data_4YBS # _model_server_result.job_id jQEyv1ZQRDKzTki4Lgz9Xw _model_server_result.datetime_utc '2024-11-22 23:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ybs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 4YBS # _exptl.entry_id 4YBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.56 _cell.angle_gamma 90 _cell.entry_id 4YBS _cell.length_a 90.735 _cell.length_b 36.238 _cell.length_c 65.935 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 7 A CYS 829 1_555 B ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 A SG CYS 10 A CYS 832 1_555 B ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc3 A SG CYS 19 A CYS 841 1_555 C ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc4 A SG CYS 22 A CYS 844 1_555 C ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc5 A ND1 HIS 27 A HIS 849 1_555 B ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc6 A SG CYS 30 A CYS 852 1_555 B ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc7 A SG CYS 45 A CYS 867 1_555 C ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc8 A SG CYS 48 A CYS 870 1_555 C ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YBS _atom_sites.fract_transf_matrix[1][1] 0.011021 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004355 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1101 1 ZN ZN . C 2 ZN A 1 1102 2 ZN ZN . D 3 4BK A 1 1103 201 4BK 558 . E 4 DMS A 1 1104 202 DMS DMS . F 5 HOH A 1 1201 107 HOH HOH . F 5 HOH A 2 1202 14 HOH HOH . F 5 HOH A 3 1203 66 HOH HOH . F 5 HOH A 4 1204 100 HOH HOH . F 5 HOH A 5 1205 186 HOH HOH . F 5 HOH A 6 1206 3 HOH HOH . F 5 HOH A 7 1207 63 HOH HOH . F 5 HOH A 8 1208 177 HOH HOH . F 5 HOH A 9 1209 165 HOH HOH . F 5 HOH A 10 1210 120 HOH HOH . F 5 HOH A 11 1211 74 HOH HOH . F 5 HOH A 12 1212 46 HOH HOH . F 5 HOH A 13 1213 15 HOH HOH . F 5 HOH A 14 1214 30 HOH HOH . F 5 HOH A 15 1215 142 HOH HOH . F 5 HOH A 16 1216 41 HOH HOH . F 5 HOH A 17 1217 105 HOH HOH . F 5 HOH A 18 1218 40 HOH HOH . F 5 HOH A 19 1219 73 HOH HOH . F 5 HOH A 20 1220 98 HOH HOH . F 5 HOH A 21 1221 104 HOH HOH . F 5 HOH A 22 1222 59 HOH HOH . F 5 HOH A 23 1223 181 HOH HOH . F 5 HOH A 24 1224 52 HOH HOH . F 5 HOH A 25 1225 5 HOH HOH . F 5 HOH A 26 1226 80 HOH HOH . F 5 HOH A 27 1227 60 HOH HOH . F 5 HOH A 28 1228 124 HOH HOH . F 5 HOH A 29 1229 18 HOH HOH . F 5 HOH A 30 1230 32 HOH HOH . F 5 HOH A 31 1231 123 HOH HOH . F 5 HOH A 32 1232 108 HOH HOH . F 5 HOH A 33 1233 45 HOH HOH . F 5 HOH A 34 1234 174 HOH HOH . F 5 HOH A 35 1235 166 HOH HOH . F 5 HOH A 36 1236 180 HOH HOH . F 5 HOH A 37 1237 126 HOH HOH . F 5 HOH A 38 1238 135 HOH HOH . F 5 HOH A 39 1239 139 HOH HOH . F 5 HOH A 40 1240 78 HOH HOH . F 5 HOH A 41 1241 93 HOH HOH . F 5 HOH A 42 1242 77 HOH HOH . F 5 HOH A 43 1243 183 HOH HOH . F 5 HOH A 44 1244 131 HOH HOH . F 5 HOH A 45 1245 191 HOH HOH . F 5 HOH A 46 1246 99 HOH HOH . F 5 HOH A 47 1247 72 HOH HOH . F 5 HOH A 48 1248 109 HOH HOH . F 5 HOH A 49 1249 164 HOH HOH . F 5 HOH A 50 1250 161 HOH HOH . F 5 HOH A 51 1251 193 HOH HOH . F 5 HOH A 52 1252 167 HOH HOH . F 5 HOH A 53 1253 51 HOH HOH . F 5 HOH A 54 1254 75 HOH HOH . F 5 HOH A 55 1255 1 HOH HOH . F 5 HOH A 56 1256 2 HOH HOH . F 5 HOH A 57 1257 4 HOH HOH . F 5 HOH A 58 1258 6 HOH HOH . F 5 HOH A 59 1259 7 HOH HOH . F 5 HOH A 60 1260 8 HOH HOH . F 5 HOH A 61 1261 9 HOH HOH . F 5 HOH A 62 1262 10 HOH HOH . F 5 HOH A 63 1263 11 HOH HOH . F 5 HOH A 64 1264 12 HOH HOH . F 5 HOH A 65 1265 13 HOH HOH . F 5 HOH A 66 1266 16 HOH HOH . F 5 HOH A 67 1267 17 HOH HOH . F 5 HOH A 68 1268 19 HOH HOH . F 5 HOH A 69 1269 20 HOH HOH . F 5 HOH A 70 1270 21 HOH HOH . F 5 HOH A 71 1271 23 HOH HOH . F 5 HOH A 72 1272 24 HOH HOH . F 5 HOH A 73 1273 25 HOH HOH . F 5 HOH A 74 1274 26 HOH HOH . F 5 HOH A 75 1275 27 HOH HOH . F 5 HOH A 76 1276 28 HOH HOH . F 5 HOH A 77 1277 29 HOH HOH . F 5 HOH A 78 1278 33 HOH HOH . F 5 HOH A 79 1279 35 HOH HOH . F 5 HOH A 80 1280 36 HOH HOH . F 5 HOH A 81 1281 37 HOH HOH . F 5 HOH A 82 1282 39 HOH HOH . F 5 HOH A 83 1283 42 HOH HOH . F 5 HOH A 84 1284 43 HOH HOH . F 5 HOH A 85 1285 44 HOH HOH . F 5 HOH A 86 1286 47 HOH HOH . F 5 HOH A 87 1287 48 HOH HOH . F 5 HOH A 88 1288 49 HOH HOH . F 5 HOH A 89 1289 50 HOH HOH . F 5 HOH A 90 1290 55 HOH HOH . F 5 HOH A 91 1291 56 HOH HOH . F 5 HOH A 92 1292 57 HOH HOH . F 5 HOH A 93 1293 58 HOH HOH . F 5 HOH A 94 1294 64 HOH HOH . F 5 HOH A 95 1295 65 HOH HOH . F 5 HOH A 96 1296 67 HOH HOH . F 5 HOH A 97 1297 68 HOH HOH . F 5 HOH A 98 1298 69 HOH HOH . F 5 HOH A 99 1299 70 HOH HOH . F 5 HOH A 100 1300 76 HOH HOH . F 5 HOH A 101 1301 79 HOH HOH . F 5 HOH A 102 1302 81 HOH HOH . F 5 HOH A 103 1303 82 HOH HOH . F 5 HOH A 104 1304 83 HOH HOH . F 5 HOH A 105 1305 86 HOH HOH . F 5 HOH A 106 1306 89 HOH HOH . F 5 HOH A 107 1307 90 HOH HOH . F 5 HOH A 108 1308 91 HOH HOH . F 5 HOH A 109 1309 92 HOH HOH . F 5 HOH A 110 1310 94 HOH HOH . F 5 HOH A 111 1311 96 HOH HOH . F 5 HOH A 112 1312 101 HOH HOH . F 5 HOH A 113 1313 102 HOH HOH . F 5 HOH A 114 1314 103 HOH HOH . F 5 HOH A 115 1315 106 HOH HOH . F 5 HOH A 116 1316 110 HOH HOH . F 5 HOH A 117 1317 112 HOH HOH . F 5 HOH A 118 1318 114 HOH HOH . F 5 HOH A 119 1319 116 HOH HOH . F 5 HOH A 120 1320 117 HOH HOH . F 5 HOH A 121 1321 119 HOH HOH . F 5 HOH A 122 1322 122 HOH HOH . F 5 HOH A 123 1323 125 HOH HOH . F 5 HOH A 124 1324 127 HOH HOH . F 5 HOH A 125 1325 134 HOH HOH . F 5 HOH A 126 1326 136 HOH HOH . F 5 HOH A 127 1327 140 HOH HOH . F 5 HOH A 128 1328 141 HOH HOH . F 5 HOH A 129 1329 143 HOH HOH . F 5 HOH A 130 1330 146 HOH HOH . F 5 HOH A 131 1331 150 HOH HOH . F 5 HOH A 132 1332 157 HOH HOH . F 5 HOH A 133 1333 168 HOH HOH . F 5 HOH A 134 1334 169 HOH HOH . F 5 HOH A 135 1335 171 HOH HOH . F 5 HOH A 136 1336 173 HOH HOH . F 5 HOH A 137 1337 175 HOH HOH . F 5 HOH A 138 1338 176 HOH HOH . F 5 HOH A 139 1339 182 HOH HOH . F 5 HOH A 140 1340 184 HOH HOH . F 5 HOH A 141 1341 185 HOH HOH . F 5 HOH A 142 1342 187 HOH HOH . F 5 HOH A 143 1343 188 HOH HOH . F 5 HOH A 144 1344 189 HOH HOH . F 5 HOH A 145 1345 190 HOH HOH . F 5 HOH A 146 1346 192 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.796 _atom_site.Cartn_y 5.147 _atom_site.Cartn_z 25.032 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #