data_4YGW # _model_server_result.job_id tQzigzAOnHYUq16FNhajpg _model_server_result.datetime_utc '2024-11-08 15:09:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ygw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4YGW # _exptl.entry_id 4YGW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YGW _cell.length_a 28.562 _cell.length_b 87.108 _cell.length_c 45.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YGW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 5 B CYS 26 1_555 B SG CYS 63 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 19 B CYS 40 1_555 B SG CYS 74 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 37 B CYS 58 1_555 B SG CYS 89 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 B SG CYS 44 B CYS 65 1_555 B SG CYS 51 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A C ACE 1 b ACE 1 1_555 A N LYS 2 b LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ALA 6 b ALA 6 1_555 A N HCS 7 b HCS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C HCS 7 b HCS 7 1_555 A N LYS 8 b LYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A SD HCS 7 b HCS 7 1_555 C CM2 4Y8 . b 4Y8 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale5 A C GLU 10 b GLU 10 1_555 A N HCS 11 b HCS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C HCS 11 b HCS 11 1_555 A N GLN 12 b GLN 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A SD HCS 11 b HCS 11 1_555 C CM1 4Y8 . b 4Y8 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.699 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 322 n n S O2 SO4 doub 323 n n S O3 SO4 sing 324 n n S O4 SO4 sing 325 n n # _atom_sites.entry_id 4YGW _atom_sites.fract_transf_matrix[1][1] 0.035012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 4Y8 b 1 101 1 4Y8 4Y8 . D 4 SO4 B 1 201 1 SO4 SO4 . E 4 SO4 B 1 202 2 SO4 SO4 . F 5 HOH b 1 201 13 HOH HOH . F 5 HOH b 2 202 6 HOH HOH . F 5 HOH b 3 203 34 HOH HOH . F 5 HOH b 4 204 65 HOH HOH . F 5 HOH b 5 205 21 HOH HOH . F 5 HOH b 6 206 36 HOH HOH . F 5 HOH b 7 207 64 HOH HOH . F 5 HOH b 8 208 75 HOH HOH . F 5 HOH b 9 209 33 HOH HOH . F 5 HOH b 10 210 7 HOH HOH . F 5 HOH b 11 211 38 HOH HOH . F 5 HOH b 12 212 71 HOH HOH . F 5 HOH b 13 213 4 HOH HOH . F 5 HOH b 14 214 53 HOH HOH . F 5 HOH b 15 215 70 HOH HOH . G 5 HOH B 1 301 18 HOH HOH . G 5 HOH B 2 302 49 HOH HOH . G 5 HOH B 3 303 26 HOH HOH . G 5 HOH B 4 304 63 HOH HOH . G 5 HOH B 5 305 28 HOH HOH . G 5 HOH B 6 306 1 HOH HOH . G 5 HOH B 7 307 8 HOH HOH . G 5 HOH B 8 308 19 HOH HOH . G 5 HOH B 9 309 35 HOH HOH . G 5 HOH B 10 310 57 HOH HOH . G 5 HOH B 11 311 20 HOH HOH . G 5 HOH B 12 312 66 HOH HOH . G 5 HOH B 13 313 24 HOH HOH . G 5 HOH B 14 314 23 HOH HOH . G 5 HOH B 15 315 11 HOH HOH . G 5 HOH B 16 316 76 HOH HOH . G 5 HOH B 17 317 48 HOH HOH . G 5 HOH B 18 318 61 HOH HOH . G 5 HOH B 19 319 45 HOH HOH . G 5 HOH B 20 320 44 HOH HOH . G 5 HOH B 21 321 32 HOH HOH . G 5 HOH B 22 322 31 HOH HOH . G 5 HOH B 23 323 81 HOH HOH . G 5 HOH B 24 324 67 HOH HOH . G 5 HOH B 25 325 73 HOH HOH . G 5 HOH B 26 326 74 HOH HOH . G 5 HOH B 27 327 37 HOH HOH . G 5 HOH B 28 328 3 HOH HOH . G 5 HOH B 29 329 5 HOH HOH . G 5 HOH B 30 330 9 HOH HOH . G 5 HOH B 31 331 10 HOH HOH . G 5 HOH B 32 332 12 HOH HOH . G 5 HOH B 33 333 14 HOH HOH . G 5 HOH B 34 334 15 HOH HOH . G 5 HOH B 35 335 16 HOH HOH . G 5 HOH B 36 336 17 HOH HOH . G 5 HOH B 37 337 22 HOH HOH . G 5 HOH B 38 338 25 HOH HOH . G 5 HOH B 39 339 27 HOH HOH . G 5 HOH B 40 340 29 HOH HOH . G 5 HOH B 41 341 30 HOH HOH . G 5 HOH B 42 342 39 HOH HOH . G 5 HOH B 43 343 40 HOH HOH . G 5 HOH B 44 344 41 HOH HOH . G 5 HOH B 45 345 42 HOH HOH . G 5 HOH B 46 346 43 HOH HOH . G 5 HOH B 47 347 47 HOH HOH . G 5 HOH B 48 348 51 HOH HOH . G 5 HOH B 49 349 54 HOH HOH . G 5 HOH B 50 350 56 HOH HOH . G 5 HOH B 51 351 58 HOH HOH . G 5 HOH B 52 352 59 HOH HOH . G 5 HOH B 53 353 60 HOH HOH . G 5 HOH B 54 354 62 HOH HOH . G 5 HOH B 55 355 68 HOH HOH . G 5 HOH B 56 356 69 HOH HOH . G 5 HOH B 57 357 72 HOH HOH . G 5 HOH B 58 358 77 HOH HOH . G 5 HOH B 59 359 78 HOH HOH . G 5 HOH B 60 360 79 HOH HOH . G 5 HOH B 61 361 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 4 -5.341 -4.841 15.117 1 55.53 ? S SO4 201 B 1 HETATM 2 O O1 SO4 . . . D 4 -4.848 -4.223 13.89 1 27.67 ? O1 SO4 201 B 1 HETATM 3 O O2 SO4 . . . D 4 -6.789 -5.006 15.029 1 43.23 ? O2 SO4 201 B 1 HETATM 4 O O3 SO4 . . . D 4 -4.712 -6.148 15.29 1 43.82 ? O3 SO4 201 B 1 HETATM 5 O O4 SO4 . . . D 4 -5.021 -3.984 16.257 1 44.2 ? O4 SO4 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #