data_4YCN # _model_server_result.job_id VZTFpO7Nc-zezZLoCupHjg _model_server_result.datetime_utc '2025-08-24 03:35:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ycn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 4YCN # _exptl.entry_id 4YCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 734.039 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YCN _cell.length_a 71.54 _cell.length_b 71.54 _cell.length_c 587.669 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 876 A CYS 876 1_555 A SG CYS 888 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C AME 1 A AME 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OE1 GLN 244 A GLN 244 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc2 A O LEU 711 A LEU 711 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? metalc ? metalc3 A O LYS 712 A LYS 712 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc4 A O ALA 714 A ALA 714 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc5 A OE1 GLU 732 A GLU 732 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc6 A OE2 GLU 732 A GLU 732 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 370 n n C1 C6 PTY sing 371 n n C1 HC11 PTY sing 372 n n C1 HC12 PTY sing 373 n n C2 C3 PTY sing 374 n n C2 N1 PTY sing 375 n n C2 HC21 PTY sing 376 n n C2 HC22 PTY sing 377 n n C3 O11 PTY sing 378 n n C3 HC31 PTY sing 379 n n C3 HC32 PTY sing 380 n n O4 C30 PTY sing 381 n n C5 C6 PTY sing 382 n n C5 O14 PTY sing 383 n n C5 HC51 PTY sing 384 n n C5 HC52 PTY sing 385 n n C6 O7 PTY sing 386 n n C6 HC6 PTY sing 387 n n O7 C8 PTY sing 388 n n C8 O10 PTY doub 389 n n C8 C11 PTY sing 390 n n C11 C12 PTY sing 391 n n C11 H111 PTY sing 392 n n C11 H112 PTY sing 393 n n C12 C13 PTY sing 394 n n C12 H121 PTY sing 395 n n C12 H122 PTY sing 396 n n C13 C14 PTY sing 397 n n C13 H131 PTY sing 398 n n C13 H132 PTY sing 399 n n C14 C15 PTY sing 400 n n C14 H141 PTY sing 401 n n C14 H142 PTY sing 402 n n C15 C16 PTY sing 403 n n C15 H151 PTY sing 404 n n C15 H152 PTY sing 405 n n C16 C17 PTY sing 406 n n C16 H161 PTY sing 407 n n C16 H162 PTY sing 408 n n C17 C18 PTY sing 409 n n C17 H171 PTY sing 410 n n C17 H172 PTY sing 411 n n C18 C19 PTY sing 412 n n C18 H181 PTY sing 413 n n C18 H182 PTY sing 414 n n C19 C20 PTY sing 415 n n C19 H191 PTY sing 416 n n C19 H192 PTY sing 417 n n C20 C21 PTY sing 418 n n C20 H201 PTY sing 419 n n C20 H202 PTY sing 420 n n C21 C22 PTY sing 421 n n C21 H211 PTY sing 422 n n C21 H212 PTY sing 423 n n C22 C23 PTY sing 424 n n C22 H221 PTY sing 425 n n C22 H222 PTY sing 426 n n C23 C24 PTY sing 427 n n C23 H231 PTY sing 428 n n C23 H232 PTY sing 429 n n C24 C25 PTY sing 430 n n C24 H241 PTY sing 431 n n C24 H242 PTY sing 432 n n C25 C26 PTY sing 433 n n C25 H251 PTY sing 434 n n C25 H252 PTY sing 435 n n C26 C27 PTY sing 436 n n C26 H261 PTY sing 437 n n C26 H262 PTY sing 438 n n C27 C28 PTY sing 439 n n C27 H271 PTY sing 440 n n C27 H272 PTY sing 441 n n C28 C29 PTY sing 442 n n C28 H281 PTY sing 443 n n C28 H282 PTY sing 444 n n C29 H291 PTY sing 445 n n C29 H292 PTY sing 446 n n C29 H293 PTY sing 447 n n C30 C31 PTY sing 448 n n C30 O30 PTY doub 449 n n C31 C32 PTY sing 450 n n C31 H311 PTY sing 451 n n C31 H312 PTY sing 452 n n C32 C33 PTY sing 453 n n C32 H321 PTY sing 454 n n C32 H322 PTY sing 455 n n C33 C34 PTY sing 456 n n C33 H331 PTY sing 457 n n C33 H332 PTY sing 458 n n C34 C35 PTY sing 459 n n C34 H341 PTY sing 460 n n C34 H342 PTY sing 461 n n C35 C36 PTY sing 462 n n C35 H351 PTY sing 463 n n C35 H352 PTY sing 464 n n C36 C37 PTY sing 465 n n C36 H361 PTY sing 466 n n C36 H362 PTY sing 467 n n C37 C38 PTY sing 468 n n C37 H371 PTY sing 469 n n C37 H372 PTY sing 470 n n C38 C39 PTY sing 471 n n C38 H381 PTY sing 472 n n C38 H382 PTY sing 473 n n C39 C40 PTY sing 474 n n C39 H391 PTY sing 475 n n C39 H392 PTY sing 476 n n C40 C41 PTY sing 477 n n C40 H401 PTY sing 478 n n C40 H402 PTY sing 479 n n C41 C42 PTY sing 480 n n C41 H411 PTY sing 481 n n C41 H412 PTY sing 482 n n C42 C43 PTY sing 483 n n C42 H421 PTY sing 484 n n C42 H422 PTY sing 485 n n C43 C44 PTY sing 486 n n C43 H431 PTY sing 487 n n C43 H432 PTY sing 488 n n C44 H441 PTY sing 489 n n C44 H442 PTY sing 490 n n C44 H443 PTY sing 491 n n P1 O11 PTY sing 492 n n P1 O12 PTY sing 493 n n P1 O13 PTY doub 494 n n P1 O14 PTY sing 495 n n O12 H12O PTY sing 496 n n N1 HN11 PTY sing 497 n n N1 HN12 PTY sing 498 n n # _atom_sites.entry_id 4YCN _atom_sites.fract_transf_matrix[1][1] 0.013978 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1001 1001 NA NA . C 3 SO4 A 1 1002 1007 SO4 SO4 . D 3 SO4 A 1 1003 1008 SO4 SO4 . E 4 7BL A 1 1004 2 7BL 7BL . F 5 PTY A 1 1005 1012 PTY PTY . G 5 PTY A 1 1006 1013 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . F 5 64.34 -17.253 63.728 1 114.25 ? C1 PTY 1005 A 1 HETATM 2 C C2 PTY . . . F 5 68.1 -20.242 56.897 1 126.24 ? C2 PTY 1005 A 1 HETATM 3 C C3 PTY . . . F 5 66.553 -20.124 57.158 1 83.09 ? C3 PTY 1005 A 1 HETATM 4 O O4 PTY . . . F 5 65.015 -18.233 64.614 1 114.43 ? O4 PTY 1005 A 1 HETATM 5 C C5 PTY . . . F 5 65.265 -17.783 61.363 1 210.56 ? C5 PTY 1005 A 1 HETATM 6 C C6 PTY . . . F 5 65.184 -16.699 62.495 1 172.8 ? C6 PTY 1005 A 1 HETATM 7 O O7 PTY . . . F 5 66.53 -16.259 62.897 1 168.48 ? O7 PTY 1005 A 1 HETATM 8 C C8 PTY . . . F 5 66.886 -14.994 62.613 1 161.46 ? C8 PTY 1005 A 1 HETATM 9 O O10 PTY . . . F 5 67.066 -14.619 61.464 1 159.5 ? O10 PTY 1005 A 1 HETATM 10 C C11 PTY . . . F 5 67.362 -14.168 63.771 1 158.82 ? C11 PTY 1005 A 1 HETATM 11 C C30 PTY . . . F 5 64.211 -19.036 65.352 1 110.41 ? C30 PTY 1005 A 1 HETATM 12 C C31 PTY . . . F 5 63.984 -18.624 66.806 1 98.53 ? C31 PTY 1005 A 1 HETATM 13 O O30 PTY . . . F 5 63.688 -20.022 64.928 1 116.45 ? O30 PTY 1005 A 1 HETATM 14 P P1 PTY . . . F 5 66.117 -17.964 58.774 1 220.37 ? P1 PTY 1005 A 1 HETATM 15 O O11 PTY . . . F 5 66.259 -19.52 58.482 1 80.34 ? O11 PTY 1005 A 1 HETATM 16 O O12 PTY . . . F 5 64.718 -17.529 58.169 1 141.75 ? O12 PTY 1005 A 1 HETATM 17 O O13 PTY . . . F 5 67.236 -17.159 57.942 1 171.51 ? O13 PTY 1005 A 1 HETATM 18 O O14 PTY . . . F 5 66.203 -17.505 60.315 1 210.27 ? O14 PTY 1005 A 1 HETATM 19 N N1 PTY . . . F 5 68.736 -21.523 57.291 1 125.5 ? N1 PTY 1005 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #