data_4YC8 # _model_server_result.job_id wNQ5jzu3XkO1f6VudSqjeQ _model_server_result.datetime_utc '2024-10-28 02:41:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4YC8 # _exptl.entry_id 4YC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 531.629 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-({6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl}amino)-N-(4-phenoxyphenyl)-1,3-thiazole-5-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YC8 _cell.length_a 112.76 _cell.length_b 127.1 _cell.length_c 57.17 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C27 H29 N7 O3 S' _chem_comp.formula_weight 531.629 _chem_comp.id 4B7 _chem_comp.mon_nstd_flag . _chem_comp.name 2-({6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl}amino)-N-(4-phenoxyphenyl)-1,3-thiazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C13 4B7 doub 1 n y C12 C5 4B7 sing 2 n y C13 C2 4B7 sing 3 n y O2 C6 4B7 sing 4 n n O2 C5 4B7 sing 5 n n C7 C6 4B7 doub 6 n y C7 C8 4B7 sing 7 n y C6 C11 4B7 sing 8 n y C5 C4 4B7 doub 9 n y C8 C9 4B7 doub 10 n y C11 C10 4B7 doub 11 n y C9 C10 4B7 sing 12 n y C2 N1 4B7 sing 13 n n C2 C3 4B7 doub 14 n y N1 C1 4B7 sing 15 n n C4 C3 4B7 sing 16 n y C15 C14 4B7 doub 17 n y C15 N2 4B7 sing 18 n y C1 C14 4B7 sing 19 n n C1 O1 4B7 doub 20 n n C14 S 4B7 sing 21 n y N2 C16 4B7 doub 22 n y C16 S 4B7 sing 23 n y C16 N3 4B7 sing 24 n n N3 C17 4B7 sing 25 n n C17 C27 4B7 doub 26 n y C17 N4 4B7 sing 27 n y C27 C20 4B7 sing 28 n y N4 C18 4B7 doub 29 n y C18 N5 4B7 sing 30 n y C18 C19 4B7 sing 31 n n C20 N5 4B7 doub 32 n y C20 N6 4B7 sing 33 n n C21 N6 4B7 sing 34 n n C21 C22 4B7 sing 35 n n N6 C26 4B7 sing 36 n n C26 C25 4B7 sing 37 n n C22 N7 4B7 sing 38 n n C25 N7 4B7 sing 39 n n N7 C23 4B7 sing 40 n n C23 C24 4B7 sing 41 n n O3 C24 4B7 sing 42 n n N1 H2 4B7 sing 43 n n C13 H11 4B7 sing 44 n n C12 H10 4B7 sing 45 n n C11 H9 4B7 sing 46 n n C10 H8 4B7 sing 47 n n C9 H7 4B7 sing 48 n n C8 H6 4B7 sing 49 n n C7 H5 4B7 sing 50 n n C4 H4 4B7 sing 51 n n C3 H3 4B7 sing 52 n n C15 H12 4B7 sing 53 n n N3 H13 4B7 sing 54 n n C27 H30 4B7 sing 55 n n C19 H14 4B7 sing 56 n n C19 H15 4B7 sing 57 n n C19 H16 4B7 sing 58 n n C26 H28 4B7 sing 59 n n C26 H29 4B7 sing 60 n n C25 H27 4B7 sing 61 n n C25 H26 4B7 sing 62 n n C22 H19 4B7 sing 63 n n C22 H20 4B7 sing 64 n n C21 H17 4B7 sing 65 n n C21 H18 4B7 sing 66 n n C23 H22 4B7 sing 67 n n C23 H21 4B7 sing 68 n n C24 H23 4B7 sing 69 n n C24 H24 4B7 sing 70 n n O3 H25 4B7 sing 71 n n # _atom_sites.entry_id 4YC8 _atom_sites.fract_transf_matrix[1][1] 0.008868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4B7 A 1 601 1 4B7 UNL . D 3 EDO A 1 602 2 EDO EDO . E 4 MES A 1 603 3 MES MES . F 2 4B7 B 1 601 1 4B7 UNL . G 3 EDO B 1 602 2 EDO EDO . H 4 MES B 1 603 3 MES MES . I 5 HOH A 1 701 8 HOH HOH . I 5 HOH A 2 702 9 HOH HOH . I 5 HOH A 3 703 4 HOH HOH . I 5 HOH A 4 704 5 HOH HOH . I 5 HOH A 5 705 6 HOH HOH . I 5 HOH A 6 706 7 HOH HOH . J 5 HOH B 1 701 5 HOH HOH . J 5 HOH B 2 702 4 HOH HOH . J 5 HOH B 3 703 6 HOH HOH . J 5 HOH B 4 704 7 HOH HOH . J 5 HOH B 5 705 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 4B7 . . . C 2 15.872 46.713 2.805 1 31.82 ? O1 4B7 601 A 1 HETATM 2 C C1 4B7 . . . C 2 15.211 46.171 1.92 1 29.24 ? C1 4B7 601 A 1 HETATM 3 N N1 4B7 . . . C 2 15.607 45.046 1.251 1 29.49 ? N1 4B7 601 A 1 HETATM 4 C C2 4B7 . . . C 2 16.706 44.212 1.548 1 32.86 ? C2 4B7 601 A 1 HETATM 5 C C13 4B7 . . . C 2 17.13 43.396 0.491 1 34.9 ? C13 4B7 601 A 1 HETATM 6 C C12 4B7 . . . C 2 18.254 42.61 0.605 1 37.88 ? C12 4B7 601 A 1 HETATM 7 C C5 4B7 . . . C 2 19.01 42.647 1.782 1 40.96 ? C5 4B7 601 A 1 HETATM 8 O O2 4B7 . . . C 2 20.159 41.883 1.762 1 45.74 ? O2 4B7 601 A 1 HETATM 9 C C6 4B7 . . . C 2 20.431 41.101 2.879 1 47.76 ? C6 4B7 601 A 1 HETATM 10 C C11 4B7 . . . C 2 19.47 40.104 3.253 1 47.47 ? C11 4B7 601 A 1 HETATM 11 C C10 4B7 . . . C 2 19.731 39.357 4.397 1 45.91 ? C10 4B7 601 A 1 HETATM 12 C C9 4B7 . . . C 2 20.882 39.58 5.147 1 45.03 ? C9 4B7 601 A 1 HETATM 13 C C8 4B7 . . . C 2 21.81 40.554 4.767 1 44.28 ? C8 4B7 601 A 1 HETATM 14 C C7 4B7 . . . C 2 21.6 41.32 3.625 1 45.87 ? C7 4B7 601 A 1 HETATM 15 C C4 4B7 . . . C 2 18.616 43.445 2.849 1 38.05 ? C4 4B7 601 A 1 HETATM 16 C C3 4B7 . . . C 2 17.47 44.228 2.733 1 35.74 ? C3 4B7 601 A 1 HETATM 17 C C14 4B7 . . . C 2 13.995 46.846 1.437 1 26.63 ? C14 4B7 601 A 1 HETATM 18 C C15 4B7 . . . C 2 12.781 46.339 0.997 1 22.05 ? C15 4B7 601 A 1 HETATM 19 N N2 4B7 . . . C 2 11.828 47.324 0.69 1 19.8 ? N2 4B7 601 A 1 HETATM 20 C C16 4B7 . . . C 2 12.395 48.547 0.91 1 22.19 ? C16 4B7 601 A 1 HETATM 21 S S 4B7 . . . C 2 14.009 48.493 1.473 1 27.61 ? S 4B7 601 A 1 HETATM 22 N N3 4B7 . . . C 2 11.714 49.746 0.586 1 20.68 ? N3 4B7 601 A 1 HETATM 23 C C17 4B7 . . . C 2 12.198 51.064 0.747 1 22.04 ? C17 4B7 601 A 1 HETATM 24 C C27 4B7 . . . C 2 11.388 52.158 0.276 1 24.77 ? C27 4B7 601 A 1 HETATM 25 C C20 4B7 . . . C 2 11.968 53.456 0.321 1 27.66 ? C20 4B7 601 A 1 HETATM 26 N N5 4B7 . . . C 2 13.246 53.676 0.822 1 27.2 ? N5 4B7 601 A 1 HETATM 27 C C18 4B7 . . . C 2 13.944 52.568 1.273 1 23.33 ? C18 4B7 601 A 1 HETATM 28 C C19 4B7 . . . C 2 15.365 52.811 1.747 1 18.66 ? C19 4B7 601 A 1 HETATM 29 N N4 4B7 . . . C 2 13.473 51.277 1.269 1 22.29 ? N4 4B7 601 A 1 HETATM 30 N N6 4B7 . . . C 2 11.328 54.643 -0.169 1 32.57 ? N6 4B7 601 A 1 HETATM 31 C C26 4B7 . . . C 2 11.895 56.014 -0.053 1 34.48 ? C26 4B7 601 A 1 HETATM 32 C C25 4B7 . . . C 2 10.97 56.801 0.868 1 37.25 ? C25 4B7 601 A 1 HETATM 33 N N7 4B7 . . . C 2 9.599 56.849 0.269 1 39.15 1 N7 4B7 601 A 1 HETATM 34 C C22 4B7 . . . C 2 9.078 55.458 0.09 1 39.47 ? C22 4B7 601 A 1 HETATM 35 C C21 4B7 . . . C 2 10.01 54.686 -0.836 1 35.82 ? C21 4B7 601 A 1 HETATM 36 H H2 4B7 . . . C 2 15.058 44.779 0.441 0 29.48 ? H2 4B7 601 A 1 HETATM 37 H H11 4B7 . . . C 2 16.622 43.406 -0.472 0 35.07 ? H11 4B7 601 A 1 HETATM 38 H H10 4B7 . . . C 2 18.532 41.941 -0.207 0 37.78 ? H10 4B7 601 A 1 HETATM 39 H H9 4B7 . . . C 2 18.568 39.939 2.664 0 47.22 ? H9 4B7 601 A 1 HETATM 40 H H8 4B7 . . . C 2 19.036 38.587 4.724 0 45.89 ? H8 4B7 601 A 1 HETATM 41 H H7 4B7 . . . C 2 21.047 38.986 6.043 0 45.13 ? H7 4B7 601 A 1 HETATM 42 H H6 4B7 . . . C 2 22.696 40.718 5.376 0 44.23 ? H6 4B7 601 A 1 HETATM 43 H H5 4B7 . . . C 2 22.327 42.067 3.311 0 45.57 ? H5 4B7 601 A 1 HETATM 44 H H4 4B7 . . . C 2 19.179 43.463 3.78 0 37.84 ? H4 4B7 601 A 1 HETATM 45 H H3 4B7 . . . C 2 17.219 44.831 3.603 0 35.75 ? H3 4B7 601 A 1 HETATM 46 H H12 4B7 . . . C 2 12.513 45.291 0.878 0 21.95 ? H12 4B7 601 A 1 HETATM 47 H H13 4B7 . . . C 2 10.791 49.623 0.183 0 20.53 ? H13 4B7 601 A 1 HETATM 48 H H30 4B7 . . . C 2 10.383 51.967 -0.093 0 24.34 ? H30 4B7 601 A 1 HETATM 49 H H14 4B7 . . . C 2 15.906 53.516 1.119 0 18.65 ? H14 4B7 601 A 1 HETATM 50 H H15 4B7 . . . C 2 15.385 53.231 2.751 0 18.65 ? H15 4B7 601 A 1 HETATM 51 H H16 4B7 . . . C 2 15.935 51.883 1.771 0 18.65 ? H16 4B7 601 A 1 HETATM 52 H H28 4B7 . . . C 2 11.996 56.48 -1.031 0 34.4 ? H28 4B7 601 A 1 HETATM 53 H H29 4B7 . . . C 2 12.904 56.051 0.353 0 34.4 ? H29 4B7 601 A 1 HETATM 54 H H27 4B7 . . . C 2 11.371 57.797 1.053 0 37.25 ? H27 4B7 601 A 1 HETATM 55 H H26 4B7 . . . C 2 10.917 56.343 1.854 0 37.25 ? H26 4B7 601 A 1 HETATM 56 H H19 4B7 . . . C 2 8.044 55.456 -0.255 0 39.61 ? H19 4B7 601 A 1 HETATM 57 H H20 4B7 . . . C 2 9.022 54.966 1.059 0 39.61 ? H20 4B7 601 A 1 HETATM 58 H H17 4B7 . . . C 2 10.051 55.181 -1.805 0 35.77 ? H17 4B7 601 A 1 HETATM 59 H H18 4B7 . . . C 2 9.625 53.699 -1.082 0 35.77 ? H18 4B7 601 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 59 #