data_4YGN
#
_model_server_result.job_id            STVOQxEwR7GAsgO2n1dvdg 
_model_server_result.datetime_utc      '2024-10-18 16:32:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ygn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4YGN 
#
_exptl.entry_id    4YGN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.904 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IODIDE ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.57 
_cell.angle_gamma         90 
_cell.entry_id            4YGN 
_cell.length_a            42.341 
_cell.length_b            41.336 
_cell.length_c            72.837 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YGN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 92 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc2 A NE2 HIS 94 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc3 A ND1 HIS 117 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
#
_chem_comp.formula           'I -1' 
_chem_comp.formula_weight    126.904 
_chem_comp.id                IOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IODIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4YGN 
_atom_sites.fract_transf_matrix[1][1]    0.023618 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006137 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024192 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014185 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 1 ZN ZN . 
C 3 IOD A 1 302 1 IOD IOD . 
D 3 IOD A 1 303 2 IOD IOD . 
E 3 IOD A 1 304 3 IOD IOD . 
F 3 IOD A 1 305 4 IOD IOD . 
G 3 IOD A 1 306 5 IOD IOD . 
H 4 HOH A 1 401 132 HOH HOH . 
H 4 HOH A 2 402 75 HOH HOH . 
H 4 HOH A 3 403 95 HOH HOH . 
H 4 HOH A 4 404 69 HOH HOH . 
H 4 HOH A 5 405 100 HOH HOH . 
H 4 HOH A 6 406 44 HOH HOH . 
H 4 HOH A 7 407 47 HOH HOH . 
H 4 HOH A 8 408 42 HOH HOH . 
H 4 HOH A 9 409 79 HOH HOH . 
H 4 HOH A 10 410 93 HOH HOH . 
H 4 HOH A 11 411 114 HOH HOH . 
H 4 HOH A 12 412 91 HOH HOH . 
H 4 HOH A 13 413 58 HOH HOH . 
H 4 HOH A 14 414 135 HOH HOH . 
H 4 HOH A 15 415 77 HOH HOH . 
H 4 HOH A 16 416 110 HOH HOH . 
H 4 HOH A 17 417 105 HOH HOH . 
H 4 HOH A 18 418 12 HOH HOH . 
H 4 HOH A 19 419 125 HOH HOH . 
H 4 HOH A 20 420 59 HOH HOH . 
H 4 HOH A 21 421 136 HOH HOH . 
H 4 HOH A 22 422 7 HOH HOH . 
H 4 HOH A 23 423 30 HOH HOH . 
H 4 HOH A 24 424 106 HOH HOH . 
H 4 HOH A 25 425 84 HOH HOH . 
H 4 HOH A 26 426 87 HOH HOH . 
H 4 HOH A 27 427 32 HOH HOH . 
H 4 HOH A 28 428 124 HOH HOH . 
H 4 HOH A 29 429 130 HOH HOH . 
H 4 HOH A 30 430 56 HOH HOH . 
H 4 HOH A 31 431 92 HOH HOH . 
H 4 HOH A 32 432 133 HOH HOH . 
H 4 HOH A 33 433 71 HOH HOH . 
H 4 HOH A 34 434 68 HOH HOH . 
H 4 HOH A 35 435 43 HOH HOH . 
H 4 HOH A 36 436 127 HOH HOH . 
H 4 HOH A 37 437 104 HOH HOH . 
H 4 HOH A 38 438 128 HOH HOH . 
H 4 HOH A 39 439 120 HOH HOH . 
H 4 HOH A 40 440 138 HOH HOH . 
H 4 HOH A 41 441 129 HOH HOH . 
H 4 HOH A 42 442 16 HOH HOH . 
H 4 HOH A 43 443 98 HOH HOH . 
H 4 HOH A 44 444 137 HOH HOH . 
H 4 HOH A 45 445 141 HOH HOH . 
H 4 HOH A 46 446 121 HOH HOH . 
H 4 HOH A 47 447 139 HOH HOH . 
H 4 HOH A 48 448 52 HOH HOH . 
H 4 HOH A 49 449 1 HOH HOH . 
H 4 HOH A 50 450 123 HOH HOH . 
H 4 HOH A 51 451 99 HOH HOH . 
H 4 HOH A 52 452 64 HOH HOH . 
H 4 HOH A 53 453 119 HOH HOH . 
H 4 HOH A 54 454 49 HOH HOH . 
H 4 HOH A 55 455 65 HOH HOH . 
H 4 HOH A 56 456 50 HOH HOH . 
H 4 HOH A 57 457 101 HOH HOH . 
H 4 HOH A 58 458 111 HOH HOH . 
H 4 HOH A 59 459 96 HOH HOH . 
H 4 HOH A 60 460 46 HOH HOH . 
H 4 HOH A 61 461 63 HOH HOH . 
H 4 HOH A 62 462 55 HOH HOH . 
H 4 HOH A 63 463 115 HOH HOH . 
H 4 HOH A 64 464 38 HOH HOH . 
H 4 HOH A 65 465 2 HOH HOH . 
H 4 HOH A 66 466 3 HOH HOH . 
H 4 HOH A 67 467 4 HOH HOH . 
H 4 HOH A 68 468 5 HOH HOH . 
H 4 HOH A 69 469 6 HOH HOH . 
H 4 HOH A 70 470 8 HOH HOH . 
H 4 HOH A 71 471 9 HOH HOH . 
H 4 HOH A 72 472 10 HOH HOH . 
H 4 HOH A 73 473 11 HOH HOH . 
H 4 HOH A 74 474 13 HOH HOH . 
H 4 HOH A 75 475 14 HOH HOH . 
H 4 HOH A 76 476 15 HOH HOH . 
H 4 HOH A 77 477 17 HOH HOH . 
H 4 HOH A 78 478 18 HOH HOH . 
H 4 HOH A 79 479 20 HOH HOH . 
H 4 HOH A 80 480 21 HOH HOH . 
H 4 HOH A 81 481 22 HOH HOH . 
H 4 HOH A 82 482 23 HOH HOH . 
H 4 HOH A 83 483 24 HOH HOH . 
H 4 HOH A 84 484 25 HOH HOH . 
H 4 HOH A 85 485 26 HOH HOH . 
H 4 HOH A 86 486 27 HOH HOH . 
H 4 HOH A 87 487 28 HOH HOH . 
H 4 HOH A 88 488 29 HOH HOH . 
H 4 HOH A 89 489 31 HOH HOH . 
H 4 HOH A 90 490 33 HOH HOH . 
H 4 HOH A 91 491 34 HOH HOH . 
H 4 HOH A 92 492 35 HOH HOH . 
H 4 HOH A 93 493 36 HOH HOH . 
H 4 HOH A 94 494 37 HOH HOH . 
H 4 HOH A 95 495 39 HOH HOH . 
H 4 HOH A 96 496 40 HOH HOH . 
H 4 HOH A 97 497 41 HOH HOH . 
H 4 HOH A 98 498 45 HOH HOH . 
H 4 HOH A 99 499 48 HOH HOH . 
H 4 HOH A 100 500 51 HOH HOH . 
H 4 HOH A 101 501 53 HOH HOH . 
H 4 HOH A 102 502 54 HOH HOH . 
H 4 HOH A 103 503 57 HOH HOH . 
H 4 HOH A 104 504 60 HOH HOH . 
H 4 HOH A 105 505 61 HOH HOH . 
H 4 HOH A 106 506 62 HOH HOH . 
H 4 HOH A 107 507 66 HOH HOH . 
H 4 HOH A 108 508 67 HOH HOH . 
H 4 HOH A 109 509 70 HOH HOH . 
H 4 HOH A 110 510 72 HOH HOH . 
H 4 HOH A 111 511 73 HOH HOH . 
H 4 HOH A 112 512 74 HOH HOH . 
H 4 HOH A 113 513 76 HOH HOH . 
H 4 HOH A 114 514 78 HOH HOH . 
H 4 HOH A 115 515 80 HOH HOH . 
H 4 HOH A 116 516 81 HOH HOH . 
H 4 HOH A 117 517 82 HOH HOH . 
H 4 HOH A 118 518 83 HOH HOH . 
H 4 HOH A 119 519 85 HOH HOH . 
H 4 HOH A 120 520 86 HOH HOH . 
H 4 HOH A 121 521 88 HOH HOH . 
H 4 HOH A 122 522 89 HOH HOH . 
H 4 HOH A 123 523 90 HOH HOH . 
H 4 HOH A 124 524 94 HOH HOH . 
H 4 HOH A 125 525 102 HOH HOH . 
H 4 HOH A 126 526 103 HOH HOH . 
H 4 HOH A 127 527 107 HOH HOH . 
H 4 HOH A 128 528 108 HOH HOH . 
H 4 HOH A 129 529 109 HOH HOH . 
H 4 HOH A 130 530 113 HOH HOH . 
H 4 HOH A 131 531 117 HOH HOH . 
H 4 HOH A 132 532 118 HOH HOH . 
H 4 HOH A 133 533 122 HOH HOH . 
H 4 HOH A 134 534 126 HOH HOH . 
H 4 HOH A 135 535 131 HOH HOH . 
H 4 HOH A 136 536 134 HOH HOH . 
H 4 HOH A 137 537 140 HOH HOH . 
H 4 HOH A 138 538 142 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           I 
_atom_site.label_atom_id         I 
_atom_site.label_comp_id         IOD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               14.679 
_atom_site.Cartn_y               1.575 
_atom_site.Cartn_z               17.52 
_atom_site.occupancy             0.4 
_atom_site.B_iso_or_equiv        17.13 
_atom_site.pdbx_formal_charge    0 
_atom_site.auth_atom_id          I 
_atom_site.auth_comp_id          IOD 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#