data_4YFK # _model_server_result.job_id LE5-aGX28mwV-hNX3BmT0g _model_server_result.datetime_utc '2024-12-21 12:01:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yfk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":2004}' # _entry.id 4YFK # _exptl.entry_id 4YFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.516 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5-dimethyl-N-{2-[4-(4-methylbenzyl)piperidin-1-yl]-3,4-dioxocyclobut-1-en-1-yl}-1,2-oxazole-4-sulfonamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YFK _cell.length_a 186.105 _cell.length_b 206.438 _cell.length_c 307.993 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P,Q 1 1 G,H,I,J,K,L,R,S,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 Q N N ? 8 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OE1 GLU 813 C GLU 813 1_555 M MG MG . C MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc2 M MG MG . C MG 1401 1_555 D O ALA 459 D ALA 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc3 M MG MG . C MG 1401 1_555 D OD2 ASP 460 D ASP 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc4 D SG CYS 70 D CYS 70 1_555 O ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc5 D SG CYS 72 D CYS 72 1_555 O ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc6 D SG CYS 85 D CYS 85 1_555 O ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc7 D OD1 ASP 462 D ASP 462 1_555 N MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc8 D OD2 ASP 462 D ASP 462 1_555 N MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc9 D OD1 ASP 464 D ASP 464 1_555 N MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc10 D SG CYS 814 D CYS 814 1_555 P ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc11 D SG CYS 888 D CYS 888 1_555 P ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc12 D SG CYS 895 D CYS 895 1_555 P ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc13 D SG CYS 898 D CYS 898 1_555 P ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc14 I OE1 GLU 813 I GLU 813 1_555 R MG MG . I MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc15 J SG CYS 70 J CYS 70 1_555 T ZN ZN . J ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc16 J SG CYS 72 J CYS 72 1_555 T ZN ZN . J ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc17 J SG CYS 85 J CYS 85 1_555 T ZN ZN . J ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc18 J OD1 ASP 462 J ASP 462 1_555 S MG MG . J MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc19 J OD2 ASP 462 J ASP 462 1_555 S MG MG . J MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc20 J OD1 ASP 464 J ASP 464 1_555 S MG MG . J MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc21 J OD2 ASP 464 J ASP 464 1_555 S MG MG . J MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc22 J SG CYS 814 J CYS 814 1_555 U ZN ZN . J ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc23 J SG CYS 888 J CYS 888 1_555 U ZN ZN . J ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc24 J SG CYS 895 J CYS 895 1_555 U ZN ZN . J ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc25 J SG CYS 898 J CYS 898 1_555 U ZN ZN . J ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? # _chem_comp.formula 'C22 H25 N3 O5 S' _chem_comp.formula_weight 443.516 _chem_comp.id 4C6 _chem_comp.mon_nstd_flag . _chem_comp.name 3,5-dimethyl-N-{2-[4-(4-methylbenzyl)piperidin-1-yl]-3,4-dioxocyclobut-1-en-1-yl}-1,2-oxazole-4-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C5 4C6 sing 1 n n C5 N1 4C6 doub 2 n y C5 C2 4C6 sing 3 n y N1 O1 4C6 sing 4 n y O C 4C6 doub 5 n n O2 S 4C6 doub 6 n n C2 S 4C6 sing 7 n n C2 C3 4C6 doub 8 n y O1 C3 4C6 sing 9 n y S O3 4C6 doub 10 n n S N 4C6 sing 11 n n C C21 4C6 sing 12 n n C C1 4C6 sing 13 n n C3 C4 4C6 sing 14 n n O4 C21 4C6 doub 15 n n C21 C7 4C6 sing 16 n n C1 N 4C6 sing 17 n n C1 C7 4C6 doub 18 n n C7 N2 4C6 sing 19 n n N2 C20 4C6 sing 20 n n N2 C8 4C6 sing 21 n n C20 C19 4C6 sing 22 n n C8 C9 4C6 sing 23 n n C19 C10 4C6 sing 24 n n C9 C10 4C6 sing 25 n n C10 C11 4C6 sing 26 n n C11 C12 4C6 sing 27 n n C13 C12 4C6 doub 28 n y C13 C14 4C6 sing 29 n y C12 C18 4C6 sing 30 n y C14 C15 4C6 doub 31 n y C18 C17 4C6 doub 32 n y C15 C17 4C6 sing 33 n y C15 C16 4C6 sing 34 n n C8 H1 4C6 sing 35 n n C8 H2 4C6 sing 36 n n C9 H3 4C6 sing 37 n n C9 H4 4C6 sing 38 n n C10 H5 4C6 sing 39 n n C11 H6 4C6 sing 40 n n C11 H7 4C6 sing 41 n n C13 H8 4C6 sing 42 n n C14 H9 4C6 sing 43 n n C16 H10 4C6 sing 44 n n C16 H11 4C6 sing 45 n n C16 H12 4C6 sing 46 n n C19 H13 4C6 sing 47 n n C19 H14 4C6 sing 48 n n C20 H15 4C6 sing 49 n n C20 H16 4C6 sing 50 n n N H17 4C6 sing 51 n n C6 H18 4C6 sing 52 n n C6 H19 4C6 sing 53 n n C6 H20 4C6 sing 54 n n C4 H21 4C6 sing 55 n n C4 H22 4C6 sing 56 n n C4 H23 4C6 sing 57 n n C18 H24 4C6 sing 58 n n C17 H25 4C6 sing 59 n n # _atom_sites.entry_id 4YFK _atom_sites.fract_transf_matrix[1][1] 0.005373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 6 MG C 1 1401 2002 MG MG . N 6 MG D 1 2001 2001 MG MG . O 7 ZN D 1 2002 2101 ZN ZN . P 7 ZN D 1 2003 2102 ZN ZN . Q 8 4C6 D 1 2004 3001 4C6 INH . R 6 MG I 1 1401 2002 MG MG . S 6 MG J 1 2001 2001 MG MG . T 7 ZN J 1 2002 2101 ZN ZN . U 7 ZN J 1 2003 2102 ZN ZN . V 8 4C6 J 1 2004 3001 4C6 INH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4C6 . . . V 8 -46.508 -39.589 44.685 1 127.11 ? C1 4C6 2004 J 1 HETATM 2 C C2 4C6 . . . V 8 -45.626 -37.138 42.674 1 127.11 ? C2 4C6 2004 J 1 HETATM 3 C C3 4C6 . . . V 8 -46.27 -35.991 43.071 1 127.11 ? C3 4C6 2004 J 1 HETATM 4 O O4 4C6 . . . V 8 -44.941 -40.515 47.413 1 141.73 ? O4 4C6 2004 J 1 HETATM 5 C C7 4C6 . . . V 8 -46.899 -40.13 45.895 1 128.66 ? C7 4C6 2004 J 1 HETATM 6 C C8 4C6 . . . V 8 -49.244 -40.94 45.859 1 127.11 ? C8 4C6 2004 J 1 HETATM 7 C C9 4C6 . . . V 8 -50.5 -40.337 46.464 1 127.11 ? C9 4C6 2004 J 1 HETATM 8 C C10 4C6 . . . V 8 -50.6 -40.605 47.945 1 127.11 ? C10 4C6 2004 J 1 HETATM 9 C C11 4C6 . . . V 8 -51.771 -39.842 48.573 1 127.11 ? C11 4C6 2004 J 1 HETATM 10 C C12 4C6 . . . V 8 -53.117 -40.174 47.999 1 127.11 ? C12 4C6 2004 J 1 HETATM 11 C C13 4C6 . . . V 8 -53.61 -39.484 46.908 1 127.11 ? C13 4C6 2004 J 1 HETATM 12 C C14 4C6 . . . V 8 -54.858 -39.777 46.4 1 127.11 ? C14 4C6 2004 J 1 HETATM 13 C C15 4C6 . . . V 8 -55.663 -40.754 46.977 1 127.11 ? C15 4C6 2004 J 1 HETATM 14 C C16 4C6 . . . V 8 -57.028 -41.068 46.412 1 127.11 ? C16 4C6 2004 J 1 HETATM 15 C C19 4C6 . . . V 8 -49.279 -40.234 48.621 1 127.11 ? C19 4C6 2004 J 1 HETATM 16 C C20 4C6 . . . V 8 -48.079 -40.843 47.93 1 127.11 ? C20 4C6 2004 J 1 HETATM 17 C C21 4C6 . . . V 8 -45.488 -40.209 46.394 1 133.31 ? C21 4C6 2004 J 1 HETATM 18 C C 4C6 . . . V 8 -45.112 -39.661 45.044 1 128.14 ? C 4C6 2004 J 1 HETATM 19 O O 4C6 . . . V 8 -44.007 -39.34 44.529 1 127.59 ? O 4C6 2004 J 1 HETATM 20 N N 4C6 . . . V 8 -47.17 -39.207 43.483 1 127.11 ? N 4C6 2004 J 1 HETATM 21 S S 4C6 . . . V 8 -46.354 -38.66 42.195 1 127.11 ? S 4C6 2004 J 1 HETATM 22 O O2 4C6 . . . V 8 -45.301 -39.6 41.978 1 127.11 ? O2 4C6 2004 J 1 HETATM 23 O O3 4C6 . . . V 8 -47.387 -38.495 41.227 1 127.11 ? O3 4C6 2004 J 1 HETATM 24 C C5 4C6 . . . V 8 -44.254 -36.808 42.716 1 127.11 ? C5 4C6 2004 J 1 HETATM 25 C C6 4C6 . . . V 8 -43.078 -37.662 42.379 1 127.11 ? C6 4C6 2004 J 1 HETATM 26 N N1 4C6 . . . V 8 -44.069 -35.578 43.101 1 127.11 ? N1 4C6 2004 J 1 HETATM 27 O O1 4C6 . . . V 8 -45.354 -35.046 43.329 1 127.11 ? O1 4C6 2004 J 1 HETATM 28 C C4 4C6 . . . V 8 -47.685 -35.612 43.257 1 127.11 ? C4 4C6 2004 J 1 HETATM 29 N N2 4C6 . . . V 8 -48.046 -40.444 46.525 1 127.11 ? N2 4C6 2004 J 1 HETATM 30 C C18 4C6 . . . V 8 -53.918 -41.133 48.599 1 127.11 ? C18 4C6 2004 J 1 HETATM 31 C C17 4C6 . . . V 8 -55.17 -41.42 48.094 1 127.11 ? C17 4C6 2004 J 1 # _model_server_stats.io_time_ms 136 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 431 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #