data_4YEO # _model_server_result.job_id nNQp1LTK5m9cevUPgKq-iQ _model_server_result.datetime_utc '2024-11-28 00:56:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yeo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 4YEO # _exptl.entry_id 4YEO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.08 _cell.angle_beta 72 _cell.angle_gamma 67.81 _cell.entry_id 4YEO _cell.length_a 26.998 _cell.length_b 31.807 _cell.length_c 34.072 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YEO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A N LYS 1 A LYS 1 1_555 F PT PT . A PT 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 A NE2 HIS 15 A HIS 15 1_555 B PT1 CPT . A CPT 201 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.962 ? metalc ? metalc3 A NE2 HIS 15 A HIS 15 1_555 C PT PT . A PT 202 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.449 ? metalc ? metalc4 A NZ LYS 116 A LYS 116 1_555 E PT PT . A PT 204 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.978 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 108 n n C1 C2 EDO sing 109 n n C1 H11 EDO sing 110 n n C1 H12 EDO sing 111 n n O1 HO1 EDO sing 112 n n C2 O2 EDO sing 113 n n C2 H21 EDO sing 114 n n C2 H22 EDO sing 115 n n O2 HO2 EDO sing 116 n n # _atom_sites.entry_id 4YEO _atom_sites.fract_transf_matrix[1][1] 0.03704 _atom_sites.fract_transf_matrix[1][2] -0.015108 _atom_sites.fract_transf_matrix[1][3] -0.013853 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033954 _atom_sites.fract_transf_matrix[2][3] 0.003907 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031064 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CPT A 1 201 200 CPT CPT . C 3 PT A 1 202 201 PT PT . D 3 PT A 1 203 202 PT PT . E 3 PT A 1 204 203 PT PT . F 3 PT A 1 205 204 PT PT . G 4 EDO A 1 206 205 EDO EDO . H 5 DMS A 1 207 207 DMS DMS . I 5 DMS A 1 208 209 DMS DMS . J 6 NO3 A 1 209 212 NO3 NO3 . K 6 NO3 A 1 210 213 NO3 NO3 . L 6 NO3 A 1 211 214 NO3 NO3 . M 6 NO3 A 1 212 215 NO3 NO3 . N 6 NO3 A 1 213 216 NO3 NO3 . O 6 NO3 A 1 214 217 NO3 NO3 . P 6 NO3 A 1 215 218 NO3 NO3 . Q 7 ACT A 1 216 219 ACT ACT . R 8 HOH A 1 301 123 HOH HOH . R 8 HOH A 2 302 214 HOH HOH . R 8 HOH A 3 303 117 HOH HOH . R 8 HOH A 4 304 70 HOH HOH . R 8 HOH A 5 305 142 HOH HOH . R 8 HOH A 6 306 34 HOH HOH . R 8 HOH A 7 307 115 HOH HOH . R 8 HOH A 8 308 136 HOH HOH . R 8 HOH A 9 309 61 HOH HOH . R 8 HOH A 10 310 76 HOH HOH . R 8 HOH A 11 311 140 HOH HOH . R 8 HOH A 12 312 17 HOH HOH . R 8 HOH A 13 313 68 HOH HOH . R 8 HOH A 14 314 97 HOH HOH . R 8 HOH A 15 315 83 HOH HOH . R 8 HOH A 16 316 145 HOH HOH . R 8 HOH A 17 317 40 HOH HOH . R 8 HOH A 18 318 29 HOH HOH . R 8 HOH A 19 319 143 HOH HOH . R 8 HOH A 20 320 85 HOH HOH . R 8 HOH A 21 321 86 HOH HOH . R 8 HOH A 22 322 77 HOH HOH . R 8 HOH A 23 323 31 HOH HOH . R 8 HOH A 24 324 206 HOH HOH . R 8 HOH A 25 325 99 HOH HOH . R 8 HOH A 26 326 22 HOH HOH . R 8 HOH A 27 327 218 HOH HOH . R 8 HOH A 28 328 2 HOH HOH . R 8 HOH A 29 329 28 HOH HOH . R 8 HOH A 30 330 14 HOH HOH . R 8 HOH A 31 331 65 HOH HOH . R 8 HOH A 32 332 15 HOH HOH . R 8 HOH A 33 333 112 HOH HOH . R 8 HOH A 34 334 63 HOH HOH . R 8 HOH A 35 335 106 HOH HOH . R 8 HOH A 36 336 60 HOH HOH . R 8 HOH A 37 337 90 HOH HOH . R 8 HOH A 38 338 132 HOH HOH . R 8 HOH A 39 339 38 HOH HOH . R 8 HOH A 40 340 18 HOH HOH . R 8 HOH A 41 341 49 HOH HOH . R 8 HOH A 42 342 59 HOH HOH . R 8 HOH A 43 343 80 HOH HOH . R 8 HOH A 44 344 66 HOH HOH . R 8 HOH A 45 345 87 HOH HOH . R 8 HOH A 46 346 69 HOH HOH . R 8 HOH A 47 347 72 HOH HOH . R 8 HOH A 48 348 8 HOH HOH . R 8 HOH A 49 349 9 HOH HOH . R 8 HOH A 50 350 73 HOH HOH . R 8 HOH A 51 351 96 HOH HOH . R 8 HOH A 52 352 42 HOH HOH . R 8 HOH A 53 353 155 HOH HOH . R 8 HOH A 54 354 178 HOH HOH . R 8 HOH A 55 355 216 HOH HOH . R 8 HOH A 56 356 133 HOH HOH . R 8 HOH A 57 357 39 HOH HOH . R 8 HOH A 58 358 134 HOH HOH . R 8 HOH A 59 359 41 HOH HOH . R 8 HOH A 60 360 200 HOH HOH . R 8 HOH A 61 361 127 HOH HOH . R 8 HOH A 62 362 75 HOH HOH . R 8 HOH A 63 363 190 HOH HOH . R 8 HOH A 64 364 84 HOH HOH . R 8 HOH A 65 365 67 HOH HOH . R 8 HOH A 66 366 109 HOH HOH . R 8 HOH A 67 367 62 HOH HOH . R 8 HOH A 68 368 146 HOH HOH . R 8 HOH A 69 369 26 HOH HOH . R 8 HOH A 70 370 7 HOH HOH . R 8 HOH A 71 371 12 HOH HOH . R 8 HOH A 72 372 25 HOH HOH . R 8 HOH A 73 373 141 HOH HOH . R 8 HOH A 74 374 213 HOH HOH . R 8 HOH A 75 375 19 HOH HOH . R 8 HOH A 76 376 208 HOH HOH . R 8 HOH A 77 377 57 HOH HOH . R 8 HOH A 78 378 139 HOH HOH . R 8 HOH A 79 379 58 HOH HOH . R 8 HOH A 80 380 27 HOH HOH . R 8 HOH A 81 381 148 HOH HOH . R 8 HOH A 82 382 74 HOH HOH . R 8 HOH A 83 383 187 HOH HOH . R 8 HOH A 84 384 171 HOH HOH . R 8 HOH A 85 385 129 HOH HOH . R 8 HOH A 86 386 175 HOH HOH . R 8 HOH A 87 387 78 HOH HOH . R 8 HOH A 88 388 4 HOH HOH . R 8 HOH A 89 389 144 HOH HOH . R 8 HOH A 90 390 215 HOH HOH . R 8 HOH A 91 391 1 HOH HOH . R 8 HOH A 92 392 189 HOH HOH . R 8 HOH A 93 393 45 HOH HOH . R 8 HOH A 94 394 32 HOH HOH . R 8 HOH A 95 395 118 HOH HOH . R 8 HOH A 96 396 20 HOH HOH . R 8 HOH A 97 397 46 HOH HOH . R 8 HOH A 98 398 110 HOH HOH . R 8 HOH A 99 399 82 HOH HOH . R 8 HOH A 100 400 105 HOH HOH . R 8 HOH A 101 401 104 HOH HOH . R 8 HOH A 102 402 24 HOH HOH . R 8 HOH A 103 403 53 HOH HOH . R 8 HOH A 104 404 47 HOH HOH . R 8 HOH A 105 405 95 HOH HOH . R 8 HOH A 106 406 50 HOH HOH . R 8 HOH A 107 407 137 HOH HOH . R 8 HOH A 108 408 10 HOH HOH . R 8 HOH A 109 409 44 HOH HOH . R 8 HOH A 110 410 30 HOH HOH . R 8 HOH A 111 411 98 HOH HOH . R 8 HOH A 112 412 55 HOH HOH . R 8 HOH A 113 413 186 HOH HOH . R 8 HOH A 114 414 102 HOH HOH . R 8 HOH A 115 415 188 HOH HOH . R 8 HOH A 116 416 147 HOH HOH . R 8 HOH A 117 417 88 HOH HOH . R 8 HOH A 118 418 114 HOH HOH . R 8 HOH A 119 419 205 HOH HOH . R 8 HOH A 120 420 108 HOH HOH . R 8 HOH A 121 421 211 HOH HOH . R 8 HOH A 122 422 122 HOH HOH . R 8 HOH A 123 423 51 HOH HOH . R 8 HOH A 124 424 217 HOH HOH . R 8 HOH A 125 425 79 HOH HOH . R 8 HOH A 126 426 185 HOH HOH . R 8 HOH A 127 427 173 HOH HOH . R 8 HOH A 128 428 149 HOH HOH . R 8 HOH A 129 429 179 HOH HOH . R 8 HOH A 130 430 180 HOH HOH . R 8 HOH A 131 431 101 HOH HOH . R 8 HOH A 132 432 198 HOH HOH . R 8 HOH A 133 433 21 HOH HOH . R 8 HOH A 134 434 163 HOH HOH . R 8 HOH A 135 435 35 HOH HOH . R 8 HOH A 136 436 168 HOH HOH . R 8 HOH A 137 437 193 HOH HOH . R 8 HOH A 138 438 13 HOH HOH . R 8 HOH A 139 439 23 HOH HOH . R 8 HOH A 140 440 192 HOH HOH . R 8 HOH A 141 441 36 HOH HOH . R 8 HOH A 142 442 174 HOH HOH . R 8 HOH A 143 443 201 HOH HOH . R 8 HOH A 144 444 116 HOH HOH . R 8 HOH A 145 445 169 HOH HOH . R 8 HOH A 146 446 204 HOH HOH . R 8 HOH A 147 447 121 HOH HOH . R 8 HOH A 148 448 125 HOH HOH . R 8 HOH A 149 449 93 HOH HOH . R 8 HOH A 150 450 160 HOH HOH . R 8 HOH A 151 451 167 HOH HOH . R 8 HOH A 152 452 135 HOH HOH . R 8 HOH A 153 453 153 HOH HOH . R 8 HOH A 154 454 219 HOH HOH . R 8 HOH A 155 455 113 HOH HOH . R 8 HOH A 156 456 194 HOH HOH . R 8 HOH A 157 457 202 HOH HOH . R 8 HOH A 158 458 37 HOH HOH . R 8 HOH A 159 459 207 HOH HOH . R 8 HOH A 160 460 209 HOH HOH . R 8 HOH A 161 461 172 HOH HOH . R 8 HOH A 162 462 166 HOH HOH . R 8 HOH A 163 463 162 HOH HOH . R 8 HOH A 164 464 124 HOH HOH . R 8 HOH A 165 465 130 HOH HOH . R 8 HOH A 166 466 152 HOH HOH . R 8 HOH A 167 467 197 HOH HOH . R 8 HOH A 168 468 181 HOH HOH . R 8 HOH A 169 469 3 HOH HOH . R 8 HOH A 170 470 5 HOH HOH . R 8 HOH A 171 471 6 HOH HOH . R 8 HOH A 172 472 11 HOH HOH . R 8 HOH A 173 473 16 HOH HOH . R 8 HOH A 174 474 33 HOH HOH . R 8 HOH A 175 475 43 HOH HOH . R 8 HOH A 176 476 48 HOH HOH . R 8 HOH A 177 477 52 HOH HOH . R 8 HOH A 178 478 54 HOH HOH . R 8 HOH A 179 479 56 HOH HOH . R 8 HOH A 180 480 64 HOH HOH . R 8 HOH A 181 481 71 HOH HOH . R 8 HOH A 182 482 81 HOH HOH . R 8 HOH A 183 483 89 HOH HOH . R 8 HOH A 184 484 91 HOH HOH . R 8 HOH A 185 485 92 HOH HOH . R 8 HOH A 186 486 94 HOH HOH . R 8 HOH A 187 487 100 HOH HOH . R 8 HOH A 188 488 103 HOH HOH . R 8 HOH A 189 489 107 HOH HOH . R 8 HOH A 190 490 111 HOH HOH . R 8 HOH A 191 491 119 HOH HOH . R 8 HOH A 192 492 120 HOH HOH . R 8 HOH A 193 493 126 HOH HOH . R 8 HOH A 194 494 128 HOH HOH . R 8 HOH A 195 495 131 HOH HOH . R 8 HOH A 196 496 138 HOH HOH . R 8 HOH A 197 497 150 HOH HOH . R 8 HOH A 198 498 151 HOH HOH . R 8 HOH A 199 499 154 HOH HOH . R 8 HOH A 200 500 156 HOH HOH . R 8 HOH A 201 501 157 HOH HOH . R 8 HOH A 202 502 158 HOH HOH . R 8 HOH A 203 503 159 HOH HOH . R 8 HOH A 204 504 161 HOH HOH . R 8 HOH A 205 505 164 HOH HOH . R 8 HOH A 206 506 165 HOH HOH . R 8 HOH A 207 507 170 HOH HOH . R 8 HOH A 208 508 176 HOH HOH . R 8 HOH A 209 509 177 HOH HOH . R 8 HOH A 210 510 191 HOH HOH . R 8 HOH A 211 511 195 HOH HOH . R 8 HOH A 212 512 196 HOH HOH . R 8 HOH A 213 513 199 HOH HOH . R 8 HOH A 214 514 203 HOH HOH . R 8 HOH A 215 515 210 HOH HOH . R 8 HOH A 216 516 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . A . G 4 36.074 -0.387 17.186 0.5 11.35 ? C1 EDO 206 A 1 HETATM 2 C C1 EDO . B . G 4 33.816 -0.236 15.563 0.5 7.62 ? C1 EDO 206 A 1 HETATM 3 O O1 EDO . A . G 4 35.14 -0.654 16.116 0.5 11.75 ? O1 EDO 206 A 1 HETATM 4 O O1 EDO . B . G 4 32.879 -0.438 14.494 0.5 9.27 ? O1 EDO 206 A 1 HETATM 5 C C2 EDO . A . G 4 35.382 0.201 18.425 0.5 10.74 ? C2 EDO 206 A 1 HETATM 6 C C2 EDO . B . G 4 35.185 -0.839 15.857 0.5 10.43 ? C2 EDO 206 A 1 HETATM 7 O O2 EDO . A . G 4 35.643 1.521 18.854 0.5 12.45 ? O2 EDO 206 A 1 HETATM 8 O O2 EDO . B . G 4 35.894 -0.458 17.073 0.5 12.96 ? O2 EDO 206 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 1038 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 8 #