data_4YDN
#
_model_server_result.job_id            '_suagvHuoNFYqql4WH0dTw' 
_model_server_result.datetime_utc      '2024-11-01 01:32:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ydn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    4YDN 
#
_exptl.entry_id    4YDN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              323.131 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,6-dichloro-4-[5-(4-hydroxyphenyl)-1,3,4-oxadiazol-2-yl]phenol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YDN 
_cell.length_a            43.093 
_cell.length_b            85.522 
_cell.length_c            64.65 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YDN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 14 A VAL 14 1_555 A N 4AK 15 A 4AK 15 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C VAL 14 A VAL 14 1_555 A N 4AK 15 A 4AK 15 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 A C 4AK 15 A 4AK 15 1_555 A N VAL 16 A VAL 16 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.39 ? 
covale ? covale4 A C 4AK 15 A 4AK 15 1_555 A N VAL 16 A VAL 16 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.393 ? 
covale ? covale5 B C VAL 14 B VAL 14 1_555 B N 4AK 15 B 4AK 15 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 B C VAL 14 B VAL 14 1_555 B N 4AK 15 B 4AK 15 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.336 ? 
covale ? covale7 B C 4AK 15 B 4AK 15 1_555 B N VAL 16 B VAL 16 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 B C 4AK 15 B 4AK 15 1_555 B N VAL 16 B VAL 16 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C14 H8 Cl2 N2 O3' 
_chem_comp.formula_weight    323.131 
_chem_comp.id                4B8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,6-dichloro-4-[5-(4-hydroxyphenyl)-1,3,4-oxadiazol-2-yl]phenol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA CAN 4B8 sing 62 n n 
CAN CAE 4B8 doub 63 n y 
CAN CAF 4B8 sing 64 n y 
CAE CAG 4B8 sing 65 n y 
CAF CAH 4B8 doub 66 n y 
CAG CAQ 4B8 doub 67 n y 
CAH CAQ 4B8 sing 68 n y 
CAQ CAT 4B8 sing 69 n n 
CAT NAK 4B8 doub 70 n y 
CAT OAM 4B8 sing 71 n y 
NAK NAL 4B8 sing 72 n y 
OAM CAU 4B8 sing 73 n y 
NAL CAU 4B8 doub 74 n y 
CAU CAR 4B8 sing 75 n n 
CAR CAI 4B8 doub 76 n y 
CAR CAJ 4B8 sing 77 n y 
CAI CAO 4B8 sing 78 n y 
CAJ CAP 4B8 doub 79 n y 
CAO CLAC 4B8 sing 80 n n 
CAO CAS 4B8 doub 81 n y 
CAP CAS 4B8 sing 82 n y 
CAP CLAD 4B8 sing 83 n n 
CAS OAB 4B8 sing 84 n n 
CAI H1 4B8 sing 85 n n 
OAB H2 4B8 sing 86 n n 
CAJ H3 4B8 sing 87 n n 
CAG H4 4B8 sing 88 n n 
CAE H5 4B8 sing 89 n n 
OAA H6 4B8 sing 90 n n 
CAF H7 4B8 sing 91 n n 
CAH H8 4B8 sing 92 n n 
#
_atom_sites.entry_id                     4YDN 
_atom_sites.fract_transf_matrix[1][1]    0.023206 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011693 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015468 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2WN A 1 201 1 2WN DRG . 
D 3 4B8 A 1 202 1 4B8 POH . 
E 2 2WN B 1 201 2 2WN DRG . 
F 4 HOH A 1 301 45 HOH HOH . 
F 4 HOH A 2 302 163 HOH HOH . 
F 4 HOH A 3 303 150 HOH HOH . 
F 4 HOH A 4 304 216 HOH HOH . 
F 4 HOH A 5 305 40 HOH HOH . 
F 4 HOH A 6 306 101 HOH HOH . 
F 4 HOH A 7 307 78 HOH HOH . 
F 4 HOH A 8 308 305 HOH HOH . 
F 4 HOH A 9 309 44 HOH HOH . 
F 4 HOH A 10 310 24 HOH HOH . 
F 4 HOH A 11 311 106 HOH HOH . 
F 4 HOH A 12 312 315 HOH HOH . 
F 4 HOH A 13 313 307 HOH HOH . 
F 4 HOH A 14 314 256 HOH HOH . 
F 4 HOH A 15 315 217 HOH HOH . 
F 4 HOH A 16 316 20 HOH HOH . 
F 4 HOH A 17 317 4 HOH HOH . 
F 4 HOH A 18 318 35 HOH HOH . 
F 4 HOH A 19 319 104 HOH HOH . 
F 4 HOH A 20 320 124 HOH HOH . 
F 4 HOH A 21 321 39 HOH HOH . 
F 4 HOH A 22 322 66 HOH HOH . 
F 4 HOH A 23 323 13 HOH HOH . 
F 4 HOH A 24 324 12 HOH HOH . 
F 4 HOH A 25 325 71 HOH HOH . 
F 4 HOH A 26 326 26 HOH HOH . 
F 4 HOH A 27 327 3 HOH HOH . 
F 4 HOH A 28 328 139 HOH HOH . 
F 4 HOH A 29 329 30 HOH HOH . 
F 4 HOH A 30 330 60 HOH HOH . 
F 4 HOH A 31 331 50 HOH HOH . 
F 4 HOH A 32 332 137 HOH HOH . 
F 4 HOH A 33 333 114 HOH HOH . 
F 4 HOH A 34 334 87 HOH HOH . 
F 4 HOH A 35 335 32 HOH HOH . 
F 4 HOH A 36 336 210 HOH HOH . 
F 4 HOH A 37 337 17 HOH HOH . 
F 4 HOH A 38 338 38 HOH HOH . 
F 4 HOH A 39 339 33 HOH HOH . 
F 4 HOH A 40 340 313 HOH HOH . 
F 4 HOH A 41 341 126 HOH HOH . 
F 4 HOH A 42 342 31 HOH HOH . 
F 4 HOH A 43 343 117 HOH HOH . 
F 4 HOH A 44 344 100 HOH HOH . 
F 4 HOH A 45 345 16 HOH HOH . 
F 4 HOH A 46 346 110 HOH HOH . 
F 4 HOH A 47 347 42 HOH HOH . 
F 4 HOH A 48 348 34 HOH HOH . 
F 4 HOH A 49 349 312 HOH HOH . 
F 4 HOH A 50 350 1 HOH HOH . 
F 4 HOH A 51 351 308 HOH HOH . 
F 4 HOH A 52 352 142 HOH HOH . 
F 4 HOH A 53 353 96 HOH HOH . 
F 4 HOH A 54 354 36 HOH HOH . 
F 4 HOH A 55 355 62 HOH HOH . 
F 4 HOH A 56 356 174 HOH HOH . 
F 4 HOH A 57 357 84 HOH HOH . 
F 4 HOH A 58 358 11 HOH HOH . 
F 4 HOH A 59 359 22 HOH HOH . 
F 4 HOH A 60 360 172 HOH HOH . 
F 4 HOH A 61 361 118 HOH HOH . 
F 4 HOH A 62 362 187 HOH HOH . 
F 4 HOH A 63 363 51 HOH HOH . 
F 4 HOH A 64 364 99 HOH HOH . 
F 4 HOH A 65 365 7 HOH HOH . 
F 4 HOH A 66 366 177 HOH HOH . 
F 4 HOH A 67 367 303 HOH HOH . 
F 4 HOH A 68 368 211 HOH HOH . 
F 4 HOH A 69 369 245 HOH HOH . 
F 4 HOH A 70 370 293 HOH HOH . 
F 4 HOH A 71 371 47 HOH HOH . 
F 4 HOH A 72 372 157 HOH HOH . 
F 4 HOH A 73 373 144 HOH HOH . 
F 4 HOH A 74 374 304 HOH HOH . 
F 4 HOH A 75 375 231 HOH HOH . 
F 4 HOH A 76 376 53 HOH HOH . 
F 4 HOH A 77 377 73 HOH HOH . 
F 4 HOH A 78 378 171 HOH HOH . 
F 4 HOH A 79 379 97 HOH HOH . 
F 4 HOH A 80 380 121 HOH HOH . 
F 4 HOH A 81 381 127 HOH HOH . 
F 4 HOH A 82 382 147 HOH HOH . 
F 4 HOH A 83 383 314 HOH HOH . 
G 4 HOH B 1 301 279 HOH HOH . 
G 4 HOH B 2 302 28 HOH HOH . 
G 4 HOH B 3 303 27 HOH HOH . 
G 4 HOH B 4 304 196 HOH HOH . 
G 4 HOH B 5 305 94 HOH HOH . 
G 4 HOH B 6 306 79 HOH HOH . 
G 4 HOH B 7 307 86 HOH HOH . 
G 4 HOH B 8 308 5 HOH HOH . 
G 4 HOH B 9 309 23 HOH HOH . 
G 4 HOH B 10 310 83 HOH HOH . 
G 4 HOH B 11 311 93 HOH HOH . 
G 4 HOH B 12 312 112 HOH HOH . 
G 4 HOH B 13 313 8 HOH HOH . 
G 4 HOH B 14 314 61 HOH HOH . 
G 4 HOH B 15 315 19 HOH HOH . 
G 4 HOH B 16 316 74 HOH HOH . 
G 4 HOH B 17 317 161 HOH HOH . 
G 4 HOH B 18 318 10 HOH HOH . 
G 4 HOH B 19 319 2 HOH HOH . 
G 4 HOH B 20 320 25 HOH HOH . 
G 4 HOH B 21 321 29 HOH HOH . 
G 4 HOH B 22 322 37 HOH HOH . 
G 4 HOH B 23 323 21 HOH HOH . 
G 4 HOH B 24 324 113 HOH HOH . 
G 4 HOH B 25 325 186 HOH HOH . 
G 4 HOH B 26 326 14 HOH HOH . 
G 4 HOH B 27 327 234 HOH HOH . 
G 4 HOH B 28 328 140 HOH HOH . 
G 4 HOH B 29 329 55 HOH HOH . 
G 4 HOH B 30 330 136 HOH HOH . 
G 4 HOH B 31 331 15 HOH HOH . 
G 4 HOH B 32 332 57 HOH HOH . 
G 4 HOH B 33 333 81 HOH HOH . 
G 4 HOH B 34 334 192 HOH HOH . 
G 4 HOH B 35 335 72 HOH HOH . 
G 4 HOH B 36 336 64 HOH HOH . 
G 4 HOH B 37 337 46 HOH HOH . 
G 4 HOH B 38 338 49 HOH HOH . 
G 4 HOH B 39 339 138 HOH HOH . 
G 4 HOH B 40 340 65 HOH HOH . 
G 4 HOH B 41 341 63 HOH HOH . 
G 4 HOH B 42 342 182 HOH HOH . 
G 4 HOH B 43 343 75 HOH HOH . 
G 4 HOH B 44 344 41 HOH HOH . 
G 4 HOH B 45 345 95 HOH HOH . 
G 4 HOH B 46 346 82 HOH HOH . 
G 4 HOH B 47 347 120 HOH HOH . 
G 4 HOH B 48 348 9 HOH HOH . 
G 4 HOH B 49 349 18 HOH HOH . 
G 4 HOH B 50 350 89 HOH HOH . 
G 4 HOH B 51 351 115 HOH HOH . 
G 4 HOH B 52 352 263 HOH HOH . 
G 4 HOH B 53 353 76 HOH HOH . 
G 4 HOH B 54 354 122 HOH HOH . 
G 4 HOH B 55 355 91 HOH HOH . 
G 4 HOH B 56 356 70 HOH HOH . 
G 4 HOH B 57 357 116 HOH HOH . 
G 4 HOH B 58 358 6 HOH HOH . 
G 4 HOH B 59 359 195 HOH HOH . 
G 4 HOH B 60 360 132 HOH HOH . 
G 4 HOH B 61 361 67 HOH HOH . 
G 4 HOH B 62 362 206 HOH HOH . 
G 4 HOH B 63 363 129 HOH HOH . 
G 4 HOH B 64 364 280 HOH HOH . 
G 4 HOH B 65 365 190 HOH HOH . 
G 4 HOH B 66 366 108 HOH HOH . 
G 4 HOH B 67 367 98 HOH HOH . 
G 4 HOH B 68 368 183 HOH HOH . 
G 4 HOH B 69 369 310 HOH HOH . 
G 4 HOH B 70 370 135 HOH HOH . 
G 4 HOH B 71 371 180 HOH HOH . 
G 4 HOH B 72 372 318 HOH HOH . 
G 4 HOH B 73 373 267 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAI 4B8 . B . D 3 -1.393 1.306 -3.289 0.25 20.39 ? CAI 4B8 202 A 1 
HETATM 2 C CAO 4B8 . B . D 3 -1.823 1.721 -2.044 0.25 23.06 ? CAO 4B8 202 A 1 
HETATM 3 CL CLAC 4B8 . B . D 3 -3.027 2.887 -1.921 0.25 37.2 ? CLAC 4B8 202 A 1 
HETATM 4 C CAS 4B8 . B . D 3 -1.251 1.15 -0.914 0.25 24.7 ? CAS 4B8 202 A 1 
HETATM 5 O OAB 4B8 . B . D 3 -1.678 1.555 0.312 0.25 31.05 ? OAB 4B8 202 A 1 
HETATM 6 C CAP 4B8 . B . D 3 -0.259 0.181 -0.991 0.25 23.43 ? CAP 4B8 202 A 1 
HETATM 7 CL CLAD 4B8 . B . D 3 0.427 -0.506 0.456 0.25 32.74 ? CLAD 4B8 202 A 1 
HETATM 8 C CAJ 4B8 . B . D 3 0.171 -0.227 -2.248 0.25 19.56 ? CAJ 4B8 202 A 1 
HETATM 9 C CAR 4B8 . B . D 3 -0.397 0.348 -3.386 0.25 20.02 ? CAR 4B8 202 A 1 
HETATM 10 C CAU 4B8 . B . D 3 0 0 -4.589 0.25 21.29 ? CAU 4B8 202 A 1 
HETATM 11 O OAM 4B8 . B . D 3 -0.448 0.459 -5.709 0.25 18.16 ? OAM 4B8 202 A 1 
HETATM 12 N NAL 4B8 . B . D 3 0.892 -0.997 -4.822 0.25 21.59 ? NAL 4B8 202 A 1 
HETATM 13 N NAK 4B8 . B . D 3 1.026 -1.121 -5.999 0.25 24.23 ? NAK 4B8 202 A 1 
HETATM 14 C CAT 4B8 . B . D 3 0.222 -0.251 -6.607 0.25 19.38 ? CAT 4B8 202 A 1 
HETATM 15 C CAQ 4B8 . B . D 3 0 0 -7.929 0.25 19.38 ? CAQ 4B8 202 A 1 
HETATM 16 C CAG 4B8 . B . D 3 0.465 -1.177 -8.758 0.25 20.45 ? CAG 4B8 202 A 1 
HETATM 17 C CAE 4B8 . B . D 3 0.365 -1.056 -10.135 0.25 21.86 ? CAE 4B8 202 A 1 
HETATM 18 C CAN 4B8 . B . D 3 0 0 -10.69 0.25 21.84 ? CAN 4B8 202 A 1 
HETATM 19 O OAA 4B8 . B . D 3 -0.185 0.262 -12.045 0.25 23.6 ? OAA 4B8 202 A 1 
HETATM 20 C CAF 4B8 . B . D 3 -0.432 1.2 -9.862 0.25 20.99 ? CAF 4B8 202 A 1 
HETATM 21 C CAH 4B8 . B . D 3 -0.333 1.083 -8.482 0.25 20.13 ? CAH 4B8 202 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#