data_4YGL
#
_model_server_result.job_id            q5V3jVuOQKpe9bDTSgYSBw 
_model_server_result.datetime_utc      '2024-11-17 17:32:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ygl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    4YGL 
#
_exptl.entry_id    4YGL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              99.451 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PERCHLORATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.45 
_cell.angle_gamma         90 
_cell.entry_id            4YGL 
_cell.length_a            42.138 
_cell.length_b            41.04 
_cell.length_c            72.878 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YGL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 92 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc2 A NE2 HIS 94 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc3 A ND1 HIS 117 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C O OH . A OH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'Cl O4 -1' 
_chem_comp.formula_weight    99.451 
_chem_comp.id                LCP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PERCHLORATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL O1 LCP doub 173 n n 
CL O2 LCP doub 174 n n 
CL O3 LCP doub 175 n n 
CL O4 LCP sing 176 n n 
#
_atom_sites.entry_id                     4YGL 
_atom_sites.fract_transf_matrix[1][1]    0.023732 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006114 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024366 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01417 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 1 ZN ZN . 
C 3 OH A 1 302 1 OH O . 
D 4 LCP A 1 303 1 LCP LCP . 
E 4 LCP A 1 304 2 LCP LCP . 
F 4 LCP A 1 305 3 LCP LCP . 
G 5 HOH A 1 401 163 HOH HOH . 
G 5 HOH A 2 402 138 HOH HOH . 
G 5 HOH A 3 403 144 HOH HOH . 
G 5 HOH A 4 404 159 HOH HOH . 
G 5 HOH A 5 405 169 HOH HOH . 
G 5 HOH A 6 406 145 HOH HOH . 
G 5 HOH A 7 407 206 HOH HOH . 
G 5 HOH A 8 408 157 HOH HOH . 
G 5 HOH A 9 409 170 HOH HOH . 
G 5 HOH A 10 410 128 HOH HOH . 
G 5 HOH A 11 411 81 HOH HOH . 
G 5 HOH A 12 412 87 HOH HOH . 
G 5 HOH A 13 413 214 HOH HOH . 
G 5 HOH A 14 414 139 HOH HOH . 
G 5 HOH A 15 415 162 HOH HOH . 
G 5 HOH A 16 416 19 HOH HOH . 
G 5 HOH A 17 417 216 HOH HOH . 
G 5 HOH A 18 418 196 HOH HOH . 
G 5 HOH A 19 419 39 HOH HOH . 
G 5 HOH A 20 420 73 HOH HOH . 
G 5 HOH A 21 421 158 HOH HOH . 
G 5 HOH A 22 422 178 HOH HOH . 
G 5 HOH A 23 423 125 HOH HOH . 
G 5 HOH A 24 424 123 HOH HOH . 
G 5 HOH A 25 425 13 HOH HOH . 
G 5 HOH A 26 426 48 HOH HOH . 
G 5 HOH A 27 427 54 HOH HOH . 
G 5 HOH A 28 428 11 HOH HOH . 
G 5 HOH A 29 429 155 HOH HOH . 
G 5 HOH A 30 430 1 HOH HOH . 
G 5 HOH A 31 431 115 HOH HOH . 
G 5 HOH A 32 432 46 HOH HOH . 
G 5 HOH A 33 433 4 HOH HOH . 
G 5 HOH A 34 434 103 HOH HOH . 
G 5 HOH A 35 435 134 HOH HOH . 
G 5 HOH A 36 436 210 HOH HOH . 
G 5 HOH A 37 437 119 HOH HOH . 
G 5 HOH A 38 438 80 HOH HOH . 
G 5 HOH A 39 439 118 HOH HOH . 
G 5 HOH A 40 440 116 HOH HOH . 
G 5 HOH A 41 441 42 HOH HOH . 
G 5 HOH A 42 442 172 HOH HOH . 
G 5 HOH A 43 443 23 HOH HOH . 
G 5 HOH A 44 444 156 HOH HOH . 
G 5 HOH A 45 445 98 HOH HOH . 
G 5 HOH A 46 446 70 HOH HOH . 
G 5 HOH A 47 447 151 HOH HOH . 
G 5 HOH A 48 448 113 HOH HOH . 
G 5 HOH A 49 449 35 HOH HOH . 
G 5 HOH A 50 450 99 HOH HOH . 
G 5 HOH A 51 451 59 HOH HOH . 
G 5 HOH A 52 452 58 HOH HOH . 
G 5 HOH A 53 453 67 HOH HOH . 
G 5 HOH A 54 454 93 HOH HOH . 
G 5 HOH A 55 455 33 HOH HOH . 
G 5 HOH A 56 456 199 HOH HOH . 
G 5 HOH A 57 457 102 HOH HOH . 
G 5 HOH A 58 458 177 HOH HOH . 
G 5 HOH A 59 459 22 HOH HOH . 
G 5 HOH A 60 460 215 HOH HOH . 
G 5 HOH A 61 461 89 HOH HOH . 
G 5 HOH A 62 462 106 HOH HOH . 
G 5 HOH A 63 463 198 HOH HOH . 
G 5 HOH A 64 464 133 HOH HOH . 
G 5 HOH A 65 465 195 HOH HOH . 
G 5 HOH A 66 466 56 HOH HOH . 
G 5 HOH A 67 467 32 HOH HOH . 
G 5 HOH A 68 468 94 HOH HOH . 
G 5 HOH A 69 469 204 HOH HOH . 
G 5 HOH A 70 470 176 HOH HOH . 
G 5 HOH A 71 471 213 HOH HOH . 
G 5 HOH A 72 472 149 HOH HOH . 
G 5 HOH A 73 473 150 HOH HOH . 
G 5 HOH A 74 474 72 HOH HOH . 
G 5 HOH A 75 475 110 HOH HOH . 
G 5 HOH A 76 476 217 HOH HOH . 
G 5 HOH A 77 477 17 HOH HOH . 
G 5 HOH A 78 478 208 HOH HOH . 
G 5 HOH A 79 479 202 HOH HOH . 
G 5 HOH A 80 480 74 HOH HOH . 
G 5 HOH A 81 481 114 HOH HOH . 
G 5 HOH A 82 482 62 HOH HOH . 
G 5 HOH A 83 483 2 HOH HOH . 
G 5 HOH A 84 484 109 HOH HOH . 
G 5 HOH A 85 485 63 HOH HOH . 
G 5 HOH A 86 486 45 HOH HOH . 
G 5 HOH A 87 487 218 HOH HOH . 
G 5 HOH A 88 488 107 HOH HOH . 
G 5 HOH A 89 489 175 HOH HOH . 
G 5 HOH A 90 490 191 HOH HOH . 
G 5 HOH A 91 491 20 HOH HOH . 
G 5 HOH A 92 492 200 HOH HOH . 
G 5 HOH A 93 493 193 HOH HOH . 
G 5 HOH A 94 494 188 HOH HOH . 
G 5 HOH A 95 495 84 HOH HOH . 
G 5 HOH A 96 496 187 HOH HOH . 
G 5 HOH A 97 497 68 HOH HOH . 
G 5 HOH A 98 498 154 HOH HOH . 
G 5 HOH A 99 499 86 HOH HOH . 
G 5 HOH A 100 500 182 HOH HOH . 
G 5 HOH A 101 501 211 HOH HOH . 
G 5 HOH A 102 502 164 HOH HOH . 
G 5 HOH A 103 503 189 HOH HOH . 
G 5 HOH A 104 504 3 HOH HOH . 
G 5 HOH A 105 505 5 HOH HOH . 
G 5 HOH A 106 506 6 HOH HOH . 
G 5 HOH A 107 507 7 HOH HOH . 
G 5 HOH A 108 508 8 HOH HOH . 
G 5 HOH A 109 509 9 HOH HOH . 
G 5 HOH A 110 510 10 HOH HOH . 
G 5 HOH A 111 511 12 HOH HOH . 
G 5 HOH A 112 512 14 HOH HOH . 
G 5 HOH A 113 513 15 HOH HOH . 
G 5 HOH A 114 514 16 HOH HOH . 
G 5 HOH A 115 515 18 HOH HOH . 
G 5 HOH A 116 516 21 HOH HOH . 
G 5 HOH A 117 517 24 HOH HOH . 
G 5 HOH A 118 518 25 HOH HOH . 
G 5 HOH A 119 519 26 HOH HOH . 
G 5 HOH A 120 520 27 HOH HOH . 
G 5 HOH A 121 521 28 HOH HOH . 
G 5 HOH A 122 522 29 HOH HOH . 
G 5 HOH A 123 523 30 HOH HOH . 
G 5 HOH A 124 524 31 HOH HOH . 
G 5 HOH A 125 525 34 HOH HOH . 
G 5 HOH A 126 526 36 HOH HOH . 
G 5 HOH A 127 527 37 HOH HOH . 
G 5 HOH A 128 528 38 HOH HOH . 
G 5 HOH A 129 529 40 HOH HOH . 
G 5 HOH A 130 530 41 HOH HOH . 
G 5 HOH A 131 531 43 HOH HOH . 
G 5 HOH A 132 532 44 HOH HOH . 
G 5 HOH A 133 533 47 HOH HOH . 
G 5 HOH A 134 534 49 HOH HOH . 
G 5 HOH A 135 535 50 HOH HOH . 
G 5 HOH A 136 536 51 HOH HOH . 
G 5 HOH A 137 537 52 HOH HOH . 
G 5 HOH A 138 538 53 HOH HOH . 
G 5 HOH A 139 539 55 HOH HOH . 
G 5 HOH A 140 540 57 HOH HOH . 
G 5 HOH A 141 541 60 HOH HOH . 
G 5 HOH A 142 542 61 HOH HOH . 
G 5 HOH A 143 543 64 HOH HOH . 
G 5 HOH A 144 544 65 HOH HOH . 
G 5 HOH A 145 545 66 HOH HOH . 
G 5 HOH A 146 546 69 HOH HOH . 
G 5 HOH A 147 547 71 HOH HOH . 
G 5 HOH A 148 548 75 HOH HOH . 
G 5 HOH A 149 549 76 HOH HOH . 
G 5 HOH A 150 550 77 HOH HOH . 
G 5 HOH A 151 551 78 HOH HOH . 
G 5 HOH A 152 552 79 HOH HOH . 
G 5 HOH A 153 553 82 HOH HOH . 
G 5 HOH A 154 554 83 HOH HOH . 
G 5 HOH A 155 555 85 HOH HOH . 
G 5 HOH A 156 556 88 HOH HOH . 
G 5 HOH A 157 557 90 HOH HOH . 
G 5 HOH A 158 558 91 HOH HOH . 
G 5 HOH A 159 559 92 HOH HOH . 
G 5 HOH A 160 560 95 HOH HOH . 
G 5 HOH A 161 561 96 HOH HOH . 
G 5 HOH A 162 562 97 HOH HOH . 
G 5 HOH A 163 563 100 HOH HOH . 
G 5 HOH A 164 564 101 HOH HOH . 
G 5 HOH A 165 565 104 HOH HOH . 
G 5 HOH A 166 566 105 HOH HOH . 
G 5 HOH A 167 567 111 HOH HOH . 
G 5 HOH A 168 568 112 HOH HOH . 
G 5 HOH A 169 569 117 HOH HOH . 
G 5 HOH A 170 570 120 HOH HOH . 
G 5 HOH A 171 571 121 HOH HOH . 
G 5 HOH A 172 572 122 HOH HOH . 
G 5 HOH A 173 573 124 HOH HOH . 
G 5 HOH A 174 574 126 HOH HOH . 
G 5 HOH A 175 575 127 HOH HOH . 
G 5 HOH A 176 576 129 HOH HOH . 
G 5 HOH A 177 577 130 HOH HOH . 
G 5 HOH A 178 578 131 HOH HOH . 
G 5 HOH A 179 579 132 HOH HOH . 
G 5 HOH A 180 580 135 HOH HOH . 
G 5 HOH A 181 581 136 HOH HOH . 
G 5 HOH A 182 582 137 HOH HOH . 
G 5 HOH A 183 583 140 HOH HOH . 
G 5 HOH A 184 584 141 HOH HOH . 
G 5 HOH A 185 585 142 HOH HOH . 
G 5 HOH A 186 586 143 HOH HOH . 
G 5 HOH A 187 587 146 HOH HOH . 
G 5 HOH A 188 588 147 HOH HOH . 
G 5 HOH A 189 589 148 HOH HOH . 
G 5 HOH A 190 590 152 HOH HOH . 
G 5 HOH A 191 591 153 HOH HOH . 
G 5 HOH A 192 592 160 HOH HOH . 
G 5 HOH A 193 593 161 HOH HOH . 
G 5 HOH A 194 594 165 HOH HOH . 
G 5 HOH A 195 595 166 HOH HOH . 
G 5 HOH A 196 596 167 HOH HOH . 
G 5 HOH A 197 597 168 HOH HOH . 
G 5 HOH A 198 598 171 HOH HOH . 
G 5 HOH A 199 599 173 HOH HOH . 
G 5 HOH A 200 600 174 HOH HOH . 
G 5 HOH A 201 601 179 HOH HOH . 
G 5 HOH A 202 602 180 HOH HOH . 
G 5 HOH A 203 603 183 HOH HOH . 
G 5 HOH A 204 604 184 HOH HOH . 
G 5 HOH A 205 605 185 HOH HOH . 
G 5 HOH A 206 606 186 HOH HOH . 
G 5 HOH A 207 607 190 HOH HOH . 
G 5 HOH A 208 608 194 HOH HOH . 
G 5 HOH A 209 609 197 HOH HOH . 
G 5 HOH A 210 610 201 HOH HOH . 
G 5 HOH A 211 611 203 HOH HOH . 
G 5 HOH A 212 612 205 HOH HOH . 
G 5 HOH A 213 613 207 HOH HOH . 
G 5 HOH A 214 614 209 HOH HOH . 
G 5 HOH A 215 615 212 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL LCP . . . D 4 14.676 1.723 17.491 1 9.59 ? CL LCP 303 A 1 
HETATM 2 O O1 LCP . . . D 4 16.136 1.565 17.193 1 12.83 ? O1 LCP 303 A 1 
HETATM 3 O O2 LCP . . . D 4 14.431 1.807 19.005 1 15.99 ? O2 LCP 303 A 1 
HETATM 4 O O3 LCP . . . D 4 14.245 3.074 17.012 1 13.57 ? O3 LCP 303 A 1 
HETATM 5 O O4 LCP . . . D 4 13.804 0.787 16.708 1 9.82 ? O4 LCP 303 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           5 
#