 48 A CYS 870 1_555 C ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4YBS 
_atom_sites.fract_transf_matrix[1][1]    0.011021 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004355 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027595 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016307 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1101 1 ZN ZN . 
C 2 ZN A 1 1102 2 ZN ZN . 
D 3 4BK A 1 1103 201 4BK 558 . 
E 4 DMS A 1 1104 202 DMS DMS . 
F 5 HOH A 1 1201 107 HOH HOH . 
F 5 HOH A 2 1202 14 HOH HOH . 
F 5 HOH A 3 1203 66 HOH HOH . 
F 5 HOH A 4 1204 100 HOH HOH . 
F 5 HOH A 5 1205 186 HOH HOH . 
F 5 HOH A 6 1206 3 HOH HOH . 
F 5 HOH A 7 1207 63 HOH HOH . 
F 5 HOH A 8 1208 177 HOH HOH . 
F 5 HOH A 9 1209 165 HOH HOH . 
F 5 HOH A 10 1210 120 HOH HOH . 
F 5 HOH A 11 1211 74 HOH HOH . 
F 5 HOH A 12 1212 46 HOH HOH . 
F 5 HOH A 13 1213 15 HOH HOH . 
F 5 HOH A 14 1214 30 HOH HOH . 
F 5 HOH A 15 1215 142 HOH HOH . 
F 5 HOH A 16 1216 41 HOH HOH . 
F 5 HOH A 17 1217 105 HOH HOH . 
F 5 HOH A 18 1218 40 HOH HOH . 
F 5 HOH A 19 1219 73 HOH HOH . 
F 5 HOH A 20 1220 98 HOH HOH . 
F 5 HOH A 21 1221 104 HOH HOH . 
F 5 HOH A 22 1222 59 HOH HOH . 
F 5 HOH A 23 1223 181 HOH HOH . 
F 5 HOH A 24 1224 52 HOH HOH . 
F 5 HOH A 25 1225 5 HOH HOH . 
F 5 HOH A 26 1226 80 HOH HOH . 
F 5 HOH A 27 1227 60 HOH HOH . 
F 5 HOH A 28 1228 124 HOH HOH . 
F 5 HOH A 29 1229 18 HOH HOH . 
F 5 HOH A 30 1230 32 HOH HOH . 
F 5 HOH A 31 1231 123 HOH HOH . 
F 5 HOH A 32 1232 108 HOH HOH . 
F 5 HOH A 33 1233 45 HOH HOH . 
F 5 HOH A 34 1234 174 HOH HOH . 
F 5 HOH A 35 1235 166 HOH HOH . 
F 5 HOH A 36 1236 180 HOH HOH . 
F 5 HOH A 37 1237 126 HOH HOH . 
F 5 HOH A 38 1238 135 HOH HOH . 
F 5 HOH A 39 1239 139 HOH HOH . 
F 5 HOH A 40 1240 78 HOH HOH . 
F 5 HOH A 41 1241 93 HOH HOH . 
F 5 HOH A 42 1242 77 HOH HOH . 
F 5 HOH A 43 1243 183 HOH HOH . 
F 5 HOH A 44 1244 131 HOH HOH . 
F 5 HOH A 45 1245 191 HOH HOH . 
F 5 HOH A 46 1246 99 HOH HOH . 
F 5 HOH A 47 1247 72 HOH HOH . 
F 5 HOH A 48 1248 109 HOH HOH . 
F 5 HOH A 49 1249 164 HOH HOH . 
F 5 HOH A 50 1250 161 HOH HOH . 
F 5 HOH A 51 1251 193 HOH HOH . 
F 5 HOH A 52 1252 167 HOH HOH . 
F 5 HOH A 53 1253 51 HOH HOH . 
F 5 HOH A 54 1254 75 HOH HOH . 
F 5 HOH A 55 1255 1 HOH HOH . 
F 5 HOH A 56 1256 2 HOH HOH . 
F 5 HOH A 57 1257 4 HOH HOH . 
F 5 HOH A 58 1258 6 HOH HOH . 
F 5 HOH A 59 1259 7 HOH HOH . 
F 5 HOH A 60 1260 8 HOH HOH . 
F 5 HOH A 61 1261 9 HOH HOH . 
F 5 HOH A 62 1262 10 HOH HOH . 
F 5 HOH A 63 1263 11 HOH HOH . 
F 5 HOH A 64 1264 12 HOH HOH . 
F 5 HOH A 65 1265 13 HOH HOH . 
F 5 HOH A 66 1266 16 HOH HOH . 
F 5 HOH A 67 1267 17 HOH HOH . 
F 5 HOH A 68 1268 19 HOH HOH . 
F 5 HOH A 69 1269 20 HOH HOH . 
F 5 HOH A 70 1270 21 HOH HOH . 
F 5 HOH A 71 1271 23 HOH HOH . 
F 5 HOH A 72 1272 24 HOH HOH . 
F 5 HOH A 73 1273 25 HOH HOH . 
F 5 HOH A 74 1274 26 HOH HOH . 
F 5 HOH A 75 1275 27 HOH HOH . 
F 5 HOH A 76 1276 28 HOH HOH . 
F 5 HOH A 77 1277 29 HOH HOH . 
F 5 HOH A 78 1278 33 HOH HOH . 
F 5 HOH A 79 1279 35 HOH HOH . 
F 5 HOH A 80 1280 36 HOH HOH . 
F 5 HOH A 81 1281 37 HOH HOH . 
F 5 HOH A 82 1282 39 HOH HOH . 
F 5 HOH A 83 1283 42 HOH HOH . 
F 5 HOH A 84 1284 43 HOH HOH . 
F 5 HOH A 85 1285 44 HOH HOH . 
F 5 HOH A 86 1286 47 HOH HOH . 
F 5 HOH A 87 1287 48 HOH HOH . 
F 5 HOH A 88 1288 49 HOH HOH . 
F 5 HOH A 89 1289 50 HOH HOH . 
F 5 HOH A 90 1290 55 HOH HOH . 
F 5 HOH A 91 1291 56 HOH HOH . 
F 5 HOH A 92 1292 57 HOH HOH . 
F 5 HOH A 93 1293 58 HOH HOH . 
F 5 HOH A 94 1294 64 HOH HOH . 
F 5 HOH A 95 1295 65 HOH HOH . 
F 5 HOH A 96 1296 67 HOH HOH . 
F 5 HOH A 97 1297 68 HOH HOH . 
F 5 HOH A 98 1298 69 HOH HOH . 
F 5 HOH A 99 1299 70 HOH HOH . 
F 5 HOH A 100 1300 76 HOH HOH . 
F 5 HOH A 101 1301 79 HOH HOH . 
F 5 HOH A 102 1302 81 HOH HOH . 
F 5 HOH A 103 1303 82 HOH HOH . 
F 5 HOH A 104 1304 83 HOH HOH . 
F 5 HOH A 105 1305 86 HOH HOH . 
F 5 HOH A 106 1306 89 HOH HOH . 
F 5 HOH A 107 1307 90 HOH HOH . 
F 5 HOH A 108 1308 91 HOH HOH . 
F 5 HOH A 109 1309 92 HOH HOH . 
F 5 HOH A 110 1310 94 HOH HOH . 
F 5 HOH A 111 1311 96 HOH HOH . 
F 5 HOH A 112 1312 101 HOH HOH . 
F 5 HOH A 113 1313 102 HOH HOH . 
F 5 HOH A 114 1314 103 HOH HOH . 
F 5 HOH A 115 1315 106 HOH HOH . 
F 5 HOH A 116 1316 110 HOH HOH . 
F 5 HOH A 117 1317 112 HOH HOH . 
F 5 HOH A 118 1318 114 HOH HOH . 
F 5 HOH A 119 1319 116 HOH HOH . 
F 5 HOH A 120 1320 117 HOH HOH . 
F 5 HOH A 121 1321 119 HOH HOH . 
F 5 HOH A 122 1322 122 HOH HOH . 
F 5 HOH A 123 1323 125 HOH HOH . 
F 5 HOH A 124 1324 127 HOH HOH . 
F 5 HOH A 125 1325 134 HOH HOH . 
F 5 HOH A 126 1326 136 HOH HOH . 
F 5 HOH A 127 1327 140 HOH HOH . 
F 5 HOH A 128 1328 141 HOH HOH . 
F 5 HOH A 129 1329 143 HOH HOH . 
F 5 HOH A 130 1330 146 HOH HOH . 
F 5 HOH A 131 1331 150 HOH HOH . 
F 5 HOH A 132 1332 157 HOH HOH . 
F 5 HOH A 133 1333 168 HOH HOH . 
F 5 HOH A 134 1334 169 HOH HOH . 
F 5 HOH A 135 1335 171 HOH HOH . 
F 5 HOH A 136 1336 173 HOH HOH . 
F 5 HOH A 137 1337 175 HOH HOH . 
F 5 HOH A 138 1338 176 HOH HOH . 
F 5 HOH A 139 1339 182 HOH HOH . 
F 5 HOH A 140 1340 184 HOH HOH . 
F 5 HOH A 141 1341 185 HOH HOH . 
F 5 HOH A 142 1342 187 HOH HOH . 
F 5 HOH A 143 1343 188 HOH HOH . 
F 5 HOH A 144 1344 189 HOH HOH . 
F 5 HOH A 145 1345 190 HOH HOH . 
F 5 HOH A 146 1346 192 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               24.796 
_atom_site.Cartn_y               5.147 
_atom_site.Cartn_z               25.032 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        33.34 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           1101 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#