data_4YG2 # _model_server_result.job_id OQLQJqu150U_-CP0b2LYMg _model_server_result.datetime_utc '2024-11-24 14:38:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yg2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":2001}' # _entry.id 4YG2 # _exptl.entry_id 4YG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YG2 _cell.length_a 187.308 _cell.length_b 205.901 _cell.length_c 309.185 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P 1 1 G,H,I,J,K,L,Q,R,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 N N N ? 6 Q N N ? 6 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OE1 GLU 813 C GLU 813 1_555 M MG MG . C MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc2 M MG MG . C MG 1401 1_555 D O ALA 459 D ALA 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc3 M MG MG . C MG 1401 1_555 D OD2 ASP 460 D ASP 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? metalc ? metalc4 D SG CYS 70 D CYS 70 1_555 O ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc5 D SG CYS 72 D CYS 72 1_555 O ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc6 D SG CYS 85 D CYS 85 1_555 O ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc7 D SG CYS 88 D CYS 88 1_555 O ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc8 D OD1 ASP 462 D ASP 462 1_555 N MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc9 D OD2 ASP 462 D ASP 462 1_555 N MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc10 D SG CYS 814 D CYS 814 1_555 P ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc11 D SG CYS 888 D CYS 888 1_555 P ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc12 D SG CYS 895 D CYS 895 1_555 P ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc13 D SG CYS 898 D CYS 898 1_555 P ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc14 I OE2 GLU 813 I GLU 813 1_555 Q MG MG . I MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc15 Q MG MG . I MG 1401 1_555 J OD2 ASP 460 J ASP 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc16 J SG CYS 70 J CYS 70 1_555 S ZN ZN . J ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc17 J SG CYS 72 J CYS 72 1_555 S ZN ZN . J ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc18 J SG CYS 85 J CYS 85 1_555 S ZN ZN . J ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc19 J OD1 ASP 462 J ASP 462 1_555 R MG MG . J MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc20 J OD2 ASP 462 J ASP 462 1_555 R MG MG . J MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc21 J OD1 ASP 464 J ASP 464 1_555 R MG MG . J MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc22 J SG CYS 814 J CYS 814 1_555 T ZN ZN . J ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc23 J SG CYS 888 J CYS 888 1_555 T ZN ZN . J ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc24 J SG CYS 895 J CYS 895 1_555 T ZN ZN . J ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc25 J SG CYS 898 J CYS 898 1_555 T ZN ZN . J ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YG2 _atom_sites.fract_transf_matrix[1][1] 0.005339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 6 MG C 1 1401 2002 MG MG . N 6 MG D 1 2001 2001 MG MG . O 7 ZN D 1 2002 2101 ZN ZN . P 7 ZN D 1 2003 2102 ZN ZN . Q 6 MG I 1 1401 2002 MG MG . R 6 MG J 1 2001 2001 MG MG . S 7 ZN J 1 2002 2101 ZN ZN . T 7 ZN J 1 2003 2102 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 6 _atom_site.Cartn_x 100.821 _atom_site.Cartn_y 14.568 _atom_site.Cartn_z -0.822 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 94.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 2001 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 93 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #