data_4YGO # _model_server_result.job_id aB_QD82tHRJh6HanSCl-3w _model_server_result.datetime_utc '2024-11-16 20:40:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ygo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":202}' # _entry.id 4YGO # _exptl.entry_id 4YGO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.13 _cell.angle_gamma 90 _cell.entry_id 4YGO _cell.length_a 155.118 _cell.length_b 135.793 _cell.length_c 72.848 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YGO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -33.219486 0 64.832838 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 33 A GLU 33 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc2 A OE2 GLU 33 A GLU 33 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc3 A O PRO 35 A PRO 35 1_555 H CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 A OE1 GLU 41 A GLU 41 1_555 H CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc5 A OE2 GLU 41 A GLU 41 1_555 H CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc6 A OE1 GLU 75 A GLU 75 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc7 A OE2 GLU 75 A GLU 75 1_555 G CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc8 G CA CA . A CA 201 2_556 B OE1 GLU 33 B GLU 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc9 G CA CA . A CA 201 2_556 B OE2 GLU 33 B GLU 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc10 G CA CA . A CA 201 2_556 B OE1 GLU 75 B GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc11 G CA CA . A CA 201 2_556 B OE2 GLU 75 B GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc12 H CA CA . A CA 202 1_555 N O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc13 H CA CA . A CA 202 1_555 C OD1 ASN 53 D ASN 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc14 B OD1 ASN 53 B ASN 53 1_555 J CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc15 J CA CA . B CA 201 1_555 D O PRO 35 C PRO 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc16 J CA CA . B CA 201 1_555 D OE1 GLU 41 C GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc17 J CA CA . B CA 201 1_555 D OE2 GLU 41 C GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc18 J CA CA . B CA 201 1_555 Q O HOH . C HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc19 C OE1 GLU 33 D GLU 33 1_555 K CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc20 C OE2 GLU 33 D GLU 33 1_555 K CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc21 C OE1 GLU 34 D GLU 34 1_555 L CA CA . D CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc22 C O PRO 35 D PRO 35 1_555 L CA CA . D CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc23 C OE1 GLU 41 D GLU 41 1_555 L CA CA . D CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc24 C OE2 GLU 41 D GLU 41 1_555 L CA CA . D CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc25 C OE2 GLU 75 D GLU 75 1_555 K CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc26 K CA CA . D CA 201 2_556 D OE1 GLU 33 C GLU 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc27 K CA CA . D CA 201 2_556 D OE2 GLU 33 C GLU 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc28 K CA CA . D CA 201 2_556 D OE1 GLU 75 C GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc29 K CA CA . D CA 201 2_556 D OE2 GLU 75 C GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc30 L CA CA . D CA 202 1_555 D OD1 ASN 53 C ASN 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc31 L CA CA . D CA 202 1_555 Q O HOH . C HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc32 E OE1 GLU 33 E GLU 33 1_555 M CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc33 E OE2 GLU 33 E GLU 33 1_555 M CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc34 E OE1 GLU 75 E GLU 75 1_555 M CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc35 E OE2 GLU 75 E GLU 75 1_555 M CA CA . E CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc36 M CA CA . E CA 201 2_556 F OE1 GLU 33 F GLU 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc37 M CA CA . E CA 201 2_556 F OE2 GLU 33 F GLU 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc38 M CA CA . E CA 201 2_556 F OE1 GLU 75 F GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc39 M CA CA . E CA 201 2_556 F OE2 GLU 75 F GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YGO _atom_sites.fract_transf_matrix[1][1] 0.006447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003303 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CA A 1 201 1 CA CA . H 2 CA A 1 202 5 CA CA . I 3 MOH A 1 203 1 MOH MOH . J 2 CA B 1 201 6 CA CA . K 2 CA D 1 201 2 CA CA . L 2 CA D 1 202 4 CA CA . M 2 CA E 1 201 3 CA CA . N 4 HOH A 1 301 17 HOH HOH . N 4 HOH A 2 302 129 HOH HOH . N 4 HOH A 3 303 126 HOH HOH . N 4 HOH A 4 304 9 HOH HOH . N 4 HOH A 5 305 143 HOH HOH . N 4 HOH A 6 306 13 HOH HOH . N 4 HOH A 7 307 71 HOH HOH . N 4 HOH A 8 308 130 HOH HOH . N 4 HOH A 9 309 76 HOH HOH . N 4 HOH A 10 310 75 HOH HOH . N 4 HOH A 11 311 133 HOH HOH . N 4 HOH A 12 312 1 HOH HOH . N 4 HOH A 13 313 2 HOH HOH . N 4 HOH A 14 314 3 HOH HOH . N 4 HOH A 15 315 5 HOH HOH . N 4 HOH A 16 316 7 HOH HOH . N 4 HOH A 17 317 10 HOH HOH . N 4 HOH A 18 318 12 HOH HOH . N 4 HOH A 19 319 14 HOH HOH . N 4 HOH A 20 320 15 HOH HOH . N 4 HOH A 21 321 78 HOH HOH . N 4 HOH A 22 322 80 HOH HOH . N 4 HOH A 23 323 81 HOH HOH . N 4 HOH A 24 324 82 HOH HOH . N 4 HOH A 25 325 120 HOH HOH . N 4 HOH A 26 326 121 HOH HOH . N 4 HOH A 27 327 122 HOH HOH . N 4 HOH A 28 328 144 HOH HOH . O 4 HOH B 1 301 123 HOH HOH . O 4 HOH B 2 302 86 HOH HOH . O 4 HOH B 3 303 128 HOH HOH . O 4 HOH B 4 304 91 HOH HOH . O 4 HOH B 5 305 155 HOH HOH . O 4 HOH B 6 306 20 HOH HOH . O 4 HOH B 7 307 19 HOH HOH . O 4 HOH B 8 308 21 HOH HOH . O 4 HOH B 9 309 22 HOH HOH . O 4 HOH B 10 310 23 HOH HOH . O 4 HOH B 11 311 24 HOH HOH . O 4 HOH B 12 312 84 HOH HOH . O 4 HOH B 13 313 87 HOH HOH . O 4 HOH B 14 314 88 HOH HOH . O 4 HOH B 15 315 90 HOH HOH . O 4 HOH B 16 316 92 HOH HOH . O 4 HOH B 17 317 132 HOH HOH . P 4 HOH D 1 301 31 HOH HOH . P 4 HOH D 2 302 56 HOH HOH . P 4 HOH D 3 303 30 HOH HOH . P 4 HOH D 4 304 148 HOH HOH . P 4 HOH D 5 305 134 HOH HOH . P 4 HOH D 6 306 97 HOH HOH . P 4 HOH D 7 307 100 HOH HOH . P 4 HOH D 8 308 36 HOH HOH . P 4 HOH D 9 309 6 HOH HOH . P 4 HOH D 10 310 8 HOH HOH . P 4 HOH D 11 311 16 HOH HOH . P 4 HOH D 12 312 25 HOH HOH . P 4 HOH D 13 313 26 HOH HOH . P 4 HOH D 14 314 32 HOH HOH . P 4 HOH D 15 315 33 HOH HOH . P 4 HOH D 16 316 34 HOH HOH . P 4 HOH D 17 317 35 HOH HOH . P 4 HOH D 18 318 37 HOH HOH . P 4 HOH D 19 319 38 HOH HOH . P 4 HOH D 20 320 73 HOH HOH . P 4 HOH D 21 321 93 HOH HOH . P 4 HOH D 22 322 94 HOH HOH . P 4 HOH D 23 323 96 HOH HOH . P 4 HOH D 24 324 135 HOH HOH . P 4 HOH D 25 325 147 HOH HOH . Q 4 HOH C 1 301 127 HOH HOH . Q 4 HOH C 2 302 101 HOH HOH . Q 4 HOH C 3 303 125 HOH HOH . Q 4 HOH C 4 304 44 HOH HOH . Q 4 HOH C 5 305 106 HOH HOH . Q 4 HOH C 6 306 146 HOH HOH . Q 4 HOH C 7 307 140 HOH HOH . Q 4 HOH C 8 308 139 HOH HOH . Q 4 HOH C 9 309 43 HOH HOH . Q 4 HOH C 10 310 141 HOH HOH . Q 4 HOH C 11 311 104 HOH HOH . Q 4 HOH C 12 312 29 HOH HOH . Q 4 HOH C 13 313 41 HOH HOH . Q 4 HOH C 14 314 45 HOH HOH . Q 4 HOH C 15 315 46 HOH HOH . Q 4 HOH C 16 316 95 HOH HOH . Q 4 HOH C 17 317 98 HOH HOH . Q 4 HOH C 18 318 99 HOH HOH . Q 4 HOH C 19 319 102 HOH HOH . Q 4 HOH C 20 320 105 HOH HOH . Q 4 HOH C 21 321 137 HOH HOH . Q 4 HOH C 22 322 138 HOH HOH . Q 4 HOH C 23 323 142 HOH HOH . Q 4 HOH C 24 324 145 HOH HOH . Q 4 HOH C 25 325 149 HOH HOH . Q 4 HOH C 26 326 150 HOH HOH . Q 4 HOH C 27 327 151 HOH HOH . Q 4 HOH C 28 328 156 HOH HOH . Q 4 HOH C 29 329 157 HOH HOH . Q 4 HOH C 30 330 158 HOH HOH . Q 4 HOH C 31 331 159 HOH HOH . R 4 HOH E 1 301 111 HOH HOH . R 4 HOH E 2 302 152 HOH HOH . R 4 HOH E 3 303 51 HOH HOH . R 4 HOH E 4 304 115 HOH HOH . R 4 HOH E 5 305 40 HOH HOH . R 4 HOH E 6 306 136 HOH HOH . R 4 HOH E 7 307 52 HOH HOH . R 4 HOH E 8 308 39 HOH HOH . R 4 HOH E 9 309 112 HOH HOH . R 4 HOH E 10 310 47 HOH HOH . R 4 HOH E 11 311 48 HOH HOH . R 4 HOH E 12 312 49 HOH HOH . R 4 HOH E 13 313 50 HOH HOH . R 4 HOH E 14 314 53 HOH HOH . R 4 HOH E 15 315 54 HOH HOH . R 4 HOH E 16 316 55 HOH HOH . R 4 HOH E 17 317 58 HOH HOH . R 4 HOH E 18 318 74 HOH HOH . R 4 HOH E 19 319 113 HOH HOH . R 4 HOH E 20 320 160 HOH HOH . S 4 HOH F 1 201 124 HOH HOH . S 4 HOH F 2 202 61 HOH HOH . S 4 HOH F 3 203 110 HOH HOH . S 4 HOH F 4 204 63 HOH HOH . S 4 HOH F 5 205 103 HOH HOH . S 4 HOH F 6 206 131 HOH HOH . S 4 HOH F 7 207 117 HOH HOH . S 4 HOH F 8 208 109 HOH HOH . S 4 HOH F 9 209 118 HOH HOH . S 4 HOH F 10 210 154 HOH HOH . S 4 HOH F 11 211 77 HOH HOH . S 4 HOH F 12 212 119 HOH HOH . S 4 HOH F 13 213 57 HOH HOH . S 4 HOH F 14 214 60 HOH HOH . S 4 HOH F 15 215 62 HOH HOH . S 4 HOH F 16 216 64 HOH HOH . S 4 HOH F 17 217 65 HOH HOH . S 4 HOH F 18 218 66 HOH HOH . S 4 HOH F 19 219 67 HOH HOH . S 4 HOH F 20 220 69 HOH HOH . S 4 HOH F 21 221 108 HOH HOH . S 4 HOH F 22 222 116 HOH HOH . S 4 HOH F 23 223 153 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x -30.98 _atom_site.Cartn_y -8.528 _atom_site.Cartn_z 15.857 _atom_site.occupancy 0.7 _atom_site.B_iso_or_equiv 57.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #