data_4YFK
#
_model_server_result.job_id            '_EJAS8oAZWweM9DGcdETcg' 
_model_server_result.datetime_utc      '2024-12-21 12:13:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yfk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":2004}' 
#
_entry.id    4YFK 
#
_exptl.entry_id    4YFK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              443.516 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,5-dimethyl-N-{2-[4-(4-methylbenzyl)piperidin-1-yl]-3,4-dioxocyclobut-1-en-1-yl}-1,2-oxazole-4-sulfonamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YFK 
_cell.length_a            186.105 
_cell.length_b            206.438 
_cell.length_c            307.993 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YFK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,P,Q 1 1 
G,H,I,J,K,L,R,S,T,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 Q N N 
? 8 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OE1 GLU 813 C GLU 813 1_555 M MG MG . C MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc2 M MG MG . C MG 1401 1_555 D O ALA 459 D ALA 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? 
metalc ? metalc3 M MG MG . C MG 1401 1_555 D OD2 ASP 460 D ASP 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
metalc ? metalc4 D SG CYS 70 D CYS 70 1_555 O ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc5 D SG CYS 72 D CYS 72 1_555 O ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc6 D SG CYS 85 D CYS 85 1_555 O ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc7 D OD1 ASP 462 D ASP 462 1_555 N MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc8 D OD2 ASP 462 D ASP 462 1_555 N MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc9 D OD1 ASP 464 D ASP 464 1_555 N MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
metalc ? metalc10 D SG CYS 814 D CYS 814 1_555 P ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc11 D SG CYS 888 D CYS 888 1_555 P ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc12 D SG CYS 895 D CYS 895 1_555 P ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc13 D SG CYS 898 D CYS 898 1_555 P ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc14 I OE1 GLU 813 I GLU 813 1_555 R MG MG . I MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? 
metalc ? metalc15 J SG CYS 70 J CYS 70 1_555 T ZN ZN . J ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc16 J SG CYS 72 J CYS 72 1_555 T ZN ZN . J ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc17 J SG CYS 85 J CYS 85 1_555 T ZN ZN . J ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc18 J OD1 ASP 462 J ASP 462 1_555 S MG MG . J MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc19 J OD2 ASP 462 J ASP 462 1_555 S MG MG . J MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc20 J OD1 ASP 464 J ASP 464 1_555 S MG MG . J MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc21 J OD2 ASP 464 J ASP 464 1_555 S MG MG . J MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc22 J SG CYS 814 J CYS 814 1_555 U ZN ZN . J ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc23 J SG CYS 888 J CYS 888 1_555 U ZN ZN . J ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc24 J SG CYS 895 J CYS 895 1_555 U ZN ZN . J ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc25 J SG CYS 898 J CYS 898 1_555 U ZN ZN . J ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
#
_chem_comp.formula           'C22 H25 N3 O5 S' 
_chem_comp.formula_weight    443.516 
_chem_comp.id                4C6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,5-dimethyl-N-{2-[4-(4-methylbenzyl)piperidin-1-yl]-3,4-dioxocyclobut-1-en-1-yl}-1,2-oxazole-4-sulfonamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C5 4C6 sing 1 n n 
C5 N1 4C6 doub 2 n y 
C5 C2 4C6 sing 3 n y 
N1 O1 4C6 sing 4 n y 
O C 4C6 doub 5 n n 
O2 S 4C6 doub 6 n n 
C2 S 4C6 sing 7 n n 
C2 C3 4C6 doub 8 n y 
O1 C3 4C6 sing 9 n y 
S O3 4C6 doub 10 n n 
S N 4C6 sing 11 n n 
C C21 4C6 sing 12 n n 
C C1 4C6 sing 13 n n 
C3 C4 4C6 sing 14 n n 
O4 C21 4C6 doub 15 n n 
C21 C7 4C6 sing 16 n n 
C1 N 4C6 sing 17 n n 
C1 C7 4C6 doub 18 n n 
C7 N2 4C6 sing 19 n n 
N2 C20 4C6 sing 20 n n 
N2 C8 4C6 sing 21 n n 
C20 C19 4C6 sing 22 n n 
C8 C9 4C6 sing 23 n n 
C19 C10 4C6 sing 24 n n 
C9 C10 4C6 sing 25 n n 
C10 C11 4C6 sing 26 n n 
C11 C12 4C6 sing 27 n n 
C13 C12 4C6 doub 28 n y 
C13 C14 4C6 sing 29 n y 
C12 C18 4C6 sing 30 n y 
C14 C15 4C6 doub 31 n y 
C18 C17 4C6 doub 32 n y 
C15 C17 4C6 sing 33 n y 
C15 C16 4C6 sing 34 n n 
C8 H1 4C6 sing 35 n n 
C8 H2 4C6 sing 36 n n 
C9 H3 4C6 sing 37 n n 
C9 H4 4C6 sing 38 n n 
C10 H5 4C6 sing 39 n n 
C11 H6 4C6 sing 40 n n 
C11 H7 4C6 sing 41 n n 
C13 H8 4C6 sing 42 n n 
C14 H9 4C6 sing 43 n n 
C16 H10 4C6 sing 44 n n 
C16 H11 4C6 sing 45 n n 
C16 H12 4C6 sing 46 n n 
C19 H13 4C6 sing 47 n n 
C19 H14 4C6 sing 48 n n 
C20 H15 4C6 sing 49 n n 
C20 H16 4C6 sing 50 n n 
N H17 4C6 sing 51 n n 
C6 H18 4C6 sing 52 n n 
C6 H19 4C6 sing 53 n n 
C6 H20 4C6 sing 54 n n 
C4 H21 4C6 sing 55 n n 
C4 H22 4C6 sing 56 n n 
C4 H23 4C6 sing 57 n n 
C18 H24 4C6 sing 58 n n 
C17 H25 4C6 sing 59 n n 
#
_atom_sites.entry_id                     4YFK 
_atom_sites.fract_transf_matrix[1][1]    0.005373 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004844 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003247 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 6 MG C 1 1401 2002 MG MG . 
N 6 MG D 1 2001 2001 MG MG . 
O 7 ZN D 1 2002 2101 ZN ZN . 
P 7 ZN D 1 2003 2102 ZN ZN . 
Q 8 4C6 D 1 2004 3001 4C6 INH . 
R 6 MG I 1 1401 2002 MG MG . 
S 6 MG J 1 2001 2001 MG MG . 
T 7 ZN J 1 2002 2101 ZN ZN . 
U 7 ZN J 1 2003 2102 ZN ZN . 
V 8 4C6 J 1 2004 3001 4C6 INH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 4C6 . . . Q 8 -85.642 25.874 22.804 1 127.11 ? C1 4C6 2004 D 1 
HETATM 2 C C2 4C6 . . . Q 8 -84.12 23.683 21.053 1 127.11 ? C2 4C6 2004 D 1 
HETATM 3 C C3 4C6 . . . Q 8 -84.086 22.543 21.86 1 127.11 ? C3 4C6 2004 D 1 
HETATM 4 O O4 4C6 . . . Q 8 -88.824 26.648 22.694 1 127.11 ? O4 4C6 2004 D 1 
HETATM 5 C C7 4C6 . . . Q 8 -86.606 26.303 23.736 1 127.11 ? C7 4C6 2004 D 1 
HETATM 6 C C8 4C6 . . . Q 8 -85.477 26.871 25.821 1 127.11 ? C8 4C6 2004 D 1 
HETATM 7 C C9 4C6 . . . Q 8 -85.582 26.245 27.188 1 127.11 ? C9 4C6 2004 D 1 
HETATM 8 C C10 4C6 . . . Q 8 -86.833 26.642 27.934 1 127.11 ? C10 4C6 2004 D 1 
HETATM 9 C C11 4C6 . . . Q 8 -86.942 25.905 29.275 1 127.11 ? C11 4C6 2004 D 1 
HETATM 10 C C12 4C6 . . . Q 8 -85.841 26.217 30.244 1 127.11 ? C12 4C6 2004 D 1 
HETATM 11 C C13 4C6 . . . Q 8 -84.607 25.603 30.124 1 127.11 ? C13 4C6 2004 D 1 
HETATM 12 C C14 4C6 . . . Q 8 -83.584 25.911 30.992 1 127.11 ? C14 4C6 2004 D 1 
HETATM 13 C C15 4C6 . . . Q 8 -83.764 26.829 32.024 1 127.11 ? C15 4C6 2004 D 1 
HETATM 14 C C16 4C6 . . . Q 8 -82.643 27.147 32.982 1 127.11 ? C16 4C6 2004 D 1 
HETATM 15 C C19 4C6 . . . Q 8 -88.045 26.37 27.044 1 127.11 ? C19 4C6 2004 D 1 
HETATM 16 C C20 4C6 . . . Q 8 -87.881 27.009 25.667 1 127.11 ? C20 4C6 2004 D 1 
HETATM 17 C C21 4C6 . . . Q 8 -87.645 26.359 22.72 1 127.11 ? C21 4C6 2004 D 1 
HETATM 18 C C 4C6 . . . Q 8 -86.626 25.901 21.721 1 127.11 ? C 4C6 2004 D 1 
HETATM 19 O O 4C6 . . . Q 8 -86.619 25.659 20.535 1 127.11 ? O 4C6 2004 D 1 
HETATM 20 N N 4C6 . . . Q 8 -84.276 25.536 22.886 1 127.11 ? N 4C6 2004 D 1 
HETATM 21 S S 4C6 . . . Q 8 -83.382 25.109 21.634 1 127.11 ? S 4C6 2004 D 1 
HETATM 22 O O2 4C6 . . . Q 8 -83.617 26.104 20.648 1 127.11 ? O2 4C6 2004 D 1 
HETATM 23 O O3 4C6 . . . Q 8 -82.043 24.82 22.025 1 127.11 ? O3 4C6 2004 D 1 
HETATM 24 C C5 4C6 . . . Q 8 -84.615 23.246 19.817 1 127.11 ? C5 4C6 2004 D 1 
HETATM 25 C C6 4C6 . . . Q 8 -84.802 24.029 18.561 1 127.11 ? C6 4C6 2004 D 1 
HETATM 26 N N1 4C6 . . . Q 8 -84.997 22.005 19.877 1 127.11 ? N1 4C6 2004 D 1 
HETATM 27 O O1 4C6 . . . Q 8 -84.69 21.559 21.193 1 127.11 ? O1 4C6 2004 D 1 
HETATM 28 C C4 4C6 . . . Q 8 -83.732 22.302 23.251 1 127.11 ? C4 4C6 2004 D 1 
HETATM 29 N N2 4C6 . . . Q 8 -86.649 26.569 25.011 1 127.11 ? N2 4C6 2004 D 1 
HETATM 30 C C18 4C6 . . . Q 8 -86.039 27.134 31.267 1 127.11 ? C18 4C6 2004 D 1 
HETATM 31 C C17 4C6 . . . Q 8 -85.021 27.431 32.147 1 127.11 ? C17 4C6 2004 D 1 
#
_model_server_stats.io_time_ms              118 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    85 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#