data_4YC3 # _model_server_result.job_id u8YsV2AQWDUXSfABCmI-1w _model_server_result.datetime_utc '2024-11-23 07:52:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4YC3 # _exptl.entry_id 4YC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YC3 _cell.length_a 69.2 _cell.length_b 70.15 _cell.length_c 156.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 4YC3 _atom_sites.fract_transf_matrix[1][1] 0.014451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MPD A 1 301 2 MPD MPD . E 4 MPD B 1 501 1 MPD MPD . F 5 HOH A 1 401 1 HOH HOH . F 5 HOH A 2 402 30 HOH HOH . F 5 HOH A 3 403 42 HOH HOH . F 5 HOH A 4 404 149 HOH HOH . F 5 HOH A 5 405 111 HOH HOH . F 5 HOH A 6 406 197 HOH HOH . F 5 HOH A 7 407 98 HOH HOH . F 5 HOH A 8 408 162 HOH HOH . F 5 HOH A 9 409 198 HOH HOH . F 5 HOH A 10 410 102 HOH HOH . F 5 HOH A 11 411 129 HOH HOH . F 5 HOH A 12 412 53 HOH HOH . F 5 HOH A 13 413 165 HOH HOH . F 5 HOH A 14 414 154 HOH HOH . F 5 HOH A 15 415 115 HOH HOH . F 5 HOH A 16 416 177 HOH HOH . F 5 HOH A 17 417 179 HOH HOH . F 5 HOH A 18 418 44 HOH HOH . F 5 HOH A 19 419 196 HOH HOH . F 5 HOH A 20 420 66 HOH HOH . F 5 HOH A 21 421 101 HOH HOH . F 5 HOH A 22 422 75 HOH HOH . F 5 HOH A 23 423 19 HOH HOH . F 5 HOH A 24 424 140 HOH HOH . F 5 HOH A 25 425 166 HOH HOH . F 5 HOH A 26 426 65 HOH HOH . F 5 HOH A 27 427 51 HOH HOH . F 5 HOH A 28 428 32 HOH HOH . F 5 HOH A 29 429 188 HOH HOH . F 5 HOH A 30 430 194 HOH HOH . F 5 HOH A 31 431 47 HOH HOH . F 5 HOH A 32 432 12 HOH HOH . F 5 HOH A 33 433 77 HOH HOH . F 5 HOH A 34 434 29 HOH HOH . F 5 HOH A 35 435 37 HOH HOH . F 5 HOH A 36 436 134 HOH HOH . F 5 HOH A 37 437 81 HOH HOH . F 5 HOH A 38 438 195 HOH HOH . F 5 HOH A 39 439 87 HOH HOH . F 5 HOH A 40 440 123 HOH HOH . F 5 HOH A 41 441 28 HOH HOH . F 5 HOH A 42 442 138 HOH HOH . F 5 HOH A 43 443 174 HOH HOH . F 5 HOH A 44 444 187 HOH HOH . F 5 HOH A 45 445 136 HOH HOH . F 5 HOH A 46 446 67 HOH HOH . F 5 HOH A 47 447 169 HOH HOH . F 5 HOH A 48 448 105 HOH HOH . F 5 HOH A 49 449 159 HOH HOH . F 5 HOH A 50 450 110 HOH HOH . F 5 HOH A 51 451 183 HOH HOH . F 5 HOH A 52 452 62 HOH HOH . F 5 HOH A 53 453 69 HOH HOH . F 5 HOH A 54 454 190 HOH HOH . F 5 HOH A 55 455 143 HOH HOH . F 5 HOH A 56 456 24 HOH HOH . F 5 HOH A 57 457 38 HOH HOH . F 5 HOH A 58 458 120 HOH HOH . F 5 HOH A 59 459 121 HOH HOH . F 5 HOH A 60 460 100 HOH HOH . F 5 HOH A 61 461 106 HOH HOH . F 5 HOH A 62 462 124 HOH HOH . F 5 HOH A 63 463 127 HOH HOH . F 5 HOH A 64 464 182 HOH HOH . F 5 HOH A 65 465 186 HOH HOH . F 5 HOH A 66 466 184 HOH HOH . F 5 HOH A 67 467 85 HOH HOH . F 5 HOH A 68 468 128 HOH HOH . F 5 HOH A 69 469 41 HOH HOH . F 5 HOH A 70 470 8 HOH HOH . F 5 HOH A 71 471 156 HOH HOH . F 5 HOH A 72 472 91 HOH HOH . F 5 HOH A 73 473 88 HOH HOH . F 5 HOH A 74 474 5 HOH HOH . F 5 HOH A 75 475 35 HOH HOH . F 5 HOH A 76 476 191 HOH HOH . F 5 HOH A 77 477 153 HOH HOH . F 5 HOH A 78 478 39 HOH HOH . F 5 HOH A 79 479 189 HOH HOH . F 5 HOH A 80 480 173 HOH HOH . F 5 HOH A 81 481 118 HOH HOH . F 5 HOH A 82 482 160 HOH HOH . F 5 HOH A 83 483 33 HOH HOH . F 5 HOH A 84 484 95 HOH HOH . F 5 HOH A 85 485 163 HOH HOH . F 5 HOH A 86 486 200 HOH HOH . F 5 HOH A 87 487 181 HOH HOH . F 5 HOH A 88 488 155 HOH HOH . F 5 HOH A 89 489 114 HOH HOH . F 5 HOH A 90 490 157 HOH HOH . F 5 HOH A 91 491 192 HOH HOH . G 5 HOH B 1 601 205 HOH HOH . G 5 HOH B 2 602 2 HOH HOH . G 5 HOH B 3 603 58 HOH HOH . G 5 HOH B 4 604 92 HOH HOH . G 5 HOH B 5 605 133 HOH HOH . G 5 HOH B 6 606 52 HOH HOH . G 5 HOH B 7 607 151 HOH HOH . G 5 HOH B 8 608 199 HOH HOH . G 5 HOH B 9 609 167 HOH HOH . G 5 HOH B 10 610 57 HOH HOH . G 5 HOH B 11 611 14 HOH HOH . G 5 HOH B 12 612 7 HOH HOH . G 5 HOH B 13 613 22 HOH HOH . G 5 HOH B 14 614 148 HOH HOH . G 5 HOH B 15 615 16 HOH HOH . G 5 HOH B 16 616 206 HOH HOH . G 5 HOH B 17 617 158 HOH HOH . G 5 HOH B 18 618 48 HOH HOH . G 5 HOH B 19 619 208 HOH HOH . G 5 HOH B 20 620 45 HOH HOH . G 5 HOH B 21 621 40 HOH HOH . G 5 HOH B 22 622 90 HOH HOH . G 5 HOH B 23 623 83 HOH HOH . G 5 HOH B 24 624 141 HOH HOH . G 5 HOH B 25 625 46 HOH HOH . G 5 HOH B 26 626 36 HOH HOH . G 5 HOH B 27 627 26 HOH HOH . G 5 HOH B 28 628 146 HOH HOH . G 5 HOH B 29 629 76 HOH HOH . G 5 HOH B 30 630 170 HOH HOH . G 5 HOH B 31 631 103 HOH HOH . G 5 HOH B 32 632 13 HOH HOH . G 5 HOH B 33 633 55 HOH HOH . G 5 HOH B 34 634 70 HOH HOH . G 5 HOH B 35 635 79 HOH HOH . G 5 HOH B 36 636 96 HOH HOH . G 5 HOH B 37 637 168 HOH HOH . G 5 HOH B 38 638 108 HOH HOH . G 5 HOH B 39 639 49 HOH HOH . G 5 HOH B 40 640 113 HOH HOH . G 5 HOH B 41 641 178 HOH HOH . G 5 HOH B 42 642 180 HOH HOH . G 5 HOH B 43 643 130 HOH HOH . G 5 HOH B 44 644 204 HOH HOH . G 5 HOH B 45 645 145 HOH HOH . G 5 HOH B 46 646 152 HOH HOH . G 5 HOH B 47 647 23 HOH HOH . G 5 HOH B 48 648 31 HOH HOH . G 5 HOH B 49 649 17 HOH HOH . G 5 HOH B 50 650 147 HOH HOH . G 5 HOH B 51 651 71 HOH HOH . G 5 HOH B 52 652 202 HOH HOH . G 5 HOH B 53 653 125 HOH HOH . G 5 HOH B 54 654 126 HOH HOH . G 5 HOH B 55 655 119 HOH HOH . G 5 HOH B 56 656 93 HOH HOH . G 5 HOH B 57 657 135 HOH HOH . G 5 HOH B 58 658 3 HOH HOH . G 5 HOH B 59 659 107 HOH HOH . G 5 HOH B 60 660 116 HOH HOH . G 5 HOH B 61 661 61 HOH HOH . G 5 HOH B 62 662 150 HOH HOH . G 5 HOH B 63 663 20 HOH HOH . G 5 HOH B 64 664 99 HOH HOH . G 5 HOH B 65 665 112 HOH HOH . G 5 HOH B 66 666 11 HOH HOH . G 5 HOH B 67 667 207 HOH HOH . G 5 HOH B 68 668 104 HOH HOH . G 5 HOH B 69 669 209 HOH HOH . G 5 HOH B 70 670 97 HOH HOH . G 5 HOH B 71 671 84 HOH HOH . G 5 HOH B 72 672 68 HOH HOH . G 5 HOH B 73 673 89 HOH HOH . G 5 HOH B 74 674 203 HOH HOH . G 5 HOH B 75 675 60 HOH HOH . G 5 HOH B 76 676 131 HOH HOH . G 5 HOH B 77 677 144 HOH HOH . G 5 HOH B 78 678 82 HOH HOH . G 5 HOH B 79 679 21 HOH HOH . G 5 HOH B 80 680 27 HOH HOH . G 5 HOH B 81 681 63 HOH HOH . G 5 HOH B 82 682 86 HOH HOH . G 5 HOH B 83 683 175 HOH HOH . G 5 HOH B 84 684 64 HOH HOH . G 5 HOH B 85 685 73 HOH HOH . G 5 HOH B 86 686 109 HOH HOH . G 5 HOH B 87 687 10 HOH HOH . G 5 HOH B 88 688 25 HOH HOH . G 5 HOH B 89 689 78 HOH HOH . G 5 HOH B 90 690 171 HOH HOH . G 5 HOH B 91 691 80 HOH HOH . G 5 HOH B 92 692 4 HOH HOH . G 5 HOH B 93 693 6 HOH HOH . G 5 HOH B 94 694 59 HOH HOH . G 5 HOH B 95 695 161 HOH HOH . G 5 HOH B 96 696 54 HOH HOH . G 5 HOH B 97 697 56 HOH HOH . G 5 HOH B 98 698 193 HOH HOH . H 5 HOH C 1 101 210 HOH HOH . H 5 HOH C 2 102 94 HOH HOH . H 5 HOH C 3 103 172 HOH HOH . H 5 HOH C 4 104 139 HOH HOH . H 5 HOH C 5 105 18 HOH HOH . H 5 HOH C 6 106 164 HOH HOH . H 5 HOH C 7 107 34 HOH HOH . H 5 HOH C 8 108 15 HOH HOH . H 5 HOH C 9 109 201 HOH HOH . H 5 HOH C 10 110 74 HOH HOH . H 5 HOH C 11 111 211 HOH HOH . H 5 HOH C 12 112 137 HOH HOH . H 5 HOH C 13 113 132 HOH HOH . H 5 HOH C 14 114 176 HOH HOH . H 5 HOH C 15 115 72 HOH HOH . H 5 HOH C 16 116 9 HOH HOH . H 5 HOH C 17 117 142 HOH HOH . H 5 HOH C 18 118 117 HOH HOH . H 5 HOH C 19 119 122 HOH HOH . H 5 HOH C 20 120 185 HOH HOH . H 5 HOH C 21 121 43 HOH HOH . H 5 HOH C 22 122 212 HOH HOH . H 5 HOH C 23 123 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 4 19.497 2.932 188.11 1 61.46 ? C1 MPD 301 A 1 HETATM 2 C C2 MPD . . . D 4 20.808 3.589 187.666 1 62.89 ? C2 MPD 301 A 1 HETATM 3 O O2 MPD . . . D 4 20.805 4.903 188.285 1 66.67 ? O2 MPD 301 A 1 HETATM 4 C CM MPD . . . D 4 21.961 2.661 188.134 1 62.33 ? CM MPD 301 A 1 HETATM 5 C C3 MPD . . . D 4 20.81 3.826 186.126 1 49.82 ? C3 MPD 301 A 1 HETATM 6 C C4 MPD . . . D 4 22.146 3.925 185.363 1 39.24 ? C4 MPD 301 A 1 HETATM 7 O O4 MPD . . . D 4 21.828 3.625 183.994 1 33.31 ? O4 MPD 301 A 1 HETATM 8 C C5 MPD . . . D 4 22.842 5.285 185.465 1 36.27 ? C5 MPD 301 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #