data_4YDN
#
_model_server_result.job_id            TlTCNtURJ2H1ofrd_o5ZWA 
_model_server_result.datetime_utc      '2024-11-01 01:29:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ydn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    4YDN 
#
_exptl.entry_id    4YDN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              405.185 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-oxadiazol-2-yl]phenyl sulfurofluoridate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YDN 
_cell.length_a            43.093 
_cell.length_b            85.522 
_cell.length_c            64.65 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YDN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 14 A VAL 14 1_555 A N 4AK 15 A 4AK 15 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C VAL 14 A VAL 14 1_555 A N 4AK 15 A 4AK 15 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 A C 4AK 15 A 4AK 15 1_555 A N VAL 16 A VAL 16 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.39 ? 
covale ? covale4 A C 4AK 15 A 4AK 15 1_555 A N VAL 16 A VAL 16 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.393 ? 
covale ? covale5 B C VAL 14 B VAL 14 1_555 B N 4AK 15 B 4AK 15 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 B C VAL 14 B VAL 14 1_555 B N 4AK 15 B 4AK 15 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.336 ? 
covale ? covale7 B C 4AK 15 B 4AK 15 1_555 B N VAL 16 B VAL 16 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 B C 4AK 15 B 4AK 15 1_555 B N VAL 16 B VAL 16 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C14 H7 Cl2 F N2 O5 S' 
_chem_comp.formula_weight    405.185 
_chem_comp.id                2WN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-oxadiazol-2-yl]phenyl sulfurofluoridate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O23 S22 2WN doub 1 n n 
O25 S22 2WN doub 2 n n 
S22 F26 2WN sing 3 n n 
S22 O21 2WN sing 4 n n 
O21 C18 2WN sing 5 n n 
C18 C17 2WN doub 6 n y 
C18 C19 2WN sing 7 n y 
C17 C16 2WN sing 8 n y 
C19 C20 2WN doub 9 n y 
C16 C15 2WN doub 10 n y 
C20 C15 2WN sing 11 n y 
C15 C12 2WN sing 12 n n 
C12 N13 2WN doub 13 n y 
C12 O11 2WN sing 14 n y 
N13 N14 2WN sing 15 n y 
O11 C10 2WN sing 16 n y 
N14 C10 2WN doub 17 n y 
C10 C5 2WN sing 18 n n 
C5 C4 2WN doub 19 n y 
C5 C6 2WN sing 20 n y 
C4 C3 2WN sing 21 n y 
C6 C7 2WN doub 22 n y 
C3 CL9 2WN sing 23 n n 
C3 C2 2WN doub 24 n y 
C7 C2 2WN sing 25 n y 
C7 CL8 2WN sing 26 n n 
C2 O1 2WN sing 27 n n 
O1 H1 2WN sing 28 n n 
C4 H2 2WN sing 29 n n 
C6 H3 2WN sing 30 n n 
C16 H4 2WN sing 31 n n 
C17 H5 2WN sing 32 n n 
C19 H6 2WN sing 33 n n 
C20 H7 2WN sing 34 n n 
#
_atom_sites.entry_id                     4YDN 
_atom_sites.fract_transf_matrix[1][1]    0.023206 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011693 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015468 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2WN A 1 201 1 2WN DRG . 
D 3 4B8 A 1 202 1 4B8 POH . 
E 2 2WN B 1 201 2 2WN DRG . 
F 4 HOH A 1 301 45 HOH HOH . 
F 4 HOH A 2 302 163 HOH HOH . 
F 4 HOH A 3 303 150 HOH HOH . 
F 4 HOH A 4 304 216 HOH HOH . 
F 4 HOH A 5 305 40 HOH HOH . 
F 4 HOH A 6 306 101 HOH HOH . 
F 4 HOH A 7 307 78 HOH HOH . 
F 4 HOH A 8 308 305 HOH HOH . 
F 4 HOH A 9 309 44 HOH HOH . 
F 4 HOH A 10 310 24 HOH HOH . 
F 4 HOH A 11 311 106 HOH HOH . 
F 4 HOH A 12 312 315 HOH HOH . 
F 4 HOH A 13 313 307 HOH HOH . 
F 4 HOH A 14 314 256 HOH HOH . 
F 4 HOH A 15 315 217 HOH HOH . 
F 4 HOH A 16 316 20 HOH HOH . 
F 4 HOH A 17 317 4 HOH HOH . 
F 4 HOH A 18 318 35 HOH HOH . 
F 4 HOH A 19 319 104 HOH HOH . 
F 4 HOH A 20 320 124 HOH HOH . 
F 4 HOH A 21 321 39 HOH HOH . 
F 4 HOH A 22 322 66 HOH HOH . 
F 4 HOH A 23 323 13 HOH HOH . 
F 4 HOH A 24 324 12 HOH HOH . 
F 4 HOH A 25 325 71 HOH HOH . 
F 4 HOH A 26 326 26 HOH HOH . 
F 4 HOH A 27 327 3 HOH HOH . 
F 4 HOH A 28 328 139 HOH HOH . 
F 4 HOH A 29 329 30 HOH HOH . 
F 4 HOH A 30 330 60 HOH HOH . 
F 4 HOH A 31 331 50 HOH HOH . 
F 4 HOH A 32 332 137 HOH HOH . 
F 4 HOH A 33 333 114 HOH HOH . 
F 4 HOH A 34 334 87 HOH HOH . 
F 4 HOH A 35 335 32 HOH HOH . 
F 4 HOH A 36 336 210 HOH HOH . 
F 4 HOH A 37 337 17 HOH HOH . 
F 4 HOH A 38 338 38 HOH HOH . 
F 4 HOH A 39 339 33 HOH HOH . 
F 4 HOH A 40 340 313 HOH HOH . 
F 4 HOH A 41 341 126 HOH HOH . 
F 4 HOH A 42 342 31 HOH HOH . 
F 4 HOH A 43 343 117 HOH HOH . 
F 4 HOH A 44 344 100 HOH HOH . 
F 4 HOH A 45 345 16 HOH HOH . 
F 4 HOH A 46 346 110 HOH HOH . 
F 4 HOH A 47 347 42 HOH HOH . 
F 4 HOH A 48 348 34 HOH HOH . 
F 4 HOH A 49 349 312 HOH HOH . 
F 4 HOH A 50 350 1 HOH HOH . 
F 4 HOH A 51 351 308 HOH HOH . 
F 4 HOH A 52 352 142 HOH HOH . 
F 4 HOH A 53 353 96 HOH HOH . 
F 4 HOH A 54 354 36 HOH HOH . 
F 4 HOH A 55 355 62 HOH HOH . 
F 4 HOH A 56 356 174 HOH HOH . 
F 4 HOH A 57 357 84 HOH HOH . 
F 4 HOH A 58 358 11 HOH HOH . 
F 4 HOH A 59 359 22 HOH HOH . 
F 4 HOH A 60 360 172 HOH HOH . 
F 4 HOH A 61 361 118 HOH HOH . 
F 4 HOH A 62 362 187 HOH HOH . 
F 4 HOH A 63 363 51 HOH HOH . 
F 4 HOH A 64 364 99 HOH HOH . 
F 4 HOH A 65 365 7 HOH HOH . 
F 4 HOH A 66 366 177 HOH HOH . 
F 4 HOH A 67 367 303 HOH HOH . 
F 4 HOH A 68 368 211 HOH HOH . 
F 4 HOH A 69 369 245 HOH HOH . 
F 4 HOH A 70 370 293 HOH HOH . 
F 4 HOH A 71 371 47 HOH HOH . 
F 4 HOH A 72 372 157 HOH HOH . 
F 4 HOH A 73 373 144 HOH HOH . 
F 4 HOH A 74 374 304 HOH HOH . 
F 4 HOH A 75 375 231 HOH HOH . 
F 4 HOH A 76 376 53 HOH HOH . 
F 4 HOH A 77 377 73 HOH HOH . 
F 4 HOH A 78 378 171 HOH HOH . 
F 4 HOH A 79 379 97 HOH HOH . 
F 4 HOH A 80 380 121 HOH HOH . 
F 4 HOH A 81 381 127 HOH HOH . 
F 4 HOH A 82 382 147 HOH HOH . 
F 4 HOH A 83 383 314 HOH HOH . 
G 4 HOH B 1 301 279 HOH HOH . 
G 4 HOH B 2 302 28 HOH HOH . 
G 4 HOH B 3 303 27 HOH HOH . 
G 4 HOH B 4 304 196 HOH HOH . 
G 4 HOH B 5 305 94 HOH HOH . 
G 4 HOH B 6 306 79 HOH HOH . 
G 4 HOH B 7 307 86 HOH HOH . 
G 4 HOH B 8 308 5 HOH HOH . 
G 4 HOH B 9 309 23 HOH HOH . 
G 4 HOH B 10 310 83 HOH HOH . 
G 4 HOH B 11 311 93 HOH HOH . 
G 4 HOH B 12 312 112 HOH HOH . 
G 4 HOH B 13 313 8 HOH HOH . 
G 4 HOH B 14 314 61 HOH HOH . 
G 4 HOH B 15 315 19 HOH HOH . 
G 4 HOH B 16 316 74 HOH HOH . 
G 4 HOH B 17 317 161 HOH HOH . 
G 4 HOH B 18 318 10 HOH HOH . 
G 4 HOH B 19 319 2 HOH HOH . 
G 4 HOH B 20 320 25 HOH HOH . 
G 4 HOH B 21 321 29 HOH HOH . 
G 4 HOH B 22 322 37 HOH HOH . 
G 4 HOH B 23 323 21 HOH HOH . 
G 4 HOH B 24 324 113 HOH HOH . 
G 4 HOH B 25 325 186 HOH HOH . 
G 4 HOH B 26 326 14 HOH HOH . 
G 4 HOH B 27 327 234 HOH HOH . 
G 4 HOH B 28 328 140 HOH HOH . 
G 4 HOH B 29 329 55 HOH HOH . 
G 4 HOH B 30 330 136 HOH HOH . 
G 4 HOH B 31 331 15 HOH HOH . 
G 4 HOH B 32 332 57 HOH HOH . 
G 4 HOH B 33 333 81 HOH HOH . 
G 4 HOH B 34 334 192 HOH HOH . 
G 4 HOH B 35 335 72 HOH HOH . 
G 4 HOH B 36 336 64 HOH HOH . 
G 4 HOH B 37 337 46 HOH HOH . 
G 4 HOH B 38 338 49 HOH HOH . 
G 4 HOH B 39 339 138 HOH HOH . 
G 4 HOH B 40 340 65 HOH HOH . 
G 4 HOH B 41 341 63 HOH HOH . 
G 4 HOH B 42 342 182 HOH HOH . 
G 4 HOH B 43 343 75 HOH HOH . 
G 4 HOH B 44 344 41 HOH HOH . 
G 4 HOH B 45 345 95 HOH HOH . 
G 4 HOH B 46 346 82 HOH HOH . 
G 4 HOH B 47 347 120 HOH HOH . 
G 4 HOH B 48 348 9 HOH HOH . 
G 4 HOH B 49 349 18 HOH HOH . 
G 4 HOH B 50 350 89 HOH HOH . 
G 4 HOH B 51 351 115 HOH HOH . 
G 4 HOH B 52 352 263 HOH HOH . 
G 4 HOH B 53 353 76 HOH HOH . 
G 4 HOH B 54 354 122 HOH HOH . 
G 4 HOH B 55 355 91 HOH HOH . 
G 4 HOH B 56 356 70 HOH HOH . 
G 4 HOH B 57 357 116 HOH HOH . 
G 4 HOH B 58 358 6 HOH HOH . 
G 4 HOH B 59 359 195 HOH HOH . 
G 4 HOH B 60 360 132 HOH HOH . 
G 4 HOH B 61 361 67 HOH HOH . 
G 4 HOH B 62 362 206 HOH HOH . 
G 4 HOH B 63 363 129 HOH HOH . 
G 4 HOH B 64 364 280 HOH HOH . 
G 4 HOH B 65 365 190 HOH HOH . 
G 4 HOH B 66 366 108 HOH HOH . 
G 4 HOH B 67 367 98 HOH HOH . 
G 4 HOH B 68 368 183 HOH HOH . 
G 4 HOH B 69 369 310 HOH HOH . 
G 4 HOH B 70 370 135 HOH HOH . 
G 4 HOH B 71 371 180 HOH HOH . 
G 4 HOH B 72 372 318 HOH HOH . 
G 4 HOH B 73 373 267 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 2WN . A . C 2 -0.128 0.183 -11.954 0.25 21.01 ? O1 2WN 201 A 1 
HETATM 2 C C2 2WN . A . C 2 0 0 -10.6 0.25 20.32 ? C2 2WN 201 A 1 
HETATM 3 C C3 2WN . A . C 2 -0.384 1.188 -9.827 0.25 17.88 ? C3 2WN 201 A 1 
HETATM 4 C C4 2WN . A . C 2 -0.303 1.096 -8.445 0.25 19.51 ? C4 2WN 201 A 1 
HETATM 5 C C5 2WN . A . C 2 0 0 -7.865 0.25 18.82 ? C5 2WN 201 A 1 
HETATM 6 C C6 2WN . A . C 2 0.446 -1.197 -8.657 0.25 20.19 ? C6 2WN 201 A 1 
HETATM 7 C C7 2WN . A . C 2 0.369 -1.112 -10.036 0.25 19.59 ? C7 2WN 201 A 1 
HETATM 8 CL CL8 2WN . A . C 2 0.789 -2.472 -10.987 0.25 21.39 ? CL8 2WN 201 A 1 
HETATM 9 CL CL9 2WN . A . C 2 -0.894 2.659 -10.559 0.25 13.62 ? CL9 2WN 201 A 1 
HETATM 10 C C10 2WN . A . C 2 0.2 -0.214 -6.541 0.25 20.91 ? C10 2WN 201 A 1 
HETATM 11 O O11 2WN . A . C 2 -0.485 0.499 -5.673 0.25 20.35 ? O11 2WN 201 A 1 
HETATM 12 C C12 2WN . A . C 2 0 0 -4.536 0.25 22.49 ? C12 2WN 201 A 1 
HETATM 13 N N13 2WN . A . C 2 0.858 -0.916 -4.731 0.25 21.91 ? N13 2WN 201 A 1 
HETATM 14 N N14 2WN . A . C 2 1.008 -1.061 -5.906 0.25 25.42 ? N14 2WN 201 A 1 
HETATM 15 C C15 2WN . A . C 2 -0.475 0.451 -3.351 0.25 21.64 ? C15 2WN 201 A 1 
HETATM 16 C C16 2WN . A . C 2 -0.951 1.744 -3.204 0.25 25.02 ? C16 2WN 201 A 1 
HETATM 17 C C17 2WN . A . C 2 -1.397 2.183 -1.966 0.25 24.01 ? C17 2WN 201 A 1 
HETATM 18 C C18 2WN . A . C 2 -1.366 1.324 -0.872 0.25 25.23 ? C18 2WN 201 A 1 
HETATM 19 C C19 2WN . A . C 2 -0.89 0.026 -1.024 0.25 24.5 ? C19 2WN 201 A 1 
HETATM 20 C C20 2WN . A . C 2 -0.445 -0.413 -2.263 0.25 23.24 ? C20 2WN 201 A 1 
HETATM 21 O O21 2WN . A . C 2 -1.799 1.75 0.345 0.25 31 ? O21 2WN 201 A 1 
HETATM 22 S S22 2WN . A . C 2 -0.612 1.754 1.31 0.25 33.05 ? S22 2WN 201 A 1 
HETATM 23 O O23 2WN . A . C 2 0.62 2.271 0.564 0.25 34.58 ? O23 2WN 201 A 1 
HETATM 24 O O25 2WN . A . C 2 -0.348 0.33 1.804 0.25 35.49 ? O25 2WN 201 A 1 
HETATM 25 F F26 2WN . A . C 2 -0.874 2.544 2.353 0.25 32.04 ? F26 2WN 201 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           38 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#