data_4YCN # _model_server_result.job_id j3ndy49-B7qAxlzqpI-oag _model_server_result.datetime_utc '2024-11-05 23:13:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ycn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1004}' # _entry.id 4YCN # _exptl.entry_id 4YCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.604 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S,5E,8S,9E,11S,13E,15E,18R)-4-hydroxy-8-methoxy-9,11-dimethyl-18-[(1Z,4E)-2-methylhexa-1,4-dien-1-yl]oxacyclooctadeca-5,9,13,15-tetraen-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YCN _cell.length_a 71.54 _cell.length_b 71.54 _cell.length_c 587.669 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 876 A CYS 876 1_555 A SG CYS 888 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C AME 1 A AME 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OE1 GLN 244 A GLN 244 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc2 A O LEU 711 A LEU 711 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? metalc ? metalc3 A O LYS 712 A LYS 712 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc4 A O ALA 714 A ALA 714 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc5 A OE1 GLU 732 A GLU 732 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc6 A OE2 GLU 732 A GLU 732 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? # _chem_comp.formula 'C27 H40 O4' _chem_comp.formula_weight 428.604 _chem_comp.id 7BL _chem_comp.mon_nstd_flag . _chem_comp.name (4S,5E,8S,9E,11S,13E,15E,18R)-4-hydroxy-8-methoxy-9,11-dimethyl-18-[(1Z,4E)-2-methylhexa-1,4-dien-1-yl]oxacyclooctadeca-5,9,13,15-tetraen-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'biselyngbyolide B' # _atom_sites.entry_id 4YCN _atom_sites.fract_transf_matrix[1][1] 0.013978 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1001 1001 NA NA . C 3 SO4 A 1 1002 1007 SO4 SO4 . D 3 SO4 A 1 1003 1008 SO4 SO4 . E 4 7BL A 1 1004 2 7BL 7BL . F 5 PTY A 1 1005 1012 PTY PTY . G 5 PTY A 1 1006 1013 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 7BL . . . E 4 32.441 -15.71 53.288 1 81.71 ? C7 7BL 1004 A 1 HETATM 2 C C6 7BL . . . E 4 31.89 -14.421 52.754 1 66.27 ? C6 7BL 1004 A 1 HETATM 3 C C5 7BL . . . E 4 30.663 -14.027 53.114 1 59.83 ? C5 7BL 1004 A 1 HETATM 4 C C2 7BL . . . E 4 30.177 -12.607 53.009 1 71.98 ? C2 7BL 1004 A 1 HETATM 5 C C1 7BL . . . E 4 29.529 -11.824 54.143 1 89.94 ? C1 7BL 1004 A 1 HETATM 6 C C3 7BL . . . E 4 29.252 -10.395 53.715 1 98.17 ? C3 7BL 1004 A 1 HETATM 7 C C4 7BL . . . E 4 29.096 -12.242 55.355 1 89.11 ? C4 7BL 1004 A 1 HETATM 8 C C8 7BL . . . E 4 29.067 -13.612 55.993 1 83.52 ? C8 7BL 1004 A 1 HETATM 9 C C9 7BL . . . E 4 30.445 -14.056 56.538 1 80.15 ? C9 7BL 1004 A 1 HETATM 10 C C10 7BL . . . E 4 30.481 -15.505 56.966 1 82.89 ? C10 7BL 1004 A 1 HETATM 11 C C11 7BL . . . E 4 31.002 -15.943 58.123 1 85.71 ? C11 7BL 1004 A 1 HETATM 12 C C12 7BL . . . E 4 31.107 -17.384 58.451 1 79.24 ? C12 7BL 1004 A 1 HETATM 13 C C13 7BL . . . E 4 31.662 -17.855 59.574 1 72 ? C13 7BL 1004 A 1 HETATM 14 C C14 7BL . . . E 4 31.754 -19.331 59.899 1 78.83 ? C14 7BL 1004 A 1 HETATM 15 C C15 7BL . . . E 4 31.419 -19.63 61.382 1 81.22 ? C15 7BL 1004 A 1 HETATM 16 C C16 7BL . . . E 4 29.977 -19.256 61.636 1 84.12 ? C16 7BL 1004 A 1 HETATM 17 C C17 7BL . . . E 4 29.434 -18.457 62.571 1 79.53 ? C17 7BL 1004 A 1 HETATM 18 C C18 7BL . . . E 4 30.204 -17.668 63.62 1 79.41 ? C18 7BL 1004 A 1 HETATM 19 C C20 7BL . . . E 4 27.907 -18.307 62.646 1 79.03 ? C20 7BL 1004 A 1 HETATM 20 C C21 7BL . . . E 4 27.463 -17 61.98 1 92.62 ? C21 7BL 1004 A 1 HETATM 21 C C22 7BL . . . E 4 27.216 -16.985 60.511 1 97.28 ? C22 7BL 1004 A 1 HETATM 22 C C23 7BL . . . E 4 26.907 -15.787 60.005 1 103.08 ? C23 7BL 1004 A 1 HETATM 23 C C24 7BL . . . E 4 26.601 -15.591 58.555 1 106.26 ? C24 7BL 1004 A 1 HETATM 24 C C27 7BL . . . E 4 26.287 -14.096 58.268 1 99.83 ? C27 7BL 1004 A 1 HETATM 25 C C26 7BL . . . E 4 26.962 -13.748 56.984 1 101.05 ? C26 7BL 1004 A 1 HETATM 26 O O25 7BL . . . E 4 28.272 -13.575 57.182 1 85.35 ? O25 7BL 1004 A 1 HETATM 27 O O28 7BL . . . E 4 26.367 -13.5 55.952 1 115.41 ? O28 7BL 1004 A 1 HETATM 28 O O29 7BL . . . E 4 25.522 -16.496 58.211 1 108.82 ? O29 7BL 1004 A 1 HETATM 29 O O67 7BL . . . E 4 27.487 -18.094 64.004 1 67.24 ? O67 7BL 1004 A 1 HETATM 30 C C68 7BL . . . E 4 27.423 -19.296 64.762 1 62.25 ? C68 7BL 1004 A 1 HETATM 31 C C19 7BL . . . E 4 31.625 -21.127 61.712 1 77.97 ? C19 7BL 1004 A 1 HETATM 32 H H18 7BL . . . E 4 33.453 -15.869 52.887 1 98.05 ? H18 7BL 1004 A 1 HETATM 33 H H19 7BL . . . E 4 31.792 -16.542 52.985 1 98.05 ? H19 7BL 1004 A 1 HETATM 34 H H20 7BL . . . E 4 32.486 -15.657 54.387 1 98.05 ? H20 7BL 1004 A 1 HETATM 35 H H17 7BL . . . E 4 32.572 -13.695 52.315 1 79.52 ? H17 7BL 1004 A 1 HETATM 36 H H16 7BL . . . E 4 30.013 -14.756 53.602 1 71.79 ? H16 7BL 1004 A 1 HETATM 37 H H15 7BL . . . E 4 29.445 -12.603 52.19 1 86.38 ? H15 7BL 1004 A 1 HETATM 38 H H14 7BL . . . E 4 31.055 -12.015 52.708 1 86.38 ? H14 7BL 1004 A 1 HETATM 39 H H22 7BL . . . E 4 28.611 -10.398 52.822 1 117.81 ? H22 7BL 1004 A 1 HETATM 40 H H23 7BL . . . E 4 30.202 -9.893 53.479 1 117.81 ? H23 7BL 1004 A 1 HETATM 41 H H21 7BL . . . E 4 28.747 -9.858 54.531 1 117.81 ? H21 7BL 1004 A 1 HETATM 42 H H13 7BL . . . E 4 28.646 -11.457 55.964 1 106.93 ? H13 7BL 1004 A 1 HETATM 43 H H12 7BL . . . E 4 28.679 -14.342 55.268 1 100.22 ? H12 7BL 1004 A 1 HETATM 44 H H25 7BL . . . E 4 31.199 -13.907 55.749 1 96.18 ? H25 7BL 1004 A 1 HETATM 45 H H24 7BL . . . E 4 30.699 -13.429 57.406 1 96.18 ? H24 7BL 1004 A 1 HETATM 46 H H26 7BL . . . E 4 30.11 -16.246 56.265 1 99.47 ? H26 7BL 1004 A 1 HETATM 47 H H27 7BL . . . E 4 31.369 -15.213 58.843 1 102.85 ? H27 7BL 1004 A 1 HETATM 48 H H28 7BL . . . E 4 30.666 -18.102 57.759 1 95.08 ? H28 7BL 1004 A 1 HETATM 49 H H29 7BL . . . E 4 32.039 -17.14 60.303 1 86.4 ? H29 7BL 1004 A 1 HETATM 50 H H31 7BL . . . E 4 31.048 -19.879 59.259 1 94.6 ? H31 7BL 1004 A 1 HETATM 51 H H30 7BL . . . E 4 32.777 -19.672 59.693 1 94.6 ? H30 7BL 1004 A 1 HETATM 52 H H32 7BL . . . E 4 32.075 -19.026 62.028 1 97.46 ? H32 7BL 1004 A 1 HETATM 53 H H33 7BL . . . E 4 29.259 -19.735 60.974 1 100.95 ? H33 7BL 1004 A 1 HETATM 54 H H1 7BL . . . E 4 31.281 -17.847 63.497 1 95.29 ? H1 7BL 1004 A 1 HETATM 55 H H3 7BL . . . E 4 29.993 -16.593 63.498 1 95.29 ? H3 7BL 1004 A 1 HETATM 56 H H2 7BL . . . E 4 29.892 -17.992 64.624 1 95.29 ? H2 7BL 1004 A 1 HETATM 57 H H4 7BL . . . E 4 27.41 -19.182 62.204 1 94.83 ? H4 7BL 1004 A 1 HETATM 58 H H5 7BL . . . E 4 28.246 -16.253 62.18 1 111.15 ? H5 7BL 1004 A 1 HETATM 59 H H6 7BL . . . E 4 26.528 -16.685 62.469 1 111.15 ? H6 7BL 1004 A 1 HETATM 60 H H7 7BL . . . E 4 27.323 -17.872 59.889 1 116.73 ? H7 7BL 1004 A 1 HETATM 61 H H8 7BL . . . E 4 26.869 -14.927 60.675 1 123.69 ? H8 7BL 1004 A 1 HETATM 62 H H9 7BL . . . E 4 27.487 -15.874 57.966 1 127.51 ? H9 7BL 1004 A 1 HETATM 63 H H11 7BL . . . E 4 25.202 -13.957 58.172 1 119.8 ? H11 7BL 1004 A 1 HETATM 64 H H10 7BL . . . E 4 26.668 -13.462 59.083 1 119.8 ? H10 7BL 1004 A 1 HETATM 65 H H37 7BL . . . E 4 24.69 -16.097 58.442 1 130.58 ? H37 7BL 1004 A 1 HETATM 66 H H52 7BL . . . E 4 26.705 -19.988 64.295 1 74.7 ? H52 7BL 1004 A 1 HETATM 67 H H51 7BL . . . E 4 28.42 -19.766 64.791 1 74.7 ? H51 7BL 1004 A 1 HETATM 68 H H50 7BL . . . E 4 27.097 -19.067 65.788 1 74.7 ? H50 7BL 1004 A 1 HETATM 69 H H36 7BL . . . E 4 30.974 -21.738 61.069 1 93.56 ? H36 7BL 1004 A 1 HETATM 70 H H35 7BL . . . E 4 32.674 -21.399 61.535 1 93.56 ? H35 7BL 1004 A 1 HETATM 71 H H34 7BL . . . E 4 31.375 -21.308 62.766 1 93.56 ? H34 7BL 1004 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 71 #