data_4YCL # _model_server_result.job_id IZKt9LlWm-BGQxdBwLWpUw _model_server_result.datetime_utc '2024-10-20 00:02:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ycl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 4YCL # _exptl.entry_id 4YCL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.384 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(6AR,11AS,11BR)-10-ACETYL-9-HYDROXY-7,7-DIMETHYL-2,6,6A,7,11A,11B-HEXAHYDRO-11H-PYRROLO[1',2':2,3]ISOINDOLO[4,5,6-CD]INDOL-11-ONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.09 _cell.angle_gamma 90 _cell.entry_id 4YCL _cell.length_a 63.039 _cell.length_b 96.029 _cell.length_c 155.418 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YCL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 877 A CYS 876 1_555 A SG CYS 889 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 ? metalc ? metalc1 A OE1 GLN 57 A GLN 56 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc2 A OE1 GLN 245 A GLN 244 1_555 B K K . A K 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? metalc ? metalc3 A O LEU 712 A LEU 711 1_555 B K K . A K 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc4 A O LYS 713 A LYS 712 1_555 B K K . A K 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc5 A O ALA 715 A ALA 714 1_555 B K K . A K 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc6 A OE1 GLU 733 A GLU 732 1_555 B K K . A K 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc7 A OE2 GLU 733 A GLU 732 1_555 B K K . A K 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc8 B K K . A K 1001 1_555 E O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc9 C MG MG . A MG 1002 1_555 D O2 CZA . A CZA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc10 C MG MG . A MG 1002 1_555 D O1 CZA . A CZA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc11 C MG MG . A MG 1002 1_555 E O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc12 C MG MG . A MG 1002 1_555 E O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc13 C MG MG . A MG 1002 1_555 E O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? # _chem_comp.formula 'C20 H20 N2 O3' _chem_comp.formula_weight 336.384 _chem_comp.id CZA _chem_comp.mon_nstd_flag . _chem_comp.name "(6AR,11AS,11BR)-10-ACETYL-9-HYDROXY-7,7-DIMETHYL-2,6,6A,7,11A,11B-HEXAHYDRO-11H-PYRROLO[1',2':2,3]ISOINDOLO[4,5,6-CD]INDOL-11-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C6 CZA doub 89 n n C6 C3 CZA sing 90 n n C6 C5 CZA sing 91 n n C3 C4 CZA doub 92 n n C3 C2 CZA sing 93 n n C2 C1 CZA sing 94 n n C2 O1 CZA doub 95 n n C1 H11 CZA sing 96 n n C1 H12 CZA sing 97 n n C1 H13 CZA sing 98 n n C5 N1 CZA sing 99 n n C5 C7 CZA sing 100 n n C5 H5 CZA sing 101 n n C7 C8 CZA sing 102 n n C7 C15 CZA sing 103 n n C7 H7 CZA sing 104 n n C15 C14 CZA sing 105 n y C15 C16 CZA doub 106 n y C16 N2 CZA sing 107 n y C16 H161 CZA sing 108 n n N2 C17 CZA sing 109 n y N2 HN2 CZA sing 110 n n C17 C14 CZA sing 111 n y C17 C18 CZA doub 112 n y C14 C13 CZA doub 113 n y C18 C19 CZA sing 114 n y C18 H18 CZA sing 115 n n C19 C20 CZA doub 116 n y C19 H19 CZA sing 117 n n C20 C13 CZA sing 118 n y C20 H20 CZA sing 119 n n C13 C12 CZA sing 120 n n C12 C8 CZA sing 121 n n C12 H121 CZA sing 122 n n C12 H122 CZA sing 123 n n C8 C9 CZA sing 124 n n C8 H8 CZA sing 125 n n C9 C10 CZA sing 126 n n C9 C11 CZA sing 127 n n C9 N1 CZA sing 128 n n C10 H101 CZA sing 129 n n C10 H102 CZA sing 130 n n C10 H103 CZA sing 131 n n C11 H111 CZA sing 132 n n C11 H112 CZA sing 133 n n C11 H113 CZA sing 134 n n N1 C4 CZA sing 135 n n C4 O3 CZA sing 136 n n O3 HO3 CZA sing 137 n n # _atom_sites.entry_id 4YCL _atom_sites.fract_transf_matrix[1][1] 0.015863 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001414 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 1001 999 K K . C 3 MG A 1 1002 1000 MG MG . D 4 CZA A 1 1003 1001 CZA CZA . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 CZA . . . D 4 25.018 -17.954 15.627 1 180.05 ? O2 CZA 1003 A 1 HETATM 2 C C6 CZA . . . D 4 25.075 -17.669 14.405 1 171.44 ? C6 CZA 1003 A 1 HETATM 3 C C3 CZA . . . D 4 26.122 -17.768 13.365 1 164.47 ? C3 CZA 1003 A 1 HETATM 4 C C2 CZA . . . D 4 27.422 -18.453 13.479 1 160.24 ? C2 CZA 1003 A 1 HETATM 5 O O1 CZA . . . D 4 28.178 -18.068 14.344 1 158.88 ? O1 CZA 1003 A 1 HETATM 6 C C1 CZA . . . D 4 28.026 -19.216 12.254 1 154.23 ? C1 CZA 1003 A 1 HETATM 7 C C5 CZA . . . D 4 23.828 -17.392 13.591 1 167.18 ? C5 CZA 1003 A 1 HETATM 8 C C7 CZA . . . D 4 22.928 -18.597 13.354 1 164.83 ? C7 CZA 1003 A 1 HETATM 9 C C15 CZA . . . D 4 21.901 -18.94 14.404 1 160.57 ? C15 CZA 1003 A 1 HETATM 10 C C16 CZA . . . D 4 21.798 -19.838 15.41 1 160.68 ? C16 CZA 1003 A 1 HETATM 11 N N2 CZA . . . D 4 20.564 -19.665 16.047 1 159.55 ? N2 CZA 1003 A 1 HETATM 12 C C17 CZA . . . D 4 19.827 -18.642 15.464 1 155.52 ? C17 CZA 1003 A 1 HETATM 13 C C14 CZA . . . D 4 20.688 -18.205 14.434 1 156.71 ? C14 CZA 1003 A 1 HETATM 14 C C18 CZA . . . D 4 18.568 -18.001 15.627 1 150.29 ? C18 CZA 1003 A 1 HETATM 15 C C19 CZA . . . D 4 18.177 -16.929 14.762 1 149.57 ? C19 CZA 1003 A 1 HETATM 16 C C20 CZA . . . D 4 19.068 -16.52 13.743 1 152 ? C20 CZA 1003 A 1 HETATM 17 C C13 CZA . . . D 4 20.319 -17.168 13.591 1 154.36 ? C13 CZA 1003 A 1 HETATM 18 C C12 CZA . . . D 4 21.343 -16.809 12.539 1 154.13 ? C12 CZA 1003 A 1 HETATM 19 C C8 CZA . . . D 4 22.248 -18.023 12.072 1 129.45 ? C8 CZA 1003 A 1 HETATM 20 C C9 CZA . . . D 4 23.453 -17.594 11.154 1 166.68 ? C9 CZA 1003 A 1 HETATM 21 C C10 CZA . . . D 4 24.001 -18.708 10.263 1 173.14 ? C10 CZA 1003 A 1 HETATM 22 C C11 CZA . . . D 4 23.207 -16.376 10.282 1 164.32 ? C11 CZA 1003 A 1 HETATM 23 N N1 CZA . . . D 4 24.357 -17.221 12.248 1 164.95 ? N1 CZA 1003 A 1 HETATM 24 C C4 CZA . . . D 4 25.681 -17.071 12.295 1 164.19 ? C4 CZA 1003 A 1 HETATM 25 O O3 CZA . . . D 4 26.38 -16.771 11.166 1 165.16 ? O3 CZA 1003 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 25 #