data_4YDM # _model_server_result.job_id uS8OZJKZVKXtMxvo7scl2w _model_server_result.datetime_utc '2024-11-01 03:42:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ydm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4YDM # _exptl.entry_id 4YDM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.131 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,6-dichloro-4-[5-(3-hydroxyphenyl)-1,3,4-oxadiazol-2-yl]phenol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YDM _cell.length_a 42.709 _cell.length_b 85.42 _cell.length_c 63.537 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 14 A VAL 14 1_555 A N 4AK 15 A 4AK 15 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.503 ? covale ? covale2 A C VAL 14 A VAL 14 1_555 A N 4AK 15 A 4AK 15 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.509 ? covale ? covale3 A C 4AK 15 A 4AK 15 1_555 A N VAL 16 A VAL 16 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C 4AK 15 A 4AK 15 1_555 A N VAL 16 A VAL 16 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C VAL 14 B VAL 14 1_555 B N 4AK 15 B 4AK 15 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.318 ? covale ? covale6 B C VAL 14 B VAL 14 1_555 B N 4AK 15 B 4AK 15 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale7 B C 4AK 15 B 4AK 15 1_555 B N VAL 16 B VAL 16 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.282 ? covale ? covale8 B C 4AK 15 B 4AK 15 1_555 B N VAL 16 B VAL 16 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.247 ? # _chem_comp.formula 'C14 H8 Cl2 N2 O3' _chem_comp.formula_weight 323.131 _chem_comp.id 4AJ _chem_comp.mon_nstd_flag . _chem_comp.name 2,6-dichloro-4-[5-(3-hydroxyphenyl)-1,3,4-oxadiazol-2-yl]phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAB CAS 4AJ sing 1 n n CLAC CAO 4AJ sing 2 n n CLAD CAP 4AJ sing 3 n n CAS CAO 4AJ doub 4 n y CAS CAP 4AJ sing 5 n y CAO CAI 4AJ sing 6 n y CAP CAJ 4AJ doub 7 n y CAI CAR 4AJ doub 8 n y CAJ CAR 4AJ sing 9 n y CAR CAU 4AJ sing 10 n n CAU NAL 4AJ doub 11 n y CAU OAM 4AJ sing 12 n y NAL NAK 4AJ sing 13 n y OAM CAT 4AJ sing 14 n y NAK CAT 4AJ doub 15 n y CAT CAQ 4AJ sing 16 n n CAH CAQ 4AJ doub 17 n y CAH CAN 4AJ sing 18 n y CAQ CAG 4AJ sing 19 n y OAA CAN 4AJ sing 20 n n CAN CAF 4AJ doub 21 n y CAG CAE 4AJ doub 22 n y CAF CAE 4AJ sing 23 n y CAH H1 4AJ sing 24 n n OAA H2 4AJ sing 25 n n CAF H3 4AJ sing 26 n n CAE H4 4AJ sing 27 n n CAG H5 4AJ sing 28 n n CAI H6 4AJ sing 29 n n OAB H7 4AJ sing 30 n n CAJ H8 4AJ sing 31 n n # _atom_sites.entry_id 4YDM _atom_sites.fract_transf_matrix[1][1] 0.023414 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011707 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4AJ A 1 201 5 4AJ DRG . D 2 4AJ B 1 201 6 4AJ DRG . E 3 HOH A 1 301 498 HOH HOH . E 3 HOH A 2 302 118 HOH HOH . E 3 HOH A 3 303 311 HOH HOH . E 3 HOH A 4 304 26 HOH HOH . E 3 HOH A 5 305 67 HOH HOH . E 3 HOH A 6 306 500 HOH HOH . E 3 HOH A 7 307 54 HOH HOH . E 3 HOH A 8 308 137 HOH HOH . E 3 HOH A 9 309 488 HOH HOH . E 3 HOH A 10 310 158 HOH HOH . E 3 HOH A 11 311 174 HOH HOH . E 3 HOH A 12 312 247 HOH HOH . E 3 HOH A 13 313 30 HOH HOH . E 3 HOH A 14 314 62 HOH HOH . E 3 HOH A 15 315 5 HOH HOH . E 3 HOH A 16 316 61 HOH HOH . E 3 HOH A 17 317 107 HOH HOH . E 3 HOH A 18 318 7 HOH HOH . E 3 HOH A 19 319 120 HOH HOH . E 3 HOH A 20 320 24 HOH HOH . E 3 HOH A 21 321 102 HOH HOH . E 3 HOH A 22 322 59 HOH HOH . E 3 HOH A 23 323 190 HOH HOH . E 3 HOH A 24 324 23 HOH HOH . E 3 HOH A 25 325 143 HOH HOH . E 3 HOH A 26 326 14 HOH HOH . E 3 HOH A 27 327 9 HOH HOH . E 3 HOH A 28 328 444 HOH HOH . E 3 HOH A 29 329 28 HOH HOH . E 3 HOH A 30 330 22 HOH HOH . E 3 HOH A 31 331 494 HOH HOH . E 3 HOH A 32 332 31 HOH HOH . E 3 HOH A 33 333 42 HOH HOH . E 3 HOH A 34 334 33 HOH HOH . E 3 HOH A 35 335 69 HOH HOH . E 3 HOH A 36 336 244 HOH HOH . E 3 HOH A 37 337 76 HOH HOH . E 3 HOH A 38 338 220 HOH HOH . E 3 HOH A 39 339 83 HOH HOH . E 3 HOH A 40 340 10 HOH HOH . E 3 HOH A 41 341 11 HOH HOH . E 3 HOH A 42 342 8 HOH HOH . E 3 HOH A 43 343 37 HOH HOH . E 3 HOH A 44 344 12 HOH HOH . E 3 HOH A 45 345 134 HOH HOH . E 3 HOH A 46 346 41 HOH HOH . E 3 HOH A 47 347 1 HOH HOH . E 3 HOH A 48 348 57 HOH HOH . E 3 HOH A 49 349 52 HOH HOH . E 3 HOH A 50 350 489 HOH HOH . E 3 HOH A 51 351 64 HOH HOH . E 3 HOH A 52 352 18 HOH HOH . E 3 HOH A 53 353 25 HOH HOH . E 3 HOH A 54 354 73 HOH HOH . E 3 HOH A 55 355 128 HOH HOH . E 3 HOH A 56 356 239 HOH HOH . E 3 HOH A 57 357 117 HOH HOH . E 3 HOH A 58 358 35 HOH HOH . E 3 HOH A 59 359 16 HOH HOH . E 3 HOH A 60 360 284 HOH HOH . E 3 HOH A 61 361 48 HOH HOH . E 3 HOH A 62 362 39 HOH HOH . E 3 HOH A 63 363 27 HOH HOH . E 3 HOH A 64 364 44 HOH HOH . E 3 HOH A 65 365 250 HOH HOH . E 3 HOH A 66 366 131 HOH HOH . E 3 HOH A 67 367 71 HOH HOH . E 3 HOH A 68 368 175 HOH HOH . E 3 HOH A 69 369 383 HOH HOH . E 3 HOH A 70 370 280 HOH HOH . E 3 HOH A 71 371 330 HOH HOH . E 3 HOH A 72 372 88 HOH HOH . E 3 HOH A 73 373 339 HOH HOH . E 3 HOH A 74 374 101 HOH HOH . E 3 HOH A 75 375 211 HOH HOH . E 3 HOH A 76 376 231 HOH HOH . E 3 HOH A 77 377 495 HOH HOH . E 3 HOH A 78 378 162 HOH HOH . E 3 HOH A 79 379 84 HOH HOH . E 3 HOH A 80 380 225 HOH HOH . E 3 HOH A 81 381 369 HOH HOH . E 3 HOH A 82 382 92 HOH HOH . E 3 HOH A 83 383 55 HOH HOH . E 3 HOH A 84 384 116 HOH HOH . E 3 HOH A 85 385 256 HOH HOH . E 3 HOH A 86 386 443 HOH HOH . E 3 HOH A 87 387 445 HOH HOH . E 3 HOH A 88 388 395 HOH HOH . E 3 HOH A 89 389 430 HOH HOH . E 3 HOH A 90 390 315 HOH HOH . E 3 HOH A 91 391 198 HOH HOH . E 3 HOH A 92 392 270 HOH HOH . E 3 HOH A 93 393 111 HOH HOH . E 3 HOH A 94 394 155 HOH HOH . E 3 HOH A 95 395 453 HOH HOH . E 3 HOH A 96 396 271 HOH HOH . E 3 HOH A 97 397 497 HOH HOH . F 3 HOH B 1 301 262 HOH HOH . F 3 HOH B 2 302 135 HOH HOH . F 3 HOH B 3 303 93 HOH HOH . F 3 HOH B 4 304 95 HOH HOH . F 3 HOH B 5 305 499 HOH HOH . F 3 HOH B 6 306 114 HOH HOH . F 3 HOH B 7 307 65 HOH HOH . F 3 HOH B 8 308 235 HOH HOH . F 3 HOH B 9 309 164 HOH HOH . F 3 HOH B 10 310 43 HOH HOH . F 3 HOH B 11 311 297 HOH HOH . F 3 HOH B 12 312 47 HOH HOH . F 3 HOH B 13 313 60 HOH HOH . F 3 HOH B 14 314 75 HOH HOH . F 3 HOH B 15 315 2 HOH HOH . F 3 HOH B 16 316 6 HOH HOH . F 3 HOH B 17 317 96 HOH HOH . F 3 HOH B 18 318 20 HOH HOH . F 3 HOH B 19 319 103 HOH HOH . F 3 HOH B 20 320 207 HOH HOH . F 3 HOH B 21 321 56 HOH HOH . F 3 HOH B 22 322 178 HOH HOH . F 3 HOH B 23 323 254 HOH HOH . F 3 HOH B 24 324 46 HOH HOH . F 3 HOH B 25 325 51 HOH HOH . F 3 HOH B 26 326 21 HOH HOH . F 3 HOH B 27 327 3 HOH HOH . F 3 HOH B 28 328 173 HOH HOH . F 3 HOH B 29 329 49 HOH HOH . F 3 HOH B 30 330 82 HOH HOH . F 3 HOH B 31 331 13 HOH HOH . F 3 HOH B 32 332 58 HOH HOH . F 3 HOH B 33 333 216 HOH HOH . F 3 HOH B 34 334 90 HOH HOH . F 3 HOH B 35 335 490 HOH HOH . F 3 HOH B 36 336 191 HOH HOH . F 3 HOH B 37 337 77 HOH HOH . F 3 HOH B 38 338 4 HOH HOH . F 3 HOH B 39 339 45 HOH HOH . F 3 HOH B 40 340 40 HOH HOH . F 3 HOH B 41 341 63 HOH HOH . F 3 HOH B 42 342 133 HOH HOH . F 3 HOH B 43 343 15 HOH HOH . F 3 HOH B 44 344 17 HOH HOH . F 3 HOH B 45 345 72 HOH HOH . F 3 HOH B 46 346 145 HOH HOH . F 3 HOH B 47 347 68 HOH HOH . F 3 HOH B 48 348 36 HOH HOH . F 3 HOH B 49 349 267 HOH HOH . F 3 HOH B 50 350 492 HOH HOH . F 3 HOH B 51 351 34 HOH HOH . F 3 HOH B 52 352 208 HOH HOH . F 3 HOH B 53 353 89 HOH HOH . F 3 HOH B 54 354 493 HOH HOH . F 3 HOH B 55 355 70 HOH HOH . F 3 HOH B 56 356 38 HOH HOH . F 3 HOH B 57 357 19 HOH HOH . F 3 HOH B 58 358 142 HOH HOH . F 3 HOH B 59 359 121 HOH HOH . F 3 HOH B 60 360 195 HOH HOH . F 3 HOH B 61 361 81 HOH HOH . F 3 HOH B 62 362 153 HOH HOH . F 3 HOH B 63 363 318 HOH HOH . F 3 HOH B 64 364 168 HOH HOH . F 3 HOH B 65 365 385 HOH HOH . F 3 HOH B 66 366 80 HOH HOH . F 3 HOH B 67 367 491 HOH HOH . F 3 HOH B 68 368 91 HOH HOH . F 3 HOH B 69 369 159 HOH HOH . F 3 HOH B 70 370 321 HOH HOH . F 3 HOH B 71 371 136 HOH HOH . F 3 HOH B 72 372 165 HOH HOH . F 3 HOH B 73 373 53 HOH HOH . F 3 HOH B 74 374 66 HOH HOH . F 3 HOH B 75 375 74 HOH HOH . F 3 HOH B 76 376 126 HOH HOH . F 3 HOH B 77 377 204 HOH HOH . F 3 HOH B 78 378 105 HOH HOH . F 3 HOH B 79 379 32 HOH HOH . F 3 HOH B 80 380 125 HOH HOH . F 3 HOH B 81 381 236 HOH HOH . F 3 HOH B 82 382 381 HOH HOH . F 3 HOH B 83 383 99 HOH HOH . F 3 HOH B 84 384 441 HOH HOH . F 3 HOH B 85 385 189 HOH HOH . F 3 HOH B 86 386 129 HOH HOH . F 3 HOH B 87 387 289 HOH HOH . F 3 HOH B 88 388 181 HOH HOH . F 3 HOH B 89 389 115 HOH HOH . F 3 HOH B 90 390 176 HOH HOH . F 3 HOH B 91 391 185 HOH HOH . F 3 HOH B 92 392 98 HOH HOH . F 3 HOH B 93 393 457 HOH HOH . F 3 HOH B 94 394 160 HOH HOH . F 3 HOH B 95 395 112 HOH HOH . F 3 HOH B 96 396 447 HOH HOH . F 3 HOH B 97 397 481 HOH HOH . F 3 HOH B 98 398 152 HOH HOH . F 3 HOH B 99 399 188 HOH HOH . F 3 HOH B 100 400 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH 4AJ . . . D 2 1.097 1.173 -28.475 0.5 23.41 ? CAH 4AJ 201 B 1 HETATM 2 C CAN 4AJ . . . D 2 1.457 1.6 -29.739 0.5 27.41 ? CAN 4AJ 201 B 1 HETATM 3 O OAA 4AJ . . . D 2 2.375 2.571 -29.881 0.5 30.67 ? OAA 4AJ 201 B 1 HETATM 4 C CAF 4AJ . . . D 2 0.873 1.027 -30.863 0.5 29.85 ? CAF 4AJ 201 B 1 HETATM 5 C CAE 4AJ . . . D 2 0 0 -30.714 0.5 28.88 ? CAE 4AJ 201 B 1 HETATM 6 C CAG 4AJ . . . D 2 -0.427 -0.428 -29.448 0.5 23.59 ? CAG 4AJ 201 B 1 HETATM 7 C CAQ 4AJ . . . D 2 0.163 0.156 -28.33 0.5 26.81 ? CAQ 4AJ 201 B 1 HETATM 8 C CAT 4AJ . . . D 2 -0.161 -0.252 -27.114 0.5 21.72 ? CAT 4AJ 201 B 1 HETATM 9 O OAM 4AJ . . . D 2 0.263 0.338 -26 0.5 19.62 ? OAM 4AJ 201 B 1 HETATM 10 N NAK 4AJ . . . D 2 -0.93 -1.29 -26.829 0.5 27.88 ? NAK 4AJ 201 B 1 HETATM 11 N NAL 4AJ . . . D 2 -1.012 -1.379 -25.643 0.5 27.75 ? NAL 4AJ 201 B 1 HETATM 12 C CAU 4AJ . . . D 2 -0.309 -0.409 -25.081 0.5 19.09 ? CAU 4AJ 201 B 1 HETATM 13 C CAR 4AJ . . . D 2 -0.202 -0.239 -23.781 0.5 19.15 ? CAR 4AJ 201 B 1 HETATM 14 C CAI 4AJ . . . D 2 -0.333 -1.335 -22.925 0.5 21.24 ? CAI 4AJ 201 B 1 HETATM 15 C CAO 4AJ . . . D 2 -0.217 -1.163 -21.554 0.5 25.52 ? CAO 4AJ 201 B 1 HETATM 16 CL CLAC 4AJ . . . D 2 -0.38 -2.49 -20.492 0.5 29.77 ? CLAC 4AJ 201 B 1 HETATM 17 C CAS 4AJ . . . D 2 0 0 -21.065 0.5 17.89 ? CAS 4AJ 201 B 1 HETATM 18 O OAB 4AJ . . . D 2 0.142 0.282 -19.72 0.5 22.6 ? OAB 4AJ 201 B 1 HETATM 19 C CAP 4AJ . . . D 2 0.152 1.186 -21.911 0.5 14.44 ? CAP 4AJ 201 B 1 HETATM 20 CL CLAD 4AJ . . . D 2 0.449 2.748 -21.256 0.5 14.75 ? CLAD 4AJ 201 B 1 HETATM 21 C CAJ 4AJ . . . D 2 0.039 1.028 -23.273 0.5 17.06 ? CAJ 4AJ 201 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #