data_4YCW # _model_server_result.job_id 9HCcuguyLeIPyQbKxyCvZA _model_server_result.datetime_utc '2024-11-26 16:12:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ycw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":602}' # _entry.id 4YCW # _exptl.entry_id 4YCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.327 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cladosporin _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.8 _cell.angle_beta 99.09 _cell.angle_gamma 109.83 _cell.entry_id 4YCW _cell.length_a 51.283 _cell.length_b 75.561 _cell.length_c 162.987 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,Q,R 1 1 E,F,G,H,M,N,O,P,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 L N N ? 4 N N N ? 4 P N N # _chem_comp.formula 'C16 H20 O5' _chem_comp.formula_weight 292.327 _chem_comp.id KRS _chem_comp.mon_nstd_flag . _chem_comp.name cladosporin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3R)-3-[[(2R,6S)-6-methyloxan-2-yl]methyl]-6,8-bis(oxidanyl)-3,4-dihydroisochromen-1-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 KRS sing 173 n n O4 C8 KRS doub 174 n n C1 C2 KRS doub 175 n y C1 C9 KRS sing 176 n y C8 C9 KRS sing 177 n n C8 O3 KRS sing 178 n n C2 C3 KRS sing 179 n y C9 C5 KRS doub 180 n y O3 C7 KRS sing 181 n n C3 O2 KRS sing 182 n n C3 C4 KRS doub 183 n y C5 C4 KRS sing 184 n y C5 C6 KRS sing 185 n n C6 C7 KRS sing 186 n n C7 C10 KRS sing 187 n n C10 C11 KRS sing 188 n n C11 C15 KRS sing 189 n n C11 O5 KRS sing 190 n n C15 C14 KRS sing 191 n n O5 C12 KRS sing 192 n n C14 C13 KRS sing 193 n n C12 C13 KRS sing 194 n n C12 C16 KRS sing 195 n n C4 H1 KRS sing 196 n n O2 H2 KRS sing 197 n n C2 H3 KRS sing 198 n n O1 H4 KRS sing 199 n n C7 H5 KRS sing 200 n n C6 H6 KRS sing 201 n n C6 H7 KRS sing 202 n n C10 H8 KRS sing 203 n n C10 H9 KRS sing 204 n n C11 H10 KRS sing 205 n n C12 H11 KRS sing 206 n n C16 H12 KRS sing 207 n n C16 H13 KRS sing 208 n n C16 H14 KRS sing 209 n n C13 H15 KRS sing 210 n n C13 H16 KRS sing 211 n n C14 H17 KRS sing 212 n n C14 H18 KRS sing 213 n n C15 H19 KRS sing 214 n n C15 H20 KRS sing 215 n n # _atom_sites.entry_id 4YCW _atom_sites.fract_transf_matrix[1][1] 0.0195 _atom_sites.fract_transf_matrix[1][2] 0.007033 _atom_sites.fract_transf_matrix[1][3] 0.003643 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014069 _atom_sites.fract_transf_matrix[2][3] 0.001026 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 LYS A 1 601 600 LYS LYS . J 4 KRS A 1 602 700 KRS KRS . K 3 LYS B 1 601 600 LYS LYS . L 4 KRS B 1 602 700 KRS KRS . M 3 LYS E 1 601 600 LYS LYS . N 4 KRS E 1 602 700 KRS KRS . O 3 LYS F 1 601 600 LYS LYS . P 4 KRS F 1 602 700 KRS KRS . Q 5 HOH A 1 801 801 HOH HOH . Q 5 HOH A 2 802 802 HOH HOH . Q 5 HOH A 3 803 803 HOH HOH . R 5 HOH B 1 801 801 HOH HOH . R 5 HOH B 2 802 802 HOH HOH . R 5 HOH B 3 803 803 HOH HOH . S 5 HOH E 1 801 801 HOH HOH . S 5 HOH E 2 802 802 HOH HOH . T 5 HOH F 1 801 801 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 KRS . . . N 4 -6.099 17.145 71.797 1 48.98 ? O4 KRS 602 E 1 HETATM 2 C C8 KRS . . . N 4 -6.818 17.377 70.84 1 49.05 ? C8 KRS 602 E 1 HETATM 3 C C9 KRS . . . N 4 -8.29 17.594 71.003 1 52.5 ? C9 KRS 602 E 1 HETATM 4 C C5 KRS . . . N 4 -9.067 17.973 69.805 1 50.05 ? C5 KRS 602 E 1 HETATM 5 C C4 KRS . . . N 4 -10.435 18.18 69.932 1 54.22 ? C4 KRS 602 E 1 HETATM 6 C C3 KRS . . . N 4 -11.07 18.039 71.167 1 56.54 ? C3 KRS 602 E 1 HETATM 7 O O2 KRS . . . N 4 -12.413 18.252 71.247 1 58.25 ? O2 KRS 602 E 1 HETATM 8 C C2 KRS . . . N 4 -10.371 17.685 72.323 1 54.97 ? C2 KRS 602 E 1 HETATM 9 C C1 KRS . . . N 4 -9 17.455 72.296 1 53.02 ? C1 KRS 602 E 1 HETATM 10 O O1 KRS . . . N 4 -8.326 17.11 73.428 1 44.06 ? O1 KRS 602 E 1 HETATM 11 O O3 KRS . . . N 4 -6.247 17.448 69.501 1 55.23 ? O3 KRS 602 E 1 HETATM 12 C C7 KRS . . . N 4 -6.874 18.435 68.673 1 52.53 ? C7 KRS 602 E 1 HETATM 13 C C6 KRS . . . N 4 -8.359 18.119 68.474 1 48.62 ? C6 KRS 602 E 1 HETATM 14 C C10 KRS . . . N 4 -6.178 18.479 67.318 1 54.38 ? C10 KRS 602 E 1 HETATM 15 C C11 KRS . . . N 4 -4.688 18.765 67.479 1 54.1 ? C11 KRS 602 E 1 HETATM 16 O O5 KRS . . . N 4 -4.492 19.9 68.323 1 60.13 ? O5 KRS 602 E 1 HETATM 17 C C12 KRS . . . N 4 -5.117 21.081 67.822 1 62.55 ? C12 KRS 602 E 1 HETATM 18 C C16 KRS . . . N 4 -4.962 22.207 68.836 1 66.17 ? C16 KRS 602 E 1 HETATM 19 C C13 KRS . . . N 4 -4.493 21.462 66.484 1 62.79 ? C13 KRS 602 E 1 HETATM 20 C C14 KRS . . . N 4 -4.593 20.309 65.494 1 62.72 ? C14 KRS 602 E 1 HETATM 21 C C15 KRS . . . N 4 -4.064 19.02 66.111 1 56.32 ? C15 KRS 602 E 1 # _model_server_stats.io_time_ms 155 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 66 _model_server_stats.query_time_ms 1111 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #