data_4YC8 # _model_server_result.job_id N1ZWGR5Tv_45Hl2xPmWlUw _model_server_result.datetime_utc '2024-12-01 12:23:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 4YC8 # _exptl.entry_id 4YC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 531.629 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-({6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl}amino)-N-(4-phenoxyphenyl)-1,3-thiazole-5-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YC8 _cell.length_a 112.76 _cell.length_b 127.1 _cell.length_c 57.17 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C27 H29 N7 O3 S' _chem_comp.formula_weight 531.629 _chem_comp.id 4B7 _chem_comp.mon_nstd_flag . _chem_comp.name 2-({6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl}amino)-N-(4-phenoxyphenyl)-1,3-thiazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C13 4B7 doub 1 n y C12 C5 4B7 sing 2 n y C13 C2 4B7 sing 3 n y O2 C6 4B7 sing 4 n n O2 C5 4B7 sing 5 n n C7 C6 4B7 doub 6 n y C7 C8 4B7 sing 7 n y C6 C11 4B7 sing 8 n y C5 C4 4B7 doub 9 n y C8 C9 4B7 doub 10 n y C11 C10 4B7 doub 11 n y C9 C10 4B7 sing 12 n y C2 N1 4B7 sing 13 n n C2 C3 4B7 doub 14 n y N1 C1 4B7 sing 15 n n C4 C3 4B7 sing 16 n y C15 C14 4B7 doub 17 n y C15 N2 4B7 sing 18 n y C1 C14 4B7 sing 19 n n C1 O1 4B7 doub 20 n n C14 S 4B7 sing 21 n y N2 C16 4B7 doub 22 n y C16 S 4B7 sing 23 n y C16 N3 4B7 sing 24 n n N3 C17 4B7 sing 25 n n C17 C27 4B7 doub 26 n y C17 N4 4B7 sing 27 n y C27 C20 4B7 sing 28 n y N4 C18 4B7 doub 29 n y C18 N5 4B7 sing 30 n y C18 C19 4B7 sing 31 n n C20 N5 4B7 doub 32 n y C20 N6 4B7 sing 33 n n C21 N6 4B7 sing 34 n n C21 C22 4B7 sing 35 n n N6 C26 4B7 sing 36 n n C26 C25 4B7 sing 37 n n C22 N7 4B7 sing 38 n n C25 N7 4B7 sing 39 n n N7 C23 4B7 sing 40 n n C23 C24 4B7 sing 41 n n O3 C24 4B7 sing 42 n n N1 H2 4B7 sing 43 n n C13 H11 4B7 sing 44 n n C12 H10 4B7 sing 45 n n C11 H9 4B7 sing 46 n n C10 H8 4B7 sing 47 n n C9 H7 4B7 sing 48 n n C8 H6 4B7 sing 49 n n C7 H5 4B7 sing 50 n n C4 H4 4B7 sing 51 n n C3 H3 4B7 sing 52 n n C15 H12 4B7 sing 53 n n N3 H13 4B7 sing 54 n n C27 H30 4B7 sing 55 n n C19 H14 4B7 sing 56 n n C19 H15 4B7 sing 57 n n C19 H16 4B7 sing 58 n n C26 H28 4B7 sing 59 n n C26 H29 4B7 sing 60 n n C25 H27 4B7 sing 61 n n C25 H26 4B7 sing 62 n n C22 H19 4B7 sing 63 n n C22 H20 4B7 sing 64 n n C21 H17 4B7 sing 65 n n C21 H18 4B7 sing 66 n n C23 H22 4B7 sing 67 n n C23 H21 4B7 sing 68 n n C24 H23 4B7 sing 69 n n C24 H24 4B7 sing 70 n n O3 H25 4B7 sing 71 n n # _atom_sites.entry_id 4YC8 _atom_sites.fract_transf_matrix[1][1] 0.008868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4B7 A 1 601 1 4B7 UNL . D 3 EDO A 1 602 2 EDO EDO . E 4 MES A 1 603 3 MES MES . F 2 4B7 B 1 601 1 4B7 UNL . G 3 EDO B 1 602 2 EDO EDO . H 4 MES B 1 603 3 MES MES . I 5 HOH A 1 701 8 HOH HOH . I 5 HOH A 2 702 9 HOH HOH . I 5 HOH A 3 703 4 HOH HOH . I 5 HOH A 4 704 5 HOH HOH . I 5 HOH A 5 705 6 HOH HOH . I 5 HOH A 6 706 7 HOH HOH . J 5 HOH B 1 701 5 HOH HOH . J 5 HOH B 2 702 4 HOH HOH . J 5 HOH B 3 703 6 HOH HOH . J 5 HOH B 4 704 7 HOH HOH . J 5 HOH B 5 705 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 4B7 . . . F 2 44.359 29.346 17.885 1 33.94 ? O1 4B7 601 B 1 HETATM 2 C C1 4B7 . . . F 2 43.586 30.208 17.467 1 30.77 ? C1 4B7 601 B 1 HETATM 3 N N1 4B7 . . . F 2 43.826 31 16.371 1 28.18 ? N1 4B7 601 B 1 HETATM 4 C C2 4B7 . . . F 2 44.857 30.888 15.411 1 29.91 ? C2 4B7 601 B 1 HETATM 5 C C13 4B7 . . . F 2 45.103 32.066 14.654 1 30.78 ? C13 4B7 601 B 1 HETATM 6 C C12 4B7 . . . F 2 46.122 32.123 13.718 1 30.75 ? C12 4B7 601 B 1 HETATM 7 C C5 4B7 . . . F 2 46.934 31.006 13.528 1 32.19 ? C5 4B7 601 B 1 HETATM 8 O O2 4B7 . . . F 2 47.926 31.228 12.641 1 36.01 ? O2 4B7 601 B 1 HETATM 9 C C6 4B7 . . . F 2 48.119 30.332 11.629 1 40.29 ? C6 4B7 601 B 1 HETATM 10 C C11 4B7 . . . F 2 49.456 29.915 11.481 1 42.12 ? C11 4B7 601 B 1 HETATM 11 C C10 4B7 . . . F 2 49.776 29.053 10.432 1 43.46 ? C10 4B7 601 B 1 HETATM 12 C C9 4B7 . . . F 2 48.778 28.618 9.552 1 44.48 ? C9 4B7 601 B 1 HETATM 13 C C8 4B7 . . . F 2 47.44 29.032 9.716 1 44.32 ? C8 4B7 601 B 1 HETATM 14 C C7 4B7 . . . F 2 47.09 29.9 10.762 1 42.65 ? C7 4B7 601 B 1 HETATM 15 C C4 4B7 . . . F 2 46.744 29.825 14.25 1 31.51 ? C4 4B7 601 B 1 HETATM 16 C C3 4B7 . . . F 2 45.704 29.764 15.201 1 31.66 ? C3 4B7 601 B 1 HETATM 17 C C14 4B7 . . . F 2 42.382 30.516 18.266 1 30.66 ? C14 4B7 601 B 1 HETATM 18 C C15 4B7 . . . F 2 41.164 31.079 17.901 1 29.38 ? C15 4B7 601 B 1 HETATM 19 N N2 4B7 . . . F 2 40.249 31.206 18.958 1 30.43 ? N2 4B7 601 B 1 HETATM 20 C C16 4B7 . . . F 2 40.837 30.742 20.09 1 31.3 ? C16 4B7 601 B 1 HETATM 21 S S 4B7 . . . F 2 42.423 30.129 19.867 1 32.19 ? S 4B7 601 B 1 HETATM 22 N N3 4B7 . . . F 2 40.214 30.915 21.346 1 32.46 ? N3 4B7 601 B 1 HETATM 23 C C17 4B7 . . . F 2 40.733 30.494 22.604 1 36.84 ? C17 4B7 601 B 1 HETATM 24 C C27 4B7 . . . F 2 40.012 30.761 23.845 1 39.23 ? C27 4B7 601 B 1 HETATM 25 C C20 4B7 . . . F 2 40.678 30.385 25.058 1 41.12 ? C20 4B7 601 B 1 HETATM 26 N N5 4B7 . . . F 2 41.926 29.752 25.061 1 41.53 ? N5 4B7 601 B 1 HETATM 27 C C18 4B7 . . . F 2 42.514 29.542 23.839 1 39.66 ? C18 4B7 601 B 1 HETATM 28 C C19 4B7 . . . F 2 43.865 28.9 23.832 1 37.95 ? C19 4B7 601 B 1 HETATM 29 N N4 4B7 . . . F 2 41.984 29.877 22.624 1 38.18 ? N4 4B7 601 B 1 HETATM 30 N N6 4B7 . . . F 2 40.232 30.734 26.385 1 43.92 ? N6 4B7 601 B 1 HETATM 31 C C26 4B7 . . . F 2 38.965 31.41 26.733 1 46.5 ? C26 4B7 601 B 1 HETATM 32 C C25 4B7 . . . F 2 38.129 30.45 27.573 1 48.01 ? C25 4B7 601 B 1 HETATM 33 N N7 4B7 . . . F 2 38.897 30.022 28.784 1 48.11 1 N7 4B7 601 B 1 HETATM 34 C C22 4B7 . . . F 2 40.221 29.454 28.377 1 46.48 ? C22 4B7 601 B 1 HETATM 35 C C21 4B7 . . . F 2 41.001 30.505 27.612 1 44.58 ? C21 4B7 601 B 1 HETATM 36 C C23 4B7 . . . F 2 38.113 29.036 29.61 1 50.4 ? C23 4B7 601 B 1 HETATM 37 C C24 4B7 . . . F 2 38.405 29.165 31.089 1 54.62 ? C24 4B7 601 B 1 HETATM 38 O O3 4B7 . . . F 2 39.709 28.675 31.415 1 56.45 ? O3 4B7 601 B 1 HETATM 39 H H2 4B7 . . . F 2 43.165 31.749 16.194 0 28.26 ? H2 4B7 601 B 1 HETATM 40 H H11 4B7 . . . F 2 44.532 32.977 14.824 0 30.72 ? H11 4B7 601 B 1 HETATM 41 H H10 4B7 . . . F 2 46.278 33.026 13.13 0 30.57 ? H10 4B7 601 B 1 HETATM 42 H H9 4B7 . . . F 2 50.22 30.261 12.177 0 41.92 ? H9 4B7 601 B 1 HETATM 43 H H8 4B7 . . . F 2 50.805 28.727 10.293 0 43.53 ? H8 4B7 601 B 1 HETATM 44 H H7 4B7 . . . F 2 49.048 27.966 8.725 0 44.64 ? H7 4B7 601 B 1 HETATM 45 H H6 4B7 . . . F 2 46.679 28.672 9.026 0 44.32 ? H6 4B7 601 B 1 HETATM 46 H H5 4B7 . . . F 2 46.058 30.221 10.898 0 42.44 ? H5 4B7 601 B 1 HETATM 47 H H4 4B7 . . . F 2 47.393 28.961 14.108 0 31.54 ? H4 4B7 601 B 1 HETATM 48 H H3 4B7 . . . F 2 45.604 28.829 15.749 0 31.9 ? H3 4B7 601 B 1 HETATM 49 H H12 4B7 . . . F 2 40.866 31.407 16.907 0 29.14 ? H12 4B7 601 B 1 HETATM 50 H H13 4B7 . . . F 2 39.333 31.415 21.331 0 32.1 ? H13 4B7 601 B 1 HETATM 51 H H30 4B7 . . . F 2 39.027 31.224 23.821 0 39.35 ? H30 4B7 601 B 1 HETATM 52 H H14 4B7 . . . F 2 44.439 29.121 24.731 0 37.79 ? H14 4B7 601 B 1 HETATM 53 H H15 4B7 . . . F 2 43.79 27.816 23.758 0 37.79 ? H15 4B7 601 B 1 HETATM 54 H H16 4B7 . . . F 2 44.447 29.243 22.978 0 37.79 ? H16 4B7 601 B 1 HETATM 55 H H28 4B7 . . . F 2 38.442 31.801 25.864 0 46.35 ? H28 4B7 601 B 1 HETATM 56 H H29 4B7 . . . F 2 39.139 32.308 27.325 0 46.35 ? H29 4B7 601 B 1 HETATM 57 H H27 4B7 . . . F 2 37.812 29.601 26.97 0 47.81 ? H27 4B7 601 B 1 HETATM 58 H H26 4B7 . . . F 2 37.195 30.918 27.881 0 47.81 ? H26 4B7 601 B 1 HETATM 59 H H19 4B7 . . . F 2 40.093 28.547 27.789 0 46.33 ? H19 4B7 601 B 1 HETATM 60 H H20 4B7 . . . F 2 40.801 29.115 29.233 0 46.33 ? H20 4B7 601 B 1 HETATM 61 H H17 4B7 . . . F 2 42.027 30.175 27.458 0 44.51 ? H17 4B7 601 B 1 HETATM 62 H H18 4B7 . . . F 2 41.116 31.423 28.186 0 44.51 ? H18 4B7 601 B 1 HETATM 63 H H22 4B7 . . . F 2 38.341 28.026 29.272 0 50.29 ? H22 4B7 601 B 1 HETATM 64 H H21 4B7 . . . F 2 37.045 29.147 29.434 0 50.29 ? H21 4B7 601 B 1 HETATM 65 H H23 4B7 . . . F 2 38.223 30.189 31.413 0 54.6 ? H23 4B7 601 B 1 HETATM 66 H H24 4B7 . . . F 2 37.729 28.555 31.687 0 54.6 ? H24 4B7 601 B 1 HETATM 67 H H25 4B7 . . . F 2 40.055 29.192 32.19 0 56.46 ? H25 4B7 601 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 67 #