data_4YGU
#
_model_server_result.job_id            JxY6GTfHa6f-iDYxfNwcUg 
_model_server_result.datetime_utc      '2025-07-04 08:49:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ygu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":301}' 
#
_entry.id    4YGU 
#
_exptl.entry_id    4YGU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YGU 
_cell.length_a            55.318 
_cell.length_b            101.555 
_cell.length_c            137.313 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,Y 1 1 
B,J,K,L,Z 2 1 
C,M,N,O,P,Q,R,S,T,AA 3 1 
D,U,V,W,X,BA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 N N N 
? 4 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLN 149 A GLN 172 1_555 A N MSE 150 A MSE 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 A C MSE 150 A MSE 173 1_555 A N GLY 151 A GLY 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 B C GLN 149 B GLN 172 1_555 B N MSE 150 B MSE 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale4 B C MSE 150 B MSE 173 1_555 B N GLY 151 B GLY 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 C C GLN 149 C GLN 172 1_555 C N MSE 150 C MSE 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale6 C C MSE 150 C MSE 173 1_555 C N GLY 151 C GLY 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale7 D C GLN 149 D GLN 172 1_555 D N MSE 150 D MSE 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale8 D C MSE 150 D MSE 173 1_555 D N GLY 151 D GLY 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 246 n n 
C1 C2 PEG sing 247 n n 
C1 H11 PEG sing 248 n n 
C1 H12 PEG sing 249 n n 
O1 HO1 PEG sing 250 n n 
C2 O2 PEG sing 251 n n 
C2 H21 PEG sing 252 n n 
C2 H22 PEG sing 253 n n 
O2 C3 PEG sing 254 n n 
C3 C4 PEG sing 255 n n 
C3 H31 PEG sing 256 n n 
C3 H32 PEG sing 257 n n 
C4 O4 PEG sing 258 n n 
C4 H41 PEG sing 259 n n 
C4 H42 PEG sing 260 n n 
O4 HO4 PEG sing 261 n n 
#
_atom_sites.entry_id                     4YGU 
_atom_sites.fract_transf_matrix[1][1]    0.018077 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009847 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007283 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 EDO A 1 301 213 EDO EDO . 
F 2 EDO A 1 302 214 EDO EDO . 
G 2 EDO A 1 303 216 EDO EDO . 
H 2 EDO A 1 304 217 EDO EDO . 
I 2 EDO A 1 305 225 EDO EDO . 
J 3 PGE B 1 301 211 PGE PGE . 
K 2 EDO B 1 302 218 EDO EDO . 
L 2 EDO B 1 303 220 EDO EDO . 
M 4 PEG C 1 301 208 PEG PEG . 
N 4 PEG C 1 302 209 PEG PEG . 
O 2 EDO C 1 303 212 EDO EDO . 
P 2 EDO C 1 304 215 EDO EDO . 
Q 2 EDO C 1 305 219 EDO EDO . 
R 2 EDO C 1 306 221 EDO EDO . 
S 2 EDO C 1 307 223 EDO EDO . 
T 2 EDO C 1 308 227 EDO EDO . 
U 4 PEG D 1 301 210 PEG PEG . 
V 2 EDO D 1 302 222 EDO EDO . 
W 2 EDO D 1 303 224 EDO EDO . 
X 2 EDO D 1 304 226 EDO EDO . 
Y 5 HOH A 1 401 277 HOH HOH . 
Y 5 HOH A 2 402 266 HOH HOH . 
Y 5 HOH A 3 403 403 HOH HOH . 
Y 5 HOH A 4 404 298 HOH HOH . 
Y 5 HOH A 5 405 357 HOH HOH . 
Y 5 HOH A 6 406 375 HOH HOH . 
Y 5 HOH A 7 407 406 HOH HOH . 
Y 5 HOH A 8 408 360 HOH HOH . 
Y 5 HOH A 9 409 425 HOH HOH . 
Y 5 HOH A 10 410 231 HOH HOH . 
Y 5 HOH A 11 411 248 HOH HOH . 
Y 5 HOH A 12 412 256 HOH HOH . 
Y 5 HOH A 13 413 258 HOH HOH . 
Y 5 HOH A 14 414 260 HOH HOH . 
Y 5 HOH A 15 415 268 HOH HOH . 
Y 5 HOH A 16 416 270 HOH HOH . 
Y 5 HOH A 17 417 274 HOH HOH . 
Y 5 HOH A 18 418 275 HOH HOH . 
Y 5 HOH A 19 419 279 HOH HOH . 
Y 5 HOH A 20 420 284 HOH HOH . 
Y 5 HOH A 21 421 288 HOH HOH . 
Y 5 HOH A 22 422 290 HOH HOH . 
Y 5 HOH A 23 423 294 HOH HOH . 
Y 5 HOH A 24 424 296 HOH HOH . 
Y 5 HOH A 25 425 309 HOH HOH . 
Y 5 HOH A 26 426 316 HOH HOH . 
Y 5 HOH A 27 427 320 HOH HOH . 
Y 5 HOH A 28 428 321 HOH HOH . 
Y 5 HOH A 29 429 325 HOH HOH . 
Y 5 HOH A 30 430 326 HOH HOH . 
Y 5 HOH A 31 431 327 HOH HOH . 
Y 5 HOH A 32 432 331 HOH HOH . 
Y 5 HOH A 33 433 333 HOH HOH . 
Y 5 HOH A 34 434 336 HOH HOH . 
Y 5 HOH A 35 435 337 HOH HOH . 
Y 5 HOH A 36 436 343 HOH HOH . 
Y 5 HOH A 37 437 351 HOH HOH . 
Y 5 HOH A 38 438 362 HOH HOH . 
Y 5 HOH A 39 439 365 HOH HOH . 
Y 5 HOH A 40 440 367 HOH HOH . 
Y 5 HOH A 41 441 368 HOH HOH . 
Y 5 HOH A 42 442 369 HOH HOH . 
Y 5 HOH A 43 443 378 HOH HOH . 
Y 5 HOH A 44 444 391 HOH HOH . 
Y 5 HOH A 45 445 399 HOH HOH . 
Y 5 HOH A 46 446 400 HOH HOH . 
Y 5 HOH A 47 447 405 HOH HOH . 
Y 5 HOH A 48 448 407 HOH HOH . 
Y 5 HOH A 49 449 413 HOH HOH . 
Y 5 HOH A 50 450 422 HOH HOH . 
Z 5 HOH B 1 401 228 HOH HOH . 
Z 5 HOH B 2 402 234 HOH HOH . 
Z 5 HOH B 3 403 236 HOH HOH . 
Z 5 HOH B 4 404 239 HOH HOH . 
Z 5 HOH B 5 405 244 HOH HOH . 
Z 5 HOH B 6 406 249 HOH HOH . 
Z 5 HOH B 7 407 251 HOH HOH . 
Z 5 HOH B 8 408 252 HOH HOH . 
Z 5 HOH B 9 409 253 HOH HOH . 
Z 5 HOH B 10 410 254 HOH HOH . 
Z 5 HOH B 11 411 259 HOH HOH . 
Z 5 HOH B 12 412 269 HOH HOH . 
Z 5 HOH B 13 413 271 HOH HOH . 
Z 5 HOH B 14 414 272 HOH HOH . 
Z 5 HOH B 15 415 276 HOH HOH . 
Z 5 HOH B 16 416 285 HOH HOH . 
Z 5 HOH B 17 417 299 HOH HOH . 
Z 5 HOH B 18 418 300 HOH HOH . 
Z 5 HOH B 19 419 303 HOH HOH . 
Z 5 HOH B 20 420 304 HOH HOH . 
Z 5 HOH B 21 421 308 HOH HOH . 
Z 5 HOH B 22 422 312 HOH HOH . 
Z 5 HOH B 23 423 318 HOH HOH . 
Z 5 HOH B 24 424 322 HOH HOH . 
Z 5 HOH B 25 425 324 HOH HOH . 
Z 5 HOH B 26 426 329 HOH HOH . 
Z 5 HOH B 27 427 335 HOH HOH . 
Z 5 HOH B 28 428 339 HOH HOH . 
Z 5 HOH B 29 429 349 HOH HOH . 
Z 5 HOH B 30 430 361 HOH HOH . 
Z 5 HOH B 31 431 371 HOH HOH . 
Z 5 HOH B 32 432 373 HOH HOH . 
Z 5 HOH B 33 433 374 HOH HOH . 
Z 5 HOH B 34 434 384 HOH HOH . 
Z 5 HOH B 35 435 386 HOH HOH . 
Z 5 HOH B 36 436 396 HOH HOH . 
Z 5 HOH B 37 437 398 HOH HOH . 
Z 5 HOH B 38 438 408 HOH HOH . 
Z 5 HOH B 39 439 409 HOH HOH . 
Z 5 HOH B 40 440 410 HOH HOH . 
Z 5 HOH B 41 441 411 HOH HOH . 
Z 5 HOH B 42 442 423 HOH HOH . 
AA 5 HOH C 1 401 273 HOH HOH . 
AA 5 HOH C 2 402 314 HOH HOH . 
AA 5 HOH C 3 403 310 HOH HOH . 
AA 5 HOH C 4 404 243 HOH HOH . 
AA 5 HOH C 5 405 291 HOH HOH . 
AA 5 HOH C 6 406 315 HOH HOH . 
AA 5 HOH C 7 407 232 HOH HOH . 
AA 5 HOH C 8 408 262 HOH HOH . 
AA 5 HOH C 9 409 356 HOH HOH . 
AA 5 HOH C 10 410 344 HOH HOH . 
AA 5 HOH C 11 411 247 HOH HOH . 
AA 5 HOH C 12 412 372 HOH HOH . 
AA 5 HOH C 13 413 404 HOH HOH . 
AA 5 HOH C 14 414 383 HOH HOH . 
AA 5 HOH C 15 415 229 HOH HOH . 
AA 5 HOH C 16 416 233 HOH HOH . 
AA 5 HOH C 17 417 237 HOH HOH . 
AA 5 HOH C 18 418 238 HOH HOH . 
AA 5 HOH C 19 419 240 HOH HOH . 
AA 5 HOH C 20 420 241 HOH HOH . 
AA 5 HOH C 21 421 246 HOH HOH . 
AA 5 HOH C 22 422 257 HOH HOH . 
AA 5 HOH C 23 423 261 HOH HOH . 
AA 5 HOH C 24 424 263 HOH HOH . 
AA 5 HOH C 25 425 265 HOH HOH . 
AA 5 HOH C 26 426 281 HOH HOH . 
AA 5 HOH C 27 427 283 HOH HOH . 
AA 5 HOH C 28 428 295 HOH HOH . 
AA 5 HOH C 29 429 301 HOH HOH . 
AA 5 HOH C 30 430 307 HOH HOH . 
AA 5 HOH C 31 431 313 HOH HOH . 
AA 5 HOH C 32 432 319 HOH HOH . 
AA 5 HOH C 33 433 330 HOH HOH . 
AA 5 HOH C 34 434 334 HOH HOH . 
AA 5 HOH C 35 435 338 HOH HOH . 
AA 5 HOH C 36 436 342 HOH HOH . 
AA 5 HOH C 37 437 345 HOH HOH . 
AA 5 HOH C 38 438 346 HOH HOH . 
AA 5 HOH C 39 439 348 HOH HOH . 
AA 5 HOH C 40 440 350 HOH HOH . 
AA 5 HOH C 41 441 352 HOH HOH . 
AA 5 HOH C 42 442 359 HOH HOH . 
AA 5 HOH C 43 443 376 HOH HOH . 
AA 5 HOH C 44 444 377 HOH HOH . 
AA 5 HOH C 45 445 379 HOH HOH . 
AA 5 HOH C 46 446 381 HOH HOH . 
AA 5 HOH C 47 447 388 HOH HOH . 
AA 5 HOH C 48 448 392 HOH HOH . 
AA 5 HOH C 49 449 393 HOH HOH . 
AA 5 HOH C 50 450 412 HOH HOH . 
AA 5 HOH C 51 451 414 HOH HOH . 
AA 5 HOH C 52 452 419 HOH HOH . 
AA 5 HOH C 53 453 421 HOH HOH . 
AA 5 HOH C 54 454 424 HOH HOH . 
BA 5 HOH D 1 401 387 HOH HOH . 
BA 5 HOH D 2 402 280 HOH HOH . 
BA 5 HOH D 3 403 305 HOH HOH . 
BA 5 HOH D 4 404 347 HOH HOH . 
BA 5 HOH D 5 405 286 HOH HOH . 
BA 5 HOH D 6 406 382 HOH HOH . 
BA 5 HOH D 7 407 230 HOH HOH . 
BA 5 HOH D 8 408 235 HOH HOH . 
BA 5 HOH D 9 409 242 HOH HOH . 
BA 5 HOH D 10 410 245 HOH HOH . 
BA 5 HOH D 11 411 250 HOH HOH . 
BA 5 HOH D 12 412 255 HOH HOH . 
BA 5 HOH D 13 413 264 HOH HOH . 
BA 5 HOH D 14 414 267 HOH HOH . 
BA 5 HOH D 15 415 278 HOH HOH . 
BA 5 HOH D 16 416 282 HOH HOH . 
BA 5 HOH D 17 417 287 HOH HOH . 
BA 5 HOH D 18 418 289 HOH HOH . 
BA 5 HOH D 19 419 292 HOH HOH . 
BA 5 HOH D 20 420 293 HOH HOH . 
BA 5 HOH D 21 421 297 HOH HOH . 
BA 5 HOH D 22 422 302 HOH HOH . 
BA 5 HOH D 23 423 306 HOH HOH . 
BA 5 HOH D 24 424 311 HOH HOH . 
BA 5 HOH D 25 425 317 HOH HOH . 
BA 5 HOH D 26 426 323 HOH HOH . 
BA 5 HOH D 27 427 328 HOH HOH . 
BA 5 HOH D 28 428 332 HOH HOH . 
BA 5 HOH D 29 429 340 HOH HOH . 
BA 5 HOH D 30 430 341 HOH HOH . 
BA 5 HOH D 31 431 353 HOH HOH . 
BA 5 HOH D 32 432 354 HOH HOH . 
BA 5 HOH D 33 433 355 HOH HOH . 
BA 5 HOH D 34 434 358 HOH HOH . 
BA 5 HOH D 35 435 363 HOH HOH . 
BA 5 HOH D 36 436 364 HOH HOH . 
BA 5 HOH D 37 437 366 HOH HOH . 
BA 5 HOH D 38 438 370 HOH HOH . 
BA 5 HOH D 39 439 380 HOH HOH . 
BA 5 HOH D 40 440 385 HOH HOH . 
BA 5 HOH D 41 441 389 HOH HOH . 
BA 5 HOH D 42 442 390 HOH HOH . 
BA 5 HOH D 43 443 394 HOH HOH . 
BA 5 HOH D 44 444 395 HOH HOH . 
BA 5 HOH D 45 445 397 HOH HOH . 
BA 5 HOH D 46 446 401 HOH HOH . 
BA 5 HOH D 47 447 402 HOH HOH . 
BA 5 HOH D 48 448 415 HOH HOH . 
BA 5 HOH D 49 449 416 HOH HOH . 
BA 5 HOH D 50 450 417 HOH HOH . 
BA 5 HOH D 51 451 418 HOH HOH . 
BA 5 HOH D 52 452 420 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . U 4 4.251 25.741 56.967 1 96.03 ? C1 PEG 301 D 1 
HETATM 2 O O1 PEG . . . U 4 4.707 24.635 57.73 1 96.23 ? O1 PEG 301 D 1 
HETATM 3 C C2 PEG . . . U 4 3.997 26.95 57.821 1 95.66 ? C2 PEG 301 D 1 
HETATM 4 O O2 PEG . . . U 4 5.176 27.318 58.53 1 95.44 ? O2 PEG 301 D 1 
HETATM 5 C C3 PEG . . . U 4 5.495 28.706 58.455 1 94.89 ? C3 PEG 301 D 1 
HETATM 6 C C4 PEG . . . U 4 6.777 28.981 59.183 1 93.93 ? C4 PEG 301 D 1 
HETATM 7 O O4 PEG . . . U 4 7.237 30.31 58.987 1 93.14 ? O4 PEG 301 D 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#