data_4YGK # _model_server_result.job_id 7uIOFVJFrfaz_BcJIbsD1g _model_server_result.datetime_utc '2024-11-17 19:31:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ygk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YGK # _exptl.entry_id 4YGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.7 _cell.angle_gamma 90 _cell.entry_id 4YGK _cell.length_a 42.391 _cell.length_b 41.346 _cell.length_c 72.912 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 92 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 A NE2 HIS 94 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc3 A ND1 HIS 117 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N SCN . A SCN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc5 B ZN ZN . A ZN 301 1_555 D O OH . A OH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YGK _atom_sites.fract_transf_matrix[1][1] 0.02359 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006187 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 3 SCN A 1 302 1 SCN SCN . D 4 OH A 1 303 1 OH O . E 5 HOH A 1 401 116 HOH HOH . E 5 HOH A 2 402 221 HOH HOH . E 5 HOH A 3 403 136 HOH HOH . E 5 HOH A 4 404 75 HOH HOH . E 5 HOH A 5 405 139 HOH HOH . E 5 HOH A 6 406 191 HOH HOH . E 5 HOH A 7 407 29 HOH HOH . E 5 HOH A 8 408 183 HOH HOH . E 5 HOH A 9 409 165 HOH HOH . E 5 HOH A 10 410 60 HOH HOH . E 5 HOH A 11 411 3 HOH HOH . E 5 HOH A 12 412 218 HOH HOH . E 5 HOH A 13 413 151 HOH HOH . E 5 HOH A 14 414 224 HOH HOH . E 5 HOH A 15 415 9 HOH HOH . E 5 HOH A 16 416 219 HOH HOH . E 5 HOH A 17 417 222 HOH HOH . E 5 HOH A 18 418 123 HOH HOH . E 5 HOH A 19 419 137 HOH HOH . E 5 HOH A 20 420 17 HOH HOH . E 5 HOH A 21 421 200 HOH HOH . E 5 HOH A 22 422 47 HOH HOH . E 5 HOH A 23 423 172 HOH HOH . E 5 HOH A 24 424 55 HOH HOH . E 5 HOH A 25 425 20 HOH HOH . E 5 HOH A 26 426 58 HOH HOH . E 5 HOH A 27 427 228 HOH HOH . E 5 HOH A 28 428 98 HOH HOH . E 5 HOH A 29 429 187 HOH HOH . E 5 HOH A 30 430 36 HOH HOH . E 5 HOH A 31 431 104 HOH HOH . E 5 HOH A 32 432 102 HOH HOH . E 5 HOH A 33 433 215 HOH HOH . E 5 HOH A 34 434 162 HOH HOH . E 5 HOH A 35 435 92 HOH HOH . E 5 HOH A 36 436 125 HOH HOH . E 5 HOH A 37 437 59 HOH HOH . E 5 HOH A 38 438 141 HOH HOH . E 5 HOH A 39 439 64 HOH HOH . E 5 HOH A 40 440 70 HOH HOH . E 5 HOH A 41 441 61 HOH HOH . E 5 HOH A 42 442 103 HOH HOH . E 5 HOH A 43 443 33 HOH HOH . E 5 HOH A 44 444 132 HOH HOH . E 5 HOH A 45 445 227 HOH HOH . E 5 HOH A 46 446 21 HOH HOH . E 5 HOH A 47 447 148 HOH HOH . E 5 HOH A 48 448 25 HOH HOH . E 5 HOH A 49 449 150 HOH HOH . E 5 HOH A 50 450 65 HOH HOH . E 5 HOH A 51 451 140 HOH HOH . E 5 HOH A 52 452 97 HOH HOH . E 5 HOH A 53 453 157 HOH HOH . E 5 HOH A 54 454 184 HOH HOH . E 5 HOH A 55 455 41 HOH HOH . E 5 HOH A 56 456 110 HOH HOH . E 5 HOH A 57 457 26 HOH HOH . E 5 HOH A 58 458 217 HOH HOH . E 5 HOH A 59 459 127 HOH HOH . E 5 HOH A 60 460 96 HOH HOH . E 5 HOH A 61 461 135 HOH HOH . E 5 HOH A 62 462 190 HOH HOH . E 5 HOH A 63 463 169 HOH HOH . E 5 HOH A 64 464 100 HOH HOH . E 5 HOH A 65 465 77 HOH HOH . E 5 HOH A 66 466 138 HOH HOH . E 5 HOH A 67 467 106 HOH HOH . E 5 HOH A 68 468 208 HOH HOH . E 5 HOH A 69 469 180 HOH HOH . E 5 HOH A 70 470 101 HOH HOH . E 5 HOH A 71 471 121 HOH HOH . E 5 HOH A 72 472 94 HOH HOH . E 5 HOH A 73 473 171 HOH HOH . E 5 HOH A 74 474 107 HOH HOH . E 5 HOH A 75 475 27 HOH HOH . E 5 HOH A 76 476 78 HOH HOH . E 5 HOH A 77 477 202 HOH HOH . E 5 HOH A 78 478 158 HOH HOH . E 5 HOH A 79 479 159 HOH HOH . E 5 HOH A 80 480 147 HOH HOH . E 5 HOH A 81 481 175 HOH HOH . E 5 HOH A 82 482 28 HOH HOH . E 5 HOH A 83 483 179 HOH HOH . E 5 HOH A 84 484 129 HOH HOH . E 5 HOH A 85 485 39 HOH HOH . E 5 HOH A 86 486 119 HOH HOH . E 5 HOH A 87 487 186 HOH HOH . E 5 HOH A 88 488 164 HOH HOH . E 5 HOH A 89 489 111 HOH HOH . E 5 HOH A 90 490 212 HOH HOH . E 5 HOH A 91 491 207 HOH HOH . E 5 HOH A 92 492 74 HOH HOH . E 5 HOH A 93 493 120 HOH HOH . E 5 HOH A 94 494 115 HOH HOH . E 5 HOH A 95 495 161 HOH HOH . E 5 HOH A 96 496 153 HOH HOH . E 5 HOH A 97 497 192 HOH HOH . E 5 HOH A 98 498 71 HOH HOH . E 5 HOH A 99 499 193 HOH HOH . E 5 HOH A 100 500 142 HOH HOH . E 5 HOH A 101 501 91 HOH HOH . E 5 HOH A 102 502 205 HOH HOH . E 5 HOH A 103 503 73 HOH HOH . E 5 HOH A 104 504 42 HOH HOH . E 5 HOH A 105 505 199 HOH HOH . E 5 HOH A 106 506 149 HOH HOH . E 5 HOH A 107 507 201 HOH HOH . E 5 HOH A 108 508 1 HOH HOH . E 5 HOH A 109 509 2 HOH HOH . E 5 HOH A 110 510 4 HOH HOH . E 5 HOH A 111 511 5 HOH HOH . E 5 HOH A 112 512 6 HOH HOH . E 5 HOH A 113 513 7 HOH HOH . E 5 HOH A 114 514 8 HOH HOH . E 5 HOH A 115 515 10 HOH HOH . E 5 HOH A 116 516 11 HOH HOH . E 5 HOH A 117 517 12 HOH HOH . E 5 HOH A 118 518 13 HOH HOH . E 5 HOH A 119 519 14 HOH HOH . E 5 HOH A 120 520 15 HOH HOH . E 5 HOH A 121 521 16 HOH HOH . E 5 HOH A 122 522 18 HOH HOH . E 5 HOH A 123 523 19 HOH HOH . E 5 HOH A 124 524 22 HOH HOH . E 5 HOH A 125 525 23 HOH HOH . E 5 HOH A 126 526 24 HOH HOH . E 5 HOH A 127 527 30 HOH HOH . E 5 HOH A 128 528 31 HOH HOH . E 5 HOH A 129 529 32 HOH HOH . E 5 HOH A 130 530 34 HOH HOH . E 5 HOH A 131 531 35 HOH HOH . E 5 HOH A 132 532 37 HOH HOH . E 5 HOH A 133 533 38 HOH HOH . E 5 HOH A 134 534 40 HOH HOH . E 5 HOH A 135 535 43 HOH HOH . E 5 HOH A 136 536 44 HOH HOH . E 5 HOH A 137 537 45 HOH HOH . E 5 HOH A 138 538 46 HOH HOH . E 5 HOH A 139 539 48 HOH HOH . E 5 HOH A 140 540 49 HOH HOH . E 5 HOH A 141 541 50 HOH HOH . E 5 HOH A 142 542 51 HOH HOH . E 5 HOH A 143 543 52 HOH HOH . E 5 HOH A 144 544 53 HOH HOH . E 5 HOH A 145 545 54 HOH HOH . E 5 HOH A 146 546 56 HOH HOH . E 5 HOH A 147 547 57 HOH HOH . E 5 HOH A 148 548 62 HOH HOH . E 5 HOH A 149 549 63 HOH HOH . E 5 HOH A 150 550 66 HOH HOH . E 5 HOH A 151 551 67 HOH HOH . E 5 HOH A 152 552 68 HOH HOH . E 5 HOH A 153 553 69 HOH HOH . E 5 HOH A 154 554 72 HOH HOH . E 5 HOH A 155 555 76 HOH HOH . E 5 HOH A 156 556 79 HOH HOH . E 5 HOH A 157 557 80 HOH HOH . E 5 HOH A 158 558 81 HOH HOH . E 5 HOH A 159 559 82 HOH HOH . E 5 HOH A 160 560 83 HOH HOH . E 5 HOH A 161 561 84 HOH HOH . E 5 HOH A 162 562 85 HOH HOH . E 5 HOH A 163 563 86 HOH HOH . E 5 HOH A 164 564 87 HOH HOH . E 5 HOH A 165 565 88 HOH HOH . E 5 HOH A 166 566 89 HOH HOH . E 5 HOH A 167 567 90 HOH HOH . E 5 HOH A 168 568 93 HOH HOH . E 5 HOH A 169 569 95 HOH HOH . E 5 HOH A 170 570 99 HOH HOH . E 5 HOH A 171 571 105 HOH HOH . E 5 HOH A 172 572 108 HOH HOH . E 5 HOH A 173 573 109 HOH HOH . E 5 HOH A 174 574 112 HOH HOH . E 5 HOH A 175 575 113 HOH HOH . E 5 HOH A 176 576 114 HOH HOH . E 5 HOH A 177 577 117 HOH HOH . E 5 HOH A 178 578 118 HOH HOH . E 5 HOH A 179 579 122 HOH HOH . E 5 HOH A 180 580 124 HOH HOH . E 5 HOH A 181 581 126 HOH HOH . E 5 HOH A 182 582 128 HOH HOH . E 5 HOH A 183 583 130 HOH HOH . E 5 HOH A 184 584 131 HOH HOH . E 5 HOH A 185 585 133 HOH HOH . E 5 HOH A 186 586 134 HOH HOH . E 5 HOH A 187 587 143 HOH HOH . E 5 HOH A 188 588 144 HOH HOH . E 5 HOH A 189 589 145 HOH HOH . E 5 HOH A 190 590 146 HOH HOH . E 5 HOH A 191 591 152 HOH HOH . E 5 HOH A 192 592 154 HOH HOH . E 5 HOH A 193 593 155 HOH HOH . E 5 HOH A 194 594 156 HOH HOH . E 5 HOH A 195 595 160 HOH HOH . E 5 HOH A 196 596 163 HOH HOH . E 5 HOH A 197 597 166 HOH HOH . E 5 HOH A 198 598 167 HOH HOH . E 5 HOH A 199 599 168 HOH HOH . E 5 HOH A 200 600 170 HOH HOH . E 5 HOH A 201 601 174 HOH HOH . E 5 HOH A 202 602 176 HOH HOH . E 5 HOH A 203 603 177 HOH HOH . E 5 HOH A 204 604 178 HOH HOH . E 5 HOH A 205 605 181 HOH HOH . E 5 HOH A 206 606 182 HOH HOH . E 5 HOH A 207 607 185 HOH HOH . E 5 HOH A 208 608 188 HOH HOH . E 5 HOH A 209 609 189 HOH HOH . E 5 HOH A 210 610 194 HOH HOH . E 5 HOH A 211 611 195 HOH HOH . E 5 HOH A 212 612 196 HOH HOH . E 5 HOH A 213 613 197 HOH HOH . E 5 HOH A 214 614 198 HOH HOH . E 5 HOH A 215 615 204 HOH HOH . E 5 HOH A 216 616 206 HOH HOH . E 5 HOH A 217 617 209 HOH HOH . E 5 HOH A 218 618 210 HOH HOH . E 5 HOH A 219 619 211 HOH HOH . E 5 HOH A 220 620 213 HOH HOH . E 5 HOH A 221 621 214 HOH HOH . E 5 HOH A 222 622 216 HOH HOH . E 5 HOH A 223 623 220 HOH HOH . E 5 HOH A 224 624 223 HOH HOH . E 5 HOH A 225 625 225 HOH HOH . E 5 HOH A 226 626 226 HOH HOH . E 5 HOH A 227 627 229 HOH HOH . E 5 HOH A 228 628 230 HOH HOH . E 5 HOH A 229 629 231 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.313 _atom_site.Cartn_y -1.562 _atom_site.Cartn_z 15.498 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 4.51 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #