data_4YC8 # _model_server_result.job_id STubqWhEfYzAqYY4kHONRQ _model_server_result.datetime_utc '2024-11-29 00:35:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 4YC8 # _exptl.entry_id 4YC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YC8 _cell.length_a 112.76 _cell.length_b 127.1 _cell.length_c 57.17 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 154 n n C1 C2 EDO sing 155 n n C1 H11 EDO sing 156 n n C1 H12 EDO sing 157 n n O1 HO1 EDO sing 158 n n C2 O2 EDO sing 159 n n C2 H21 EDO sing 160 n n C2 H22 EDO sing 161 n n O2 HO2 EDO sing 162 n n # _atom_sites.entry_id 4YC8 _atom_sites.fract_transf_matrix[1][1] 0.008868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4B7 A 1 601 1 4B7 UNL . D 3 EDO A 1 602 2 EDO EDO . E 4 MES A 1 603 3 MES MES . F 2 4B7 B 1 601 1 4B7 UNL . G 3 EDO B 1 602 2 EDO EDO . H 4 MES B 1 603 3 MES MES . I 5 HOH A 1 701 8 HOH HOH . I 5 HOH A 2 702 9 HOH HOH . I 5 HOH A 3 703 4 HOH HOH . I 5 HOH A 4 704 5 HOH HOH . I 5 HOH A 5 705 6 HOH HOH . I 5 HOH A 6 706 7 HOH HOH . J 5 HOH B 1 701 5 HOH HOH . J 5 HOH B 2 702 4 HOH HOH . J 5 HOH B 3 703 6 HOH HOH . J 5 HOH B 4 704 7 HOH HOH . J 5 HOH B 5 705 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 16.123 43.423 11.011 1 57.29 ? C1 EDO 602 A 1 HETATM 2 O O1 EDO . . . D 3 17.157 44.127 11.702 1 57.36 ? O1 EDO 602 A 1 HETATM 3 C C2 EDO . . . D 3 16.471 41.911 10.851 1 57.2 ? C2 EDO 602 A 1 HETATM 4 O O2 EDO . . . D 3 16.773 41.25 12.091 1 55.98 ? O2 EDO 602 A 1 HETATM 5 H H11 EDO . . . D 3 15.144 43.56 11.467 0 57.16 ? H11 EDO 602 A 1 HETATM 6 H H12 EDO . . . D 3 16.08 43.905 10.036 0 57.16 ? H12 EDO 602 A 1 HETATM 7 H HO1 EDO . . . D 3 17.996 43.6 11.638 0 57.31 ? HO1 EDO 602 A 1 HETATM 8 H H21 EDO . . . D 3 15.621 41.358 10.454 0 57.14 ? H21 EDO 602 A 1 HETATM 9 H H22 EDO . . . D 3 17.281 41.821 10.13 0 57.14 ? H22 EDO 602 A 1 HETATM 10 H HO2 EDO . . . D 3 16.52 40.295 11.989 0 55.92 ? HO2 EDO 602 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #