data_4YGR # _model_server_result.job_id QIBP6QmjWilLVNwmgyjwyQ _model_server_result.datetime_utc '2025-03-04 08:11:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ygr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YGR # _exptl.entry_id 4YGR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.29 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.35 _cell.angle_gamma 90 _cell.entry_id 4YGR _cell.length_a 122.54 _cell.length_b 61.702 _cell.length_c 37.575 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YGR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 7 A ASP 7 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc2 A O ASP 9 A ASP 9 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 A OD1 ASP 166 A ASP 166 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc4 B O1 NHE . A NHE 301 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc5 D MG MG . A MG 303 1_555 E O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? # _chem_comp.formula 'C8 H17 N O3 S' _chem_comp.formula_weight 207.29 _chem_comp.id NHE _chem_comp.mon_nstd_flag . _chem_comp.name '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-CYCLOHEXYLTAURINE;CHES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3' C2' NHE sing 224 n n C3' C4' NHE sing 225 n n C3' "H3'1" NHE sing 226 n n C3' "H3'2" NHE sing 227 n n C2' C1' NHE sing 228 n n C2' "H2'1" NHE sing 229 n n C2' "H2'2" NHE sing 230 n n C1' C6' NHE sing 231 n n C1' N NHE sing 232 n n C1' "HC'1" NHE sing 233 n n C6' C5' NHE sing 234 n n C6' "H6'1" NHE sing 235 n n C6' "H6'2" NHE sing 236 n n N C1 NHE sing 237 n n N HN NHE sing 238 n n C1 C2 NHE sing 239 n n C1 HC11 NHE sing 240 n n C1 HC12 NHE sing 241 n n C2 S NHE sing 242 n n C2 HC21 NHE sing 243 n n C2 HC22 NHE sing 244 n n S O1 NHE doub 245 n n S O2 NHE doub 246 n n S O3 NHE sing 247 n n O3 HO3 NHE sing 248 n n C5' C4' NHE sing 249 n n C5' "H5'1" NHE sing 250 n n C5' "H5'2" NHE sing 251 n n C4' "H4'1" NHE sing 252 n n C4' "H4'2" NHE sing 253 n n # _atom_sites.entry_id 4YGR _atom_sites.fract_transf_matrix[1][1] 0.008161 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002549 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NHE A 1 301 1 NHE NHE . C 2 NHE A 1 302 1 NHE NHE . D 3 MG A 1 303 1 MG MG . E 4 HOH A 1 401 137 HOH HOH . E 4 HOH A 2 402 78 HOH HOH . E 4 HOH A 3 403 105 HOH HOH . E 4 HOH A 4 404 156 HOH HOH . E 4 HOH A 5 405 61 HOH HOH . E 4 HOH A 6 406 185 HOH HOH . E 4 HOH A 7 407 198 HOH HOH . E 4 HOH A 8 408 182 HOH HOH . E 4 HOH A 9 409 33 HOH HOH . E 4 HOH A 10 410 93 HOH HOH . E 4 HOH A 11 411 94 HOH HOH . E 4 HOH A 12 412 28 HOH HOH . E 4 HOH A 13 413 52 HOH HOH . E 4 HOH A 14 414 128 HOH HOH . E 4 HOH A 15 415 83 HOH HOH . E 4 HOH A 16 416 15 HOH HOH . E 4 HOH A 17 417 66 HOH HOH . E 4 HOH A 18 418 97 HOH HOH . E 4 HOH A 19 419 122 HOH HOH . E 4 HOH A 20 420 56 HOH HOH . E 4 HOH A 21 421 59 HOH HOH . E 4 HOH A 22 422 99 HOH HOH . E 4 HOH A 23 423 10 HOH HOH . E 4 HOH A 24 424 11 HOH HOH . E 4 HOH A 25 425 55 HOH HOH . E 4 HOH A 26 426 65 HOH HOH . E 4 HOH A 27 427 48 HOH HOH . E 4 HOH A 28 428 49 HOH HOH . E 4 HOH A 29 429 26 HOH HOH . E 4 HOH A 30 430 54 HOH HOH . E 4 HOH A 31 431 22 HOH HOH . E 4 HOH A 32 432 82 HOH HOH . E 4 HOH A 33 433 68 HOH HOH . E 4 HOH A 34 434 37 HOH HOH . E 4 HOH A 35 435 74 HOH HOH . E 4 HOH A 36 436 6 HOH HOH . E 4 HOH A 37 437 89 HOH HOH . E 4 HOH A 38 438 43 HOH HOH . E 4 HOH A 39 439 34 HOH HOH . E 4 HOH A 40 440 39 HOH HOH . E 4 HOH A 41 441 190 HOH HOH . E 4 HOH A 42 442 24 HOH HOH . E 4 HOH A 43 443 118 HOH HOH . E 4 HOH A 44 444 44 HOH HOH . E 4 HOH A 45 445 16 HOH HOH . E 4 HOH A 46 446 143 HOH HOH . E 4 HOH A 47 447 77 HOH HOH . E 4 HOH A 48 448 73 HOH HOH . E 4 HOH A 49 449 62 HOH HOH . E 4 HOH A 50 450 176 HOH HOH . E 4 HOH A 51 451 139 HOH HOH . E 4 HOH A 52 452 141 HOH HOH . E 4 HOH A 53 453 175 HOH HOH . E 4 HOH A 54 454 132 HOH HOH . E 4 HOH A 55 455 138 HOH HOH . E 4 HOH A 56 456 164 HOH HOH . E 4 HOH A 57 457 110 HOH HOH . E 4 HOH A 58 458 30 HOH HOH . E 4 HOH A 59 459 145 HOH HOH . E 4 HOH A 60 460 23 HOH HOH . E 4 HOH A 61 461 125 HOH HOH . E 4 HOH A 62 462 84 HOH HOH . E 4 HOH A 63 463 149 HOH HOH . E 4 HOH A 64 464 123 HOH HOH . E 4 HOH A 65 465 107 HOH HOH . E 4 HOH A 66 466 167 HOH HOH . E 4 HOH A 67 467 81 HOH HOH . E 4 HOH A 68 468 126 HOH HOH . E 4 HOH A 69 469 106 HOH HOH . E 4 HOH A 70 470 195 HOH HOH . E 4 HOH A 71 471 191 HOH HOH . E 4 HOH A 72 472 136 HOH HOH . E 4 HOH A 73 473 146 HOH HOH . E 4 HOH A 74 474 127 HOH HOH . E 4 HOH A 75 475 173 HOH HOH . E 4 HOH A 76 476 71 HOH HOH . E 4 HOH A 77 477 177 HOH HOH . E 4 HOH A 78 478 58 HOH HOH . E 4 HOH A 79 479 114 HOH HOH . E 4 HOH A 80 480 112 HOH HOH . E 4 HOH A 81 481 186 HOH HOH . E 4 HOH A 82 482 133 HOH HOH . E 4 HOH A 83 483 117 HOH HOH . E 4 HOH A 84 484 148 HOH HOH . E 4 HOH A 85 485 111 HOH HOH . E 4 HOH A 86 486 90 HOH HOH . E 4 HOH A 87 487 116 HOH HOH . E 4 HOH A 88 488 184 HOH HOH . E 4 HOH A 89 489 131 HOH HOH . E 4 HOH A 90 490 109 HOH HOH . E 4 HOH A 91 491 101 HOH HOH . E 4 HOH A 92 492 193 HOH HOH . E 4 HOH A 93 493 189 HOH HOH . E 4 HOH A 94 494 168 HOH HOH . E 4 HOH A 95 495 144 HOH HOH . E 4 HOH A 96 496 183 HOH HOH . E 4 HOH A 97 497 1 HOH HOH . E 4 HOH A 98 498 2 HOH HOH . E 4 HOH A 99 499 3 HOH HOH . E 4 HOH A 100 500 4 HOH HOH . E 4 HOH A 101 501 5 HOH HOH . E 4 HOH A 102 502 7 HOH HOH . E 4 HOH A 103 503 8 HOH HOH . E 4 HOH A 104 504 9 HOH HOH . E 4 HOH A 105 505 12 HOH HOH . E 4 HOH A 106 506 13 HOH HOH . E 4 HOH A 107 507 14 HOH HOH . E 4 HOH A 108 508 17 HOH HOH . E 4 HOH A 109 509 18 HOH HOH . E 4 HOH A 110 510 19 HOH HOH . E 4 HOH A 111 511 20 HOH HOH . E 4 HOH A 112 512 21 HOH HOH . E 4 HOH A 113 513 25 HOH HOH . E 4 HOH A 114 514 27 HOH HOH . E 4 HOH A 115 515 29 HOH HOH . E 4 HOH A 116 516 31 HOH HOH . E 4 HOH A 117 517 32 HOH HOH . E 4 HOH A 118 518 35 HOH HOH . E 4 HOH A 119 519 36 HOH HOH . E 4 HOH A 120 520 38 HOH HOH . E 4 HOH A 121 521 40 HOH HOH . E 4 HOH A 122 522 41 HOH HOH . E 4 HOH A 123 523 42 HOH HOH . E 4 HOH A 124 524 45 HOH HOH . E 4 HOH A 125 525 46 HOH HOH . E 4 HOH A 126 526 47 HOH HOH . E 4 HOH A 127 527 50 HOH HOH . E 4 HOH A 128 528 51 HOH HOH . E 4 HOH A 129 529 53 HOH HOH . E 4 HOH A 130 530 57 HOH HOH . E 4 HOH A 131 531 60 HOH HOH . E 4 HOH A 132 532 63 HOH HOH . E 4 HOH A 133 533 64 HOH HOH . E 4 HOH A 134 534 67 HOH HOH . E 4 HOH A 135 535 69 HOH HOH . E 4 HOH A 136 536 70 HOH HOH . E 4 HOH A 137 537 72 HOH HOH . E 4 HOH A 138 538 75 HOH HOH . E 4 HOH A 139 539 76 HOH HOH . E 4 HOH A 140 540 79 HOH HOH . E 4 HOH A 141 541 80 HOH HOH . E 4 HOH A 142 542 85 HOH HOH . E 4 HOH A 143 543 86 HOH HOH . E 4 HOH A 144 544 87 HOH HOH . E 4 HOH A 145 545 88 HOH HOH . E 4 HOH A 146 546 91 HOH HOH . E 4 HOH A 147 547 92 HOH HOH . E 4 HOH A 148 548 95 HOH HOH . E 4 HOH A 149 549 96 HOH HOH . E 4 HOH A 150 550 98 HOH HOH . E 4 HOH A 151 551 100 HOH HOH . E 4 HOH A 152 552 102 HOH HOH . E 4 HOH A 153 553 103 HOH HOH . E 4 HOH A 154 554 104 HOH HOH . E 4 HOH A 155 555 108 HOH HOH . E 4 HOH A 156 556 113 HOH HOH . E 4 HOH A 157 557 115 HOH HOH . E 4 HOH A 158 558 119 HOH HOH . E 4 HOH A 159 559 120 HOH HOH . E 4 HOH A 160 560 121 HOH HOH . E 4 HOH A 161 561 124 HOH HOH . E 4 HOH A 162 562 129 HOH HOH . E 4 HOH A 163 563 130 HOH HOH . E 4 HOH A 164 564 134 HOH HOH . E 4 HOH A 165 565 135 HOH HOH . E 4 HOH A 166 566 140 HOH HOH . E 4 HOH A 167 567 142 HOH HOH . E 4 HOH A 168 568 147 HOH HOH . E 4 HOH A 169 569 150 HOH HOH . E 4 HOH A 170 570 151 HOH HOH . E 4 HOH A 171 571 152 HOH HOH . E 4 HOH A 172 572 153 HOH HOH . E 4 HOH A 173 573 154 HOH HOH . E 4 HOH A 174 574 155 HOH HOH . E 4 HOH A 175 575 157 HOH HOH . E 4 HOH A 176 576 158 HOH HOH . E 4 HOH A 177 577 159 HOH HOH . E 4 HOH A 178 578 160 HOH HOH . E 4 HOH A 179 579 161 HOH HOH . E 4 HOH A 180 580 162 HOH HOH . E 4 HOH A 181 581 163 HOH HOH . E 4 HOH A 182 582 165 HOH HOH . E 4 HOH A 183 583 166 HOH HOH . E 4 HOH A 184 584 169 HOH HOH . E 4 HOH A 185 585 170 HOH HOH . E 4 HOH A 186 586 171 HOH HOH . E 4 HOH A 187 587 172 HOH HOH . E 4 HOH A 188 588 174 HOH HOH . E 4 HOH A 189 589 178 HOH HOH . E 4 HOH A 190 590 179 HOH HOH . E 4 HOH A 191 591 180 HOH HOH . E 4 HOH A 192 592 181 HOH HOH . E 4 HOH A 193 593 187 HOH HOH . E 4 HOH A 194 594 188 HOH HOH . E 4 HOH A 195 595 192 HOH HOH . E 4 HOH A 196 596 194 HOH HOH . E 4 HOH A 197 597 196 HOH HOH . E 4 HOH A 198 598 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3' NHE . . . B 2 -24.268 -23.078 15.222 1 12.51 ? C3' NHE 301 A 1 HETATM 2 C C2' NHE . . . B 2 -23.634 -23.841 14.056 1 16.77 ? C2' NHE 301 A 1 HETATM 3 C C1' NHE . . . B 2 -22.145 -24.049 14.256 1 13.11 ? C1' NHE 301 A 1 HETATM 4 C C6' NHE . . . B 2 -21.442 -22.736 14.548 1 12.29 ? C6' NHE 301 A 1 HETATM 5 N N NHE . . . B 2 -21.634 -24.657 13.02 1 11.89 ? N NHE 301 A 1 HETATM 6 C C1 NHE . . . B 2 -20.356 -25.353 13.227 1 14.82 ? C1 NHE 301 A 1 HETATM 7 C C2 NHE . . . B 2 -19.881 -25.94 11.881 1 14.76 ? C2 NHE 301 A 1 HETATM 8 S S NHE . . . B 2 -18.286 -26.712 12.118 1 16.92 ? S NHE 301 A 1 HETATM 9 O O1 NHE . . . B 2 -17.839 -27.278 10.797 1 18.02 ? O1 NHE 301 A 1 HETATM 10 O O2 NHE . . . B 2 -17.297 -25.722 12.677 1 17.84 ? O2 NHE 301 A 1 HETATM 11 O O3 NHE . . . B 2 -18.453 -27.807 13.13 1 14.59 ? O3 NHE 301 A 1 HETATM 12 C C5' NHE . . . B 2 -22.074 -22.01 15.745 1 13.05 ? C5' NHE 301 A 1 HETATM 13 C C4' NHE . . . B 2 -23.554 -21.779 15.52 1 13.77 ? C4' NHE 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #