data_4YC4
#
_model_server_result.job_id            BPyZfUnjsveLtiATQuqATg 
_model_server_result.datetime_utc      '2024-10-12 13:26:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yc4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1201}' 
#
_entry.id    4YC4 
#
_exptl.entry_id    4YC4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              259.307 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(1S,3S,4S)-3-(6-amino-9H-purin-9-yl)bicyclo[2.2.1]hept-1-yl]methanol' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YC4 
_cell.length_a            79.414 
_cell.length_b            103.77 
_cell.length_c            78.109 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YC4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C13 H17 N5 O' 
_chem_comp.formula_weight    259.307 
_chem_comp.id                M59 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(1S,3S,4S)-3-(6-amino-9H-purin-9-yl)bicyclo[2.2.1]hept-1-yl]methanol' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N5 C4 M59 doub 262 n y 
N5 C6 M59 sing 263 n y 
C4 N3 M59 sing 264 n y 
N8 C6 M59 sing 265 n n 
C6 C7 M59 doub 266 n y 
N3 C2 M59 doub 267 n y 
C7 C2 M59 sing 268 n y 
C7 N14 M59 sing 269 n y 
C2 N18 M59 sing 270 n y 
N14 C15 M59 doub 271 n y 
N18 C1 M59 sing 272 n n 
N18 C15 M59 sing 273 n y 
C1 C3 M59 sing 274 n n 
C1 C10 M59 sing 275 n n 
C3 C5 M59 sing 276 n n 
C10 C9 M59 sing 277 n n 
C10 C11 M59 sing 278 n n 
C9 C8 M59 sing 279 n n 
C5 C11 M59 sing 280 n n 
C5 C8 M59 sing 281 n n 
C5 C12 M59 sing 282 n n 
C12 O13 M59 sing 283 n n 
C4 H1 M59 sing 284 n n 
N8 H2 M59 sing 285 n n 
N8 H3 M59 sing 286 n n 
C15 H4 M59 sing 287 n n 
C1 H5 M59 sing 288 n n 
C3 H6 M59 sing 289 n n 
C3 H7 M59 sing 290 n n 
C8 H8 M59 sing 291 n n 
C8 H9 M59 sing 292 n n 
C9 H10 M59 sing 293 n n 
C9 H11 M59 sing 294 n n 
C10 H12 M59 sing 295 n n 
C11 H13 M59 sing 296 n n 
C11 H14 M59 sing 297 n n 
C12 H15 M59 sing 298 n n 
C12 H16 M59 sing 299 n n 
O13 H17 M59 sing 300 n n 
#
_atom_sites.entry_id                     4YC4 
_atom_sites.fract_transf_matrix[1][1]    0.012592 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009637 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012803 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 M59 A 1 1201 1 M59 M59 . 
C 3 ADP A 1 1202 2 ADP ADP . 
D 4 HOH A 1 1301 5 HOH HOH . 
D 4 HOH A 2 1302 6 HOH HOH . 
D 4 HOH A 3 1303 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 M59 . . . B 2 21.942 235.597 64.616 1 62.61 ? C2 M59 1201 A 1 
HETATM 2 N N3 M59 . . . B 2 22.38 236.359 63.582 1 61.63 ? N3 M59 1201 A 1 
HETATM 3 C C4 M59 . . . B 2 23.012 235.797 62.551 1 56.26 ? C4 M59 1201 A 1 
HETATM 4 N N5 M59 . . . B 2 23.218 234.473 62.48 1 56.99 ? N5 M59 1201 A 1 
HETATM 5 C C6 M59 . . . B 2 22.798 233.653 63.461 1 58.01 ? C6 M59 1201 A 1 
HETATM 6 C C7 M59 . . . B 2 22.14 234.219 64.565 1 59.5 ? C7 M59 1201 A 1 
HETATM 7 N N8 M59 . . . B 2 23.044 232.182 63.317 1 46.11 ? N8 M59 1201 A 1 
HETATM 8 N N14 M59 . . . B 2 21.595 233.704 65.697 1 60.18 ? N14 M59 1201 A 1 
HETATM 9 C C15 M59 . . . B 2 21.089 234.737 66.416 1 69.4 ? C15 M59 1201 A 1 
HETATM 10 N N18 M59 . . . B 2 21.29 235.896 65.758 1 67.86 ? N18 M59 1201 A 1 
HETATM 11 C C1 M59 . . . B 2 20.851 237.235 66.24 1 66.6 ? C1 M59 1201 A 1 
HETATM 12 C C3 M59 . . . B 2 19.524 237.083 66.992 1 72.3 ? C3 M59 1201 A 1 
HETATM 13 C C5 M59 . . . B 2 19.926 237.25 68.456 1 77.13 ? C5 M59 1201 A 1 
HETATM 14 C C8 M59 . . . B 2 20.084 238.731 68.704 1 82.74 ? C8 M59 1201 A 1 
HETATM 15 C C9 M59 . . . B 2 21.293 239.058 67.818 1 82.84 ? C9 M59 1201 A 1 
HETATM 16 C C10 M59 . . . B 2 21.771 237.692 67.339 1 74.4 ? C10 M59 1201 A 1 
HETATM 17 C C11 M59 . . . B 2 21.363 236.792 68.489 1 75.93 ? C11 M59 1201 A 1 
HETATM 18 C C12 M59 . . . B 2 19.008 236.595 69.501 1 74.68 ? C12 M59 1201 A 1 
HETATM 19 O O13 M59 . . . B 2 19.374 235.236 69.791 1 71 ? O13 M59 1201 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           19 
#