data_4YCW # _model_server_result.job_id wwvvnculwT_IZ0iH9WWgww _model_server_result.datetime_utc '2024-11-26 16:03:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ycw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":601}' # _entry.id 4YCW # _exptl.entry_id 4YCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.195 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LYSINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.8 _cell.angle_beta 99.09 _cell.angle_gamma 109.83 _cell.entry_id 4YCW _cell.length_a 51.283 _cell.length_b 75.561 _cell.length_c 162.987 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,Q,R 1 1 E,F,G,H,M,N,O,P,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N # _chem_comp.formula 'C6 H15 N2 O2 1' _chem_comp.formula_weight 147.195 _chem_comp.id LYS _chem_comp.mon_nstd_flag y _chem_comp.name LYSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA LYS sing 237 n n N H LYS sing 238 n n N H2 LYS sing 239 n n CA C LYS sing 240 n n CA CB LYS sing 241 n n CA HA LYS sing 242 n n C O LYS doub 243 n n C OXT LYS sing 244 n n CB CG LYS sing 245 n n CB HB2 LYS sing 246 n n CB HB3 LYS sing 247 n n CG CD LYS sing 248 n n CG HG2 LYS sing 249 n n CG HG3 LYS sing 250 n n CD CE LYS sing 251 n n CD HD2 LYS sing 252 n n CD HD3 LYS sing 253 n n CE NZ LYS sing 254 n n CE HE2 LYS sing 255 n n CE HE3 LYS sing 256 n n NZ HZ1 LYS sing 257 n n NZ HZ2 LYS sing 258 n n NZ HZ3 LYS sing 259 n n OXT HXT LYS sing 260 n n # _atom_sites.entry_id 4YCW _atom_sites.fract_transf_matrix[1][1] 0.0195 _atom_sites.fract_transf_matrix[1][2] 0.007033 _atom_sites.fract_transf_matrix[1][3] 0.003643 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014069 _atom_sites.fract_transf_matrix[2][3] 0.001026 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 LYS A 1 601 600 LYS LYS . J 4 KRS A 1 602 700 KRS KRS . K 3 LYS B 1 601 600 LYS LYS . L 4 KRS B 1 602 700 KRS KRS . M 3 LYS E 1 601 600 LYS LYS . N 4 KRS E 1 602 700 KRS KRS . O 3 LYS F 1 601 600 LYS LYS . P 4 KRS F 1 602 700 KRS KRS . Q 5 HOH A 1 801 801 HOH HOH . Q 5 HOH A 2 802 802 HOH HOH . Q 5 HOH A 3 803 803 HOH HOH . R 5 HOH B 1 801 801 HOH HOH . R 5 HOH B 2 802 802 HOH HOH . R 5 HOH B 3 803 803 HOH HOH . S 5 HOH E 1 801 801 HOH HOH . S 5 HOH E 2 802 802 HOH HOH . T 5 HOH F 1 801 801 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N LYS . . . M 3 -6.411 26.528 64.337 1 36.24 ? N LYS 601 E 1 HETATM 2 C CA LYS . . . M 3 -5.697 25.287 64.061 1 38.07 ? CA LYS 601 E 1 HETATM 3 C C LYS . . . M 3 -6.286 24.122 64.848 1 43.23 ? C LYS 601 E 1 HETATM 4 O O LYS . . . M 3 -6.033 22.957 64.538 1 37.71 ? O LYS 601 E 1 HETATM 5 C CB LYS . . . M 3 -4.21 25.441 64.385 1 36.37 ? CB LYS 601 E 1 HETATM 6 C CG LYS . . . M 3 -3.49 26.468 63.528 1 34.06 ? CG LYS 601 E 1 HETATM 7 C CD LYS . . . M 3 -3.519 26.073 62.06 1 37.45 ? CD LYS 601 E 1 HETATM 8 C CE LYS . . . M 3 -2.715 27.044 61.21 1 34.45 ? CE LYS 601 E 1 HETATM 9 N NZ LYS . . . M 3 -3.289 28.417 61.234 1 30.38 1 NZ LYS 601 E 1 # _model_server_stats.io_time_ms 126 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 9 #