data_4YGY
#
_model_server_result.job_id            hCrQ2zrj4rKLuXDSjDZ14A 
_model_server_result.datetime_utc      '2025-07-30 19:41:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ygy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    4YGY 
#
_exptl.entry_id    4YGY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.59 
_cell.angle_gamma         90 
_cell.entry_id            4YGY 
_cell.length_a            125.28 
_cell.length_b            78.335 
_cell.length_c            63.031 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YGY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G 1 1 
B,D,F,H,I 2 1 
A,C,E,G 3 1 
B,D,F,H,I 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C THR 7 C THR 4 1_555 C N 4CG 8 C 4CG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale2 D C THR 7 D THR 4 1_555 D N 4CG 8 D 4CG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
metalc ? metalc1 A OD1 ASN 24 A ASN 96 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc2 A O ASP 26 A ASP 98 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc3 A OD1 ASN 135 A ASN 207 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc4 E MG MG . A MG 301 1_555 G O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc5 E MG MG . A MG 301 1_555 G O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc6 E MG MG . A MG 301 1_555 C O06 4CG 8 C 4CG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? 
metalc ? metalc7 B O ASP 26 B ASP 98 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc8 B OD1 ASN 135 B ASN 207 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc9 F MG MG . B MG 301 1_555 H O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc10 F MG MG . B MG 301 1_555 H O HOH . B HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc11 F MG MG . B MG 301 1_555 D O08 4CG 8 D 4CG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? 
metalc ? metalc12 F MG MG . B MG 301 1_555 I O HOH . D HOH 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4YGY 
_atom_sites.fract_transf_matrix[1][1]    0.007982 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003321 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012766 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017184 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MG A 1 301 257 MG MG . 
F 3 MG B 1 301 257 MG MG . 
G 4 HOH A 1 401 72 HOH HOH . 
G 4 HOH A 2 402 11 HOH HOH . 
G 4 HOH A 3 403 74 HOH HOH . 
G 4 HOH A 4 404 14 HOH HOH . 
G 4 HOH A 5 405 46 HOH HOH . 
G 4 HOH A 6 406 54 HOH HOH . 
G 4 HOH A 7 407 15 HOH HOH . 
G 4 HOH A 8 408 28 HOH HOH . 
G 4 HOH A 9 409 3 HOH HOH . 
G 4 HOH A 10 410 80 HOH HOH . 
G 4 HOH A 11 411 132 HOH HOH . 
G 4 HOH A 12 412 131 HOH HOH . 
G 4 HOH A 13 413 38 HOH HOH . 
G 4 HOH A 14 414 69 HOH HOH . 
G 4 HOH A 15 415 15 HOH HOH . 
G 4 HOH A 16 416 32 HOH HOH . 
G 4 HOH A 17 417 19 HOH HOH . 
G 4 HOH A 18 418 1 HOH HOH . 
G 4 HOH A 19 419 5 HOH HOH . 
G 4 HOH A 20 420 28 HOH HOH . 
G 4 HOH A 21 421 29 HOH HOH . 
G 4 HOH A 22 422 14 HOH HOH . 
G 4 HOH A 23 423 18 HOH HOH . 
G 4 HOH A 24 424 100 HOH HOH . 
G 4 HOH A 25 425 95 HOH HOH . 
G 4 HOH A 26 426 55 HOH HOH . 
G 4 HOH A 27 427 130 HOH HOH . 
G 4 HOH A 28 428 44 HOH HOH . 
H 4 HOH B 1 401 16 HOH HOH . 
H 4 HOH B 2 402 1 HOH HOH . 
H 4 HOH B 3 403 4 HOH HOH . 
H 4 HOH B 4 404 18 HOH HOH . 
H 4 HOH B 5 405 45 HOH HOH . 
H 4 HOH B 6 406 30 HOH HOH . 
H 4 HOH B 7 407 51 HOH HOH . 
H 4 HOH B 8 408 134 HOH HOH . 
H 4 HOH B 9 409 39 HOH HOH . 
H 4 HOH B 10 410 41 HOH HOH . 
H 4 HOH B 11 411 135 HOH HOH . 
H 4 HOH B 12 412 33 HOH HOH . 
H 4 HOH B 13 413 27 HOH HOH . 
H 4 HOH B 14 414 114 HOH HOH . 
H 4 HOH B 15 415 12 HOH HOH . 
H 4 HOH B 16 416 11 HOH HOH . 
H 4 HOH B 17 417 16 HOH HOH . 
H 4 HOH B 18 418 30 HOH HOH . 
H 4 HOH B 19 419 1 HOH HOH . 
H 4 HOH B 20 420 46 HOH HOH . 
H 4 HOH B 21 421 104 HOH HOH . 
H 4 HOH B 22 422 45 HOH HOH . 
H 4 HOH B 23 423 113 HOH HOH . 
H 4 HOH B 24 424 34 HOH HOH . 
H 4 HOH B 25 425 112 HOH HOH . 
H 4 HOH B 26 426 128 HOH HOH . 
H 4 HOH B 27 427 47 HOH HOH . 
H 4 HOH B 28 428 90 HOH HOH . 
H 4 HOH B 29 429 103 HOH HOH . 
H 4 HOH B 30 430 68 HOH HOH . 
H 4 HOH B 31 431 89 HOH HOH . 
H 4 HOH B 32 432 88 HOH HOH . 
H 4 HOH B 33 433 105 HOH HOH . 
I 4 HOH D 1 101 133 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               141.508 
_atom_site.Cartn_y               -0.84 
_atom_site.Cartn_z               28.978 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        51.33 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#