data_4YCV # _model_server_result.job_id q0yBciry5a9D1uwyTmCPxA _model_server_result.datetime_utc '2024-11-09 01:33:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ycv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 4YCV # _exptl.entry_id 4YCV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.327 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cladosporin _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.3 _cell.angle_gamma 90 _cell.entry_id 4YCV _cell.length_a 70.632 _cell.length_b 112.098 _cell.length_c 170.795 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YCV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 442 A CYS 517 1_555 A SG CYS 465 A CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 442 B CYS 517 1_555 B SG CYS 465 B CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 442 C CYS 517 1_555 C SG CYS 465 C CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf4 D SG CYS 442 D CYS 517 1_555 D SG CYS 465 D CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 C CB CYS 442 C CYS 517 1_555 C SG CYS 465 C CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? covale ? covale2 C SG CYS 442 C CYS 517 1_555 C CB CYS 465 C CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.708 ? # _chem_comp.formula 'C16 H20 O5' _chem_comp.formula_weight 292.327 _chem_comp.id KRS _chem_comp.mon_nstd_flag . _chem_comp.name cladosporin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3R)-3-[[(2R,6S)-6-methyloxan-2-yl]methyl]-6,8-bis(oxidanyl)-3,4-dihydroisochromen-1-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 KRS sing 173 n n O4 C8 KRS doub 174 n n C1 C2 KRS doub 175 n y C1 C9 KRS sing 176 n y C8 C9 KRS sing 177 n n C8 O3 KRS sing 178 n n C2 C3 KRS sing 179 n y C9 C5 KRS doub 180 n y O3 C7 KRS sing 181 n n C3 O2 KRS sing 182 n n C3 C4 KRS doub 183 n y C5 C4 KRS sing 184 n y C5 C6 KRS sing 185 n n C6 C7 KRS sing 186 n n C7 C10 KRS sing 187 n n C10 C11 KRS sing 188 n n C11 C15 KRS sing 189 n n C11 O5 KRS sing 190 n n C15 C14 KRS sing 191 n n O5 C12 KRS sing 192 n n C14 C13 KRS sing 193 n n C12 C13 KRS sing 194 n n C12 C16 KRS sing 195 n n C4 H1 KRS sing 196 n n O2 H2 KRS sing 197 n n C2 H3 KRS sing 198 n n O1 H4 KRS sing 199 n n C7 H5 KRS sing 200 n n C6 H6 KRS sing 201 n n C6 H7 KRS sing 202 n n C10 H8 KRS sing 203 n n C10 H9 KRS sing 204 n n C11 H10 KRS sing 205 n n C12 H11 KRS sing 206 n n C16 H12 KRS sing 207 n n C16 H13 KRS sing 208 n n C16 H14 KRS sing 209 n n C13 H15 KRS sing 210 n n C13 H16 KRS sing 211 n n C14 H17 KRS sing 212 n n C14 H18 KRS sing 213 n n C15 H19 KRS sing 214 n n C15 H20 KRS sing 215 n n # _atom_sites.entry_id 4YCV _atom_sites.fract_transf_matrix[1][1] 0.014158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002317 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 KRS A 1 601 1 KRS KRS . F 2 KRS B 1 601 2 KRS KRS . G 2 KRS C 1 601 3 KRS KRS . H 2 KRS D 1 601 4 KRS KRS . I 3 HOH A 1 701 1 HOH HOH . I 3 HOH A 2 702 5 HOH HOH . I 3 HOH A 3 703 6 HOH HOH . J 3 HOH B 1 701 2 HOH HOH . K 3 HOH C 1 701 4 HOH HOH . L 3 HOH D 1 701 7 HOH HOH . L 3 HOH D 2 702 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 KRS . . . E 2 16.094 -10.628 63.336 1 36.2 ? O4 KRS 601 A 1 HETATM 2 C C8 KRS . . . E 2 15.612 -11.749 63.334 1 35.96 ? C8 KRS 601 A 1 HETATM 3 C C9 KRS . . . E 2 15.497 -12.581 64.576 1 36.43 ? C9 KRS 601 A 1 HETATM 4 C C5 KRS . . . E 2 14.703 -13.824 64.509 1 37.02 ? C5 KRS 601 A 1 HETATM 5 C C4 KRS . . . E 2 14.595 -14.612 65.648 1 37.91 ? C4 KRS 601 A 1 HETATM 6 C C3 KRS . . . E 2 15.22 -14.244 66.842 1 38.46 ? C3 KRS 601 A 1 HETATM 7 O O2 KRS . . . E 2 15.091 -15.041 67.938 1 39.24 ? O2 KRS 601 A 1 HETATM 8 C C2 KRS . . . E 2 15.98 -13.082 66.954 1 37.71 ? C2 KRS 601 A 1 HETATM 9 C C1 KRS . . . E 2 16.145 -12.233 65.866 1 37.39 ? C1 KRS 601 A 1 HETATM 10 O O1 KRS . . . E 2 16.888 -11.098 65.979 1 38.4 ? O1 KRS 601 A 1 HETATM 11 O O3 KRS . . . E 2 15.116 -12.324 62.096 1 36.13 ? O3 KRS 601 A 1 HETATM 12 C C7 KRS . . . E 2 13.865 -12.977 62.315 1 36.91 ? C7 KRS 601 A 1 HETATM 13 C C6 KRS . . . E 2 14.034 -14.208 63.208 1 37.13 ? C6 KRS 601 A 1 HETATM 14 C C10 KRS . . . E 2 13.301 -13.379 60.959 1 37.06 ? C10 KRS 601 A 1 HETATM 15 C C11 KRS . . . E 2 13.094 -12.11 60.133 1 36.5 ? C11 KRS 601 A 1 HETATM 16 O O5 KRS . . . E 2 11.973 -11.368 60.633 1 35.98 ? O5 KRS 601 A 1 HETATM 17 C C12 KRS . . . E 2 10.751 -12.105 60.582 1 35.88 ? C12 KRS 601 A 1 HETATM 18 C C16 KRS . . . E 2 9.648 -11.321 61.273 1 36.36 ? C16 KRS 601 A 1 HETATM 19 C C13 KRS . . . E 2 10.4 -12.331 59.121 1 35.66 ? C13 KRS 601 A 1 HETATM 20 C C14 KRS . . . E 2 11.515 -13.14 58.475 1 35.88 ? C14 KRS 601 A 1 HETATM 21 C C15 KRS . . . E 2 12.862 -12.452 58.665 1 36.2 ? C15 KRS 601 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #