data_4YCY # _model_server_result.job_id IAJc79h3NLw3py96qb7xUg _model_server_result.datetime_utc '2024-10-12 14:28:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ycy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4YCY # _exptl.entry_id 4YCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.75 _cell.angle_gamma 90 _cell.entry_id 4YCY _cell.length_a 45.564 _cell.length_b 72.903 _cell.length_c 52.71 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.026 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 265 n n C1 C2 PEG sing 266 n n C1 H11 PEG sing 267 n n C1 H12 PEG sing 268 n n O1 HO1 PEG sing 269 n n C2 O2 PEG sing 270 n n C2 H21 PEG sing 271 n n C2 H22 PEG sing 272 n n O2 C3 PEG sing 273 n n C3 C4 PEG sing 274 n n C3 H31 PEG sing 275 n n C3 H32 PEG sing 276 n n C4 O4 PEG sing 277 n n C4 H41 PEG sing 278 n n C4 H42 PEG sing 279 n n O4 HO4 PEG sing 280 n n # _atom_sites.entry_id 4YCY _atom_sites.fract_transf_matrix[1][1] 0.021947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00745 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4AO A 1 401 401 4AO 4AO . C 3 GOL A 1 402 402 GOL GOL . D 3 GOL A 1 403 403 GOL GOL . E 4 PEG A 1 404 404 PEG PEG . F 5 HOH A 1 512 512 HOH HOH . F 5 HOH A 2 569 569 HOH HOH . F 5 HOH A 3 582 582 HOH HOH . F 5 HOH A 4 588 588 HOH HOH . F 5 HOH A 5 589 589 HOH HOH . F 5 HOH A 6 612 612 HOH HOH . F 5 HOH A 7 621 621 HOH HOH . F 5 HOH A 8 638 638 HOH HOH . F 5 HOH A 9 690 690 HOH HOH . F 5 HOH A 10 731 731 HOH HOH . F 5 HOH A 11 733 733 HOH HOH . F 5 HOH A 12 738 738 HOH HOH . F 5 HOH A 13 744 744 HOH HOH . F 5 HOH A 14 747 747 HOH HOH . F 5 HOH A 15 748 748 HOH HOH . F 5 HOH A 16 760 760 HOH HOH . F 5 HOH A 17 775 775 HOH HOH . F 5 HOH A 18 798 798 HOH HOH . F 5 HOH A 19 807 807 HOH HOH . F 5 HOH A 20 813 813 HOH HOH . F 5 HOH A 21 817 817 HOH HOH . F 5 HOH A 22 819 819 HOH HOH . F 5 HOH A 23 830 830 HOH HOH . F 5 HOH A 24 864 864 HOH HOH . F 5 HOH A 25 867 867 HOH HOH . F 5 HOH A 26 877 877 HOH HOH . F 5 HOH A 27 895 895 HOH HOH . F 5 HOH A 28 897 897 HOH HOH . F 5 HOH A 29 925 925 HOH HOH . F 5 HOH A 30 932 932 HOH HOH . F 5 HOH A 31 948 948 HOH HOH . F 5 HOH A 32 955 955 HOH HOH . F 5 HOH A 33 957 957 HOH HOH . F 5 HOH A 34 970 970 HOH HOH . F 5 HOH A 35 971 971 HOH HOH . F 5 HOH A 36 978 978 HOH HOH . F 5 HOH A 37 992 992 HOH HOH . F 5 HOH A 38 996 996 HOH HOH . F 5 HOH A 39 1010 1010 HOH HOH . F 5 HOH A 40 1014 1014 HOH HOH . F 5 HOH A 41 1026 1026 HOH HOH . F 5 HOH A 42 1038 1038 HOH HOH . F 5 HOH A 43 1070 1070 HOH HOH . F 5 HOH A 44 1071 1071 HOH HOH . F 5 HOH A 45 1081 1081 HOH HOH . F 5 HOH A 46 1089 1089 HOH HOH . F 5 HOH A 47 1091 1091 HOH HOH . F 5 HOH A 48 1107 1107 HOH HOH . F 5 HOH A 49 1109 1109 HOH HOH . F 5 HOH A 50 1110 1110 HOH HOH . F 5 HOH A 51 1111 1111 HOH HOH . F 5 HOH A 52 1115 1115 HOH HOH . F 5 HOH A 53 1124 1124 HOH HOH . F 5 HOH A 54 1125 1125 HOH HOH . F 5 HOH A 55 1140 1140 HOH HOH . F 5 HOH A 56 1141 1141 HOH HOH . F 5 HOH A 57 1149 1149 HOH HOH . F 5 HOH A 58 1161 1161 HOH HOH . F 5 HOH A 59 1167 1167 HOH HOH . F 5 HOH A 60 1173 1173 HOH HOH . F 5 HOH A 61 1180 1180 HOH HOH . F 5 HOH A 62 1190 1190 HOH HOH . F 5 HOH A 63 1207 1207 HOH HOH . F 5 HOH A 64 1210 1210 HOH HOH . F 5 HOH A 65 1226 1226 HOH HOH . F 5 HOH A 66 1232 1232 HOH HOH . F 5 HOH A 67 1236 1236 HOH HOH . F 5 HOH A 68 1237 1237 HOH HOH . F 5 HOH A 69 1244 1244 HOH HOH . F 5 HOH A 70 1282 1282 HOH HOH . F 5 HOH A 71 1286 1286 HOH HOH . F 5 HOH A 72 1292 1292 HOH HOH . F 5 HOH A 73 1304 1304 HOH HOH . F 5 HOH A 74 1316 1316 HOH HOH . F 5 HOH A 75 1340 1340 HOH HOH . F 5 HOH A 76 1349 1349 HOH HOH . F 5 HOH A 77 1365 1365 HOH HOH . F 5 HOH A 78 1369 1369 HOH HOH . F 5 HOH A 79 1384 1384 HOH HOH . F 5 HOH A 80 1401 1401 HOH HOH . F 5 HOH A 81 1422 1422 HOH HOH . F 5 HOH A 82 1448 1448 HOH HOH . F 5 HOH A 83 1461 1461 HOH HOH . F 5 HOH A 84 1463 1463 HOH HOH . F 5 HOH A 85 1475 1475 HOH HOH . F 5 HOH A 86 1515 1515 HOH HOH . F 5 HOH A 87 1535 1535 HOH HOH . F 5 HOH A 88 1538 1538 HOH HOH . F 5 HOH A 89 1547 1547 HOH HOH . F 5 HOH A 90 1555 1555 HOH HOH . F 5 HOH A 91 1562 1562 HOH HOH . F 5 HOH A 92 1566 1566 HOH HOH . F 5 HOH A 93 1572 1572 HOH HOH . F 5 HOH A 94 1581 1581 HOH HOH . F 5 HOH A 95 1593 1593 HOH HOH . F 5 HOH A 96 1594 1594 HOH HOH . F 5 HOH A 97 1612 1612 HOH HOH . F 5 HOH A 98 1627 1627 HOH HOH . F 5 HOH A 99 1637 1637 HOH HOH . F 5 HOH A 100 1638 1638 HOH HOH . F 5 HOH A 101 1640 1640 HOH HOH . F 5 HOH A 102 1641 1641 HOH HOH . F 5 HOH A 103 1645 1645 HOH HOH . F 5 HOH A 104 1651 1651 HOH HOH . F 5 HOH A 105 1659 1659 HOH HOH . F 5 HOH A 106 1684 1684 HOH HOH . F 5 HOH A 107 1689 1689 HOH HOH . F 5 HOH A 108 1694 1694 HOH HOH . F 5 HOH A 109 1699 1699 HOH HOH . F 5 HOH A 110 1716 1716 HOH HOH . F 5 HOH A 111 1718 1718 HOH HOH . F 5 HOH A 112 1731 1731 HOH HOH . F 5 HOH A 113 1734 1734 HOH HOH . F 5 HOH A 114 1739 1739 HOH HOH . F 5 HOH A 115 1757 1757 HOH HOH . F 5 HOH A 116 1764 1764 HOH HOH . F 5 HOH A 117 1772 1772 HOH HOH . F 5 HOH A 118 1776 1776 HOH HOH . F 5 HOH A 119 1782 1782 HOH HOH . F 5 HOH A 120 1784 1784 HOH HOH . F 5 HOH A 121 1791 1791 HOH HOH . F 5 HOH A 122 1851 1851 HOH HOH . F 5 HOH A 123 1853 1853 HOH HOH . F 5 HOH A 124 1856 1856 HOH HOH . F 5 HOH A 125 1894 1894 HOH HOH . F 5 HOH A 126 1897 1897 HOH HOH . F 5 HOH A 127 1977 1977 HOH HOH . F 5 HOH A 128 1980 1980 HOH HOH . F 5 HOH A 129 1987 1987 HOH HOH . F 5 HOH A 130 2057 2057 HOH HOH . F 5 HOH A 131 2060 2060 HOH HOH . F 5 HOH A 132 2093 2093 HOH HOH . F 5 HOH A 133 2102 2102 HOH HOH . F 5 HOH A 134 2107 2107 HOH HOH . F 5 HOH A 135 2110 2110 HOH HOH . F 5 HOH A 136 2125 2125 HOH HOH . F 5 HOH A 137 2137 2137 HOH HOH . F 5 HOH A 138 2151 2151 HOH HOH . F 5 HOH A 139 2159 2159 HOH HOH . F 5 HOH A 140 2162 2162 HOH HOH . F 5 HOH A 141 2163 2163 HOH HOH . F 5 HOH A 142 2166 2166 HOH HOH . F 5 HOH A 143 2167 2167 HOH HOH . F 5 HOH A 144 2180 2180 HOH HOH . F 5 HOH A 145 2183 2183 HOH HOH . F 5 HOH A 146 2185 2185 HOH HOH . F 5 HOH A 147 2198 2198 HOH HOH . F 5 HOH A 148 2216 2216 HOH HOH . F 5 HOH A 149 2227 2227 HOH HOH . F 5 HOH A 150 2307 2307 HOH HOH . F 5 HOH A 151 2339 2339 HOH HOH . F 5 HOH A 152 2344 2344 HOH HOH . F 5 HOH A 153 2357 2357 HOH HOH . F 5 HOH A 154 2364 2364 HOH HOH . F 5 HOH A 155 2404 2404 HOH HOH . F 5 HOH A 156 2451 2451 HOH HOH . F 5 HOH A 157 2483 2483 HOH HOH . F 5 HOH A 158 2533 2533 HOH HOH . F 5 HOH A 159 2540 2540 HOH HOH . F 5 HOH A 160 2611 2611 HOH HOH . F 5 HOH A 161 2660 2660 HOH HOH . F 5 HOH A 162 2679 2679 HOH HOH . F 5 HOH A 163 2698 2698 HOH HOH . F 5 HOH A 164 2756 2756 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . E 4 -12.488 5.856 2.092 1 39.02 ? C1 PEG 404 A 1 HETATM 2 O O1 PEG . . . E 4 -11.339 6.678 2.015 1 43.75 ? O1 PEG 404 A 1 HETATM 3 C C2 PEG . . . E 4 -12.457 4.766 1.07 1 36.67 ? C2 PEG 404 A 1 HETATM 4 O O2 PEG . . . E 4 -11.275 3.994 1.228 1 31.48 ? O2 PEG 404 A 1 HETATM 5 C C3 PEG . . . E 4 -11.218 2.886 0.339 1 31.66 ? C3 PEG 404 A 1 HETATM 6 C C4 PEG . . . E 4 -10.249 1.866 0.851 1 37.56 ? C4 PEG 404 A 1 HETATM 7 O O4 PEG . . . E 4 -8.959 2.411 1.045 1 44.95 ? O4 PEG 404 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 7 #