data_4YEM # _model_server_result.job_id NajTxZtzIG15DiL7P7cpeA _model_server_result.datetime_utc '2024-11-24 06:19:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":216}' # _entry.id 4YEM # _exptl.entry_id 4YEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 79.904 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BROMIDE ION' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YEM _cell.length_a 78.58 _cell.length_b 78.58 _cell.length_c 37.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 A NH2 ARG 14 A ARG 14 1_555 Y PT PT . A PT 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc2 A ND1 HIS 15 A HIS 15 1_555 B PT PT . A PT 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 A NE2 HIS 15 A HIS 15 1_555 Y PT PT . A PT 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc4 A O SER 60 A SER 60 1_555 T NA NA . A NA 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc5 A O CYS 64 A CYS 64 1_555 T NA NA . A NA 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc6 A OG SER 72 A SER 72 1_555 T NA NA . A NA 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc7 A O ARG 73 A ARG 73 1_555 T NA NA . A NA 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc8 A NZ LYS 96 A LYS 96 1_555 S PT PT . A PT 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc9 S PT PT . A PT 218 1_555 Z O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc10 T NA NA . A NA 219 1_555 Z O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc11 T NA NA . A NA 219 1_555 Z O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc12 Y PT PT . A PT 224 1_555 Z O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? # _chem_comp.formula 'Br -1' _chem_comp.formula_weight 79.904 _chem_comp.id BR _chem_comp.mon_nstd_flag . _chem_comp.name 'BROMIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YEM _atom_sites.fract_transf_matrix[1][1] 0.012726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PT A 1 201 201 PT PT . C 3 BR A 1 202 202 BR BR . D 3 BR A 1 203 203 BR BR . E 3 BR A 1 204 204 BR BR . F 3 BR A 1 205 205 BR BR . G 3 BR A 1 206 206 BR BR . H 3 BR A 1 207 207 BR BR . I 3 BR A 1 208 208 BR BR . J 3 BR A 1 209 209 BR BR . K 3 BR A 1 210 210 BR BR . L 3 BR A 1 211 211 BR BR . M 3 BR A 1 212 212 BR BR . N 3 BR A 1 213 213 BR BR . O 3 BR A 1 214 214 BR BR . P 3 BR A 1 215 215 BR BR . Q 3 BR A 1 216 216 BR BR . R 3 BR A 1 217 217 BR BR . S 2 PT A 1 218 218 PT PT . T 4 NA A 1 219 219 NA NA . U 5 DMS A 1 220 220 DMS DMS . V 5 DMS A 1 221 221 DMS DMS . W 6 ACT A 1 222 222 ACT ACT . X 7 CL A 1 223 223 CL CL . Y 2 PT A 1 224 224 PT PT . Z 8 HOH A 1 301 38 HOH HOH . Z 8 HOH A 2 302 249 HOH HOH . Z 8 HOH A 3 303 104 HOH HOH . Z 8 HOH A 4 304 261 HOH HOH . Z 8 HOH A 5 305 307 HOH HOH . Z 8 HOH A 6 306 306 HOH HOH . Z 8 HOH A 7 307 224 HOH HOH . Z 8 HOH A 8 308 290 HOH HOH . Z 8 HOH A 9 309 13 HOH HOH . Z 8 HOH A 10 310 26 HOH HOH . Z 8 HOH A 11 311 36 HOH HOH . Z 8 HOH A 12 312 245 HOH HOH . Z 8 HOH A 13 313 28 HOH HOH . Z 8 HOH A 14 314 189 HOH HOH . Z 8 HOH A 15 315 295 HOH HOH . Z 8 HOH A 16 316 58 HOH HOH . Z 8 HOH A 17 317 205 HOH HOH . Z 8 HOH A 18 318 272 HOH HOH . Z 8 HOH A 19 319 19 HOH HOH . Z 8 HOH A 20 320 27 HOH HOH . Z 8 HOH A 21 321 199 HOH HOH . Z 8 HOH A 22 322 289 HOH HOH . Z 8 HOH A 23 323 2 HOH HOH . Z 8 HOH A 24 324 256 HOH HOH . Z 8 HOH A 25 325 158 HOH HOH . Z 8 HOH A 26 326 39 HOH HOH . Z 8 HOH A 27 327 291 HOH HOH . Z 8 HOH A 28 328 12 HOH HOH . Z 8 HOH A 29 329 89 HOH HOH . Z 8 HOH A 30 330 59 HOH HOH . Z 8 HOH A 31 331 67 HOH HOH . Z 8 HOH A 32 332 22 HOH HOH . Z 8 HOH A 33 333 48 HOH HOH . Z 8 HOH A 34 334 270 HOH HOH . Z 8 HOH A 35 335 17 HOH HOH . Z 8 HOH A 36 336 284 HOH HOH . Z 8 HOH A 37 337 88 HOH HOH . Z 8 HOH A 38 338 20 HOH HOH . Z 8 HOH A 39 339 62 HOH HOH . Z 8 HOH A 40 340 76 HOH HOH . Z 8 HOH A 41 341 82 HOH HOH . Z 8 HOH A 42 342 262 HOH HOH . Z 8 HOH A 43 343 51 HOH HOH . Z 8 HOH A 44 344 113 HOH HOH . Z 8 HOH A 45 345 42 HOH HOH . Z 8 HOH A 46 346 16 HOH HOH . Z 8 HOH A 47 347 188 HOH HOH . Z 8 HOH A 48 348 75 HOH HOH . Z 8 HOH A 49 349 105 HOH HOH . Z 8 HOH A 50 350 223 HOH HOH . Z 8 HOH A 51 351 252 HOH HOH . Z 8 HOH A 52 352 4 HOH HOH . Z 8 HOH A 53 353 193 HOH HOH . Z 8 HOH A 54 354 242 HOH HOH . Z 8 HOH A 55 355 14 HOH HOH . Z 8 HOH A 56 356 196 HOH HOH . Z 8 HOH A 57 357 60 HOH HOH . Z 8 HOH A 58 358 192 HOH HOH . Z 8 HOH A 59 359 248 HOH HOH . Z 8 HOH A 60 360 1 HOH HOH . Z 8 HOH A 61 361 106 HOH HOH . Z 8 HOH A 62 362 184 HOH HOH . Z 8 HOH A 63 363 92 HOH HOH . Z 8 HOH A 64 364 243 HOH HOH . Z 8 HOH A 65 365 207 HOH HOH . Z 8 HOH A 66 366 33 HOH HOH . Z 8 HOH A 67 367 31 HOH HOH . Z 8 HOH A 68 368 236 HOH HOH . Z 8 HOH A 69 369 10 HOH HOH . Z 8 HOH A 70 370 301 HOH HOH . Z 8 HOH A 71 371 8 HOH HOH . Z 8 HOH A 72 372 5 HOH HOH . Z 8 HOH A 73 373 74 HOH HOH . Z 8 HOH A 74 374 278 HOH HOH . Z 8 HOH A 75 375 293 HOH HOH . Z 8 HOH A 76 376 304 HOH HOH . Z 8 HOH A 77 377 251 HOH HOH . Z 8 HOH A 78 378 197 HOH HOH . Z 8 HOH A 79 379 200 HOH HOH . Z 8 HOH A 80 380 206 HOH HOH . Z 8 HOH A 81 381 185 HOH HOH . Z 8 HOH A 82 382 70 HOH HOH . Z 8 HOH A 83 383 296 HOH HOH . Z 8 HOH A 84 384 37 HOH HOH . Z 8 HOH A 85 385 269 HOH HOH . Z 8 HOH A 86 386 265 HOH HOH . Z 8 HOH A 87 387 103 HOH HOH . Z 8 HOH A 88 388 259 HOH HOH . Z 8 HOH A 89 389 204 HOH HOH . Z 8 HOH A 90 390 186 HOH HOH . Z 8 HOH A 91 391 215 HOH HOH . Z 8 HOH A 92 392 85 HOH HOH . Z 8 HOH A 93 393 246 HOH HOH . Z 8 HOH A 94 394 229 HOH HOH . Z 8 HOH A 95 395 233 HOH HOH . Z 8 HOH A 96 396 240 HOH HOH . Z 8 HOH A 97 397 279 HOH HOH . Z 8 HOH A 98 398 107 HOH HOH . Z 8 HOH A 99 399 299 HOH HOH . Z 8 HOH A 100 400 287 HOH HOH . Z 8 HOH A 101 401 222 HOH HOH . Z 8 HOH A 102 402 219 HOH HOH . Z 8 HOH A 103 403 225 HOH HOH . Z 8 HOH A 104 404 231 HOH HOH . Z 8 HOH A 105 405 274 HOH HOH . Z 8 HOH A 106 406 271 HOH HOH . Z 8 HOH A 107 407 302 HOH HOH . Z 8 HOH A 108 408 275 HOH HOH . Z 8 HOH A 109 409 237 HOH HOH . Z 8 HOH A 110 410 263 HOH HOH . Z 8 HOH A 111 411 3 HOH HOH . Z 8 HOH A 112 412 6 HOH HOH . Z 8 HOH A 113 413 7 HOH HOH . Z 8 HOH A 114 414 9 HOH HOH . Z 8 HOH A 115 415 11 HOH HOH . Z 8 HOH A 116 416 15 HOH HOH . Z 8 HOH A 117 417 18 HOH HOH . Z 8 HOH A 118 418 21 HOH HOH . Z 8 HOH A 119 419 23 HOH HOH . Z 8 HOH A 120 420 24 HOH HOH . Z 8 HOH A 121 421 25 HOH HOH . Z 8 HOH A 122 422 29 HOH HOH . Z 8 HOH A 123 423 30 HOH HOH . Z 8 HOH A 124 424 32 HOH HOH . Z 8 HOH A 125 425 35 HOH HOH . Z 8 HOH A 126 426 40 HOH HOH . Z 8 HOH A 127 427 45 HOH HOH . Z 8 HOH A 128 428 55 HOH HOH . Z 8 HOH A 129 429 56 HOH HOH . Z 8 HOH A 130 430 57 HOH HOH . Z 8 HOH A 131 431 65 HOH HOH . Z 8 HOH A 132 432 66 HOH HOH . Z 8 HOH A 133 433 68 HOH HOH . Z 8 HOH A 134 434 69 HOH HOH . Z 8 HOH A 135 435 71 HOH HOH . Z 8 HOH A 136 436 80 HOH HOH . Z 8 HOH A 137 437 83 HOH HOH . Z 8 HOH A 138 438 86 HOH HOH . Z 8 HOH A 139 439 87 HOH HOH . Z 8 HOH A 140 440 99 HOH HOH . Z 8 HOH A 141 441 109 HOH HOH . Z 8 HOH A 142 442 190 HOH HOH . Z 8 HOH A 143 443 191 HOH HOH . Z 8 HOH A 144 444 194 HOH HOH . Z 8 HOH A 145 445 201 HOH HOH . Z 8 HOH A 146 446 202 HOH HOH . Z 8 HOH A 147 447 203 HOH HOH . Z 8 HOH A 148 448 208 HOH HOH . Z 8 HOH A 149 449 209 HOH HOH . Z 8 HOH A 150 450 210 HOH HOH . Z 8 HOH A 151 451 212 HOH HOH . Z 8 HOH A 152 452 213 HOH HOH . Z 8 HOH A 153 453 214 HOH HOH . Z 8 HOH A 154 454 216 HOH HOH . Z 8 HOH A 155 455 217 HOH HOH . Z 8 HOH A 156 456 218 HOH HOH . Z 8 HOH A 157 457 220 HOH HOH . Z 8 HOH A 158 458 221 HOH HOH . Z 8 HOH A 159 459 226 HOH HOH . Z 8 HOH A 160 460 227 HOH HOH . Z 8 HOH A 161 461 228 HOH HOH . Z 8 HOH A 162 462 230 HOH HOH . Z 8 HOH A 163 463 244 HOH HOH . Z 8 HOH A 164 464 253 HOH HOH . Z 8 HOH A 165 465 254 HOH HOH . Z 8 HOH A 166 466 257 HOH HOH . Z 8 HOH A 167 467 258 HOH HOH . Z 8 HOH A 168 468 266 HOH HOH . Z 8 HOH A 169 469 276 HOH HOH . Z 8 HOH A 170 470 277 HOH HOH . Z 8 HOH A 171 471 283 HOH HOH . Z 8 HOH A 172 472 286 HOH HOH . Z 8 HOH A 173 473 288 HOH HOH . Z 8 HOH A 174 474 292 HOH HOH . Z 8 HOH A 175 475 298 HOH HOH . Z 8 HOH A 176 476 300 HOH HOH . Z 8 HOH A 177 477 303 HOH HOH . Z 8 HOH A 178 478 305 HOH HOH . Z 8 HOH A 179 479 308 HOH HOH . Z 8 HOH A 180 480 309 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol BR _atom_site.label_atom_id BR _atom_site.label_comp_id BR _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.23 _atom_site.Cartn_y 5.201 _atom_site.Cartn_z 15.744 _atom_site.occupancy 0.66 _atom_site.B_iso_or_equiv 26.06 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id BR _atom_site.auth_comp_id BR _atom_site.auth_seq_id 216 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #