data_4YHT # _model_server_result.job_id QLj9BDOKQ2alyn21QJuecQ _model_server_result.datetime_utc '2024-11-22 07:56:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yht # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 4YHT # _exptl.entry_id 4YHT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YHT _cell.length_a 99.783 _cell.length_b 99.783 _cell.length_c 161.504 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YHT _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 179 n n C1 C2 GOL sing 180 n n C1 H11 GOL sing 181 n n C1 H12 GOL sing 182 n n O1 HO1 GOL sing 183 n n C2 O2 GOL sing 184 n n C2 C3 GOL sing 185 n n C2 H2 GOL sing 186 n n O2 HO2 GOL sing 187 n n C3 O3 GOL sing 188 n n C3 H31 GOL sing 189 n n C3 H32 GOL sing 190 n n O3 HO3 GOL sing 191 n n # _atom_sites.entry_id 4YHT _atom_sites.fract_transf_matrix[1][1] 0.010022 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 1001 1001 GOL GOL . D 3 4EF A 1 1002 2001 4EF GSK . E 2 GOL B 1 801 1002 GOL GOL . F 3 4EF B 1 802 2001 4EF GSK . G 4 HOH A 1 1101 18 HOH HOH . G 4 HOH A 2 1102 35 HOH HOH . G 4 HOH A 3 1103 1 HOH HOH . G 4 HOH A 4 1104 4 HOH HOH . G 4 HOH A 5 1105 5 HOH HOH . G 4 HOH A 6 1106 7 HOH HOH . G 4 HOH A 7 1107 8 HOH HOH . G 4 HOH A 8 1108 9 HOH HOH . G 4 HOH A 9 1109 10 HOH HOH . G 4 HOH A 10 1110 13 HOH HOH . G 4 HOH A 11 1111 15 HOH HOH . G 4 HOH A 12 1112 17 HOH HOH . G 4 HOH A 13 1113 19 HOH HOH . G 4 HOH A 14 1114 21 HOH HOH . G 4 HOH A 15 1115 24 HOH HOH . G 4 HOH A 16 1116 25 HOH HOH . G 4 HOH A 17 1117 26 HOH HOH . G 4 HOH A 18 1118 30 HOH HOH . G 4 HOH A 19 1119 34 HOH HOH . G 4 HOH A 20 1120 36 HOH HOH . G 4 HOH A 21 1121 37 HOH HOH . G 4 HOH A 22 1122 38 HOH HOH . G 4 HOH A 23 1123 43 HOH HOH . G 4 HOH A 24 1124 46 HOH HOH . G 4 HOH A 25 1125 47 HOH HOH . G 4 HOH A 26 1126 49 HOH HOH . G 4 HOH A 27 1127 50 HOH HOH . G 4 HOH A 28 1128 51 HOH HOH . G 4 HOH A 29 1129 53 HOH HOH . G 4 HOH A 30 1130 54 HOH HOH . G 4 HOH A 31 1131 56 HOH HOH . G 4 HOH A 32 1132 57 HOH HOH . G 4 HOH A 33 1133 58 HOH HOH . G 4 HOH A 34 1134 60 HOH HOH . G 4 HOH A 35 1135 62 HOH HOH . G 4 HOH A 36 1136 63 HOH HOH . G 4 HOH A 37 1137 65 HOH HOH . G 4 HOH A 38 1138 72 HOH HOH . H 4 HOH B 1 901 16 HOH HOH . H 4 HOH B 2 902 2 HOH HOH . H 4 HOH B 3 903 45 HOH HOH . H 4 HOH B 4 904 31 HOH HOH . H 4 HOH B 5 905 3 HOH HOH . H 4 HOH B 6 906 6 HOH HOH . H 4 HOH B 7 907 11 HOH HOH . H 4 HOH B 8 908 12 HOH HOH . H 4 HOH B 9 909 14 HOH HOH . H 4 HOH B 10 910 20 HOH HOH . H 4 HOH B 11 911 22 HOH HOH . H 4 HOH B 12 912 23 HOH HOH . H 4 HOH B 13 913 27 HOH HOH . H 4 HOH B 14 914 28 HOH HOH . H 4 HOH B 15 915 29 HOH HOH . H 4 HOH B 16 916 32 HOH HOH . H 4 HOH B 17 917 33 HOH HOH . H 4 HOH B 18 918 39 HOH HOH . H 4 HOH B 19 919 40 HOH HOH . H 4 HOH B 20 920 41 HOH HOH . H 4 HOH B 21 921 42 HOH HOH . H 4 HOH B 22 922 44 HOH HOH . H 4 HOH B 23 923 48 HOH HOH . H 4 HOH B 24 924 52 HOH HOH . H 4 HOH B 25 925 55 HOH HOH . H 4 HOH B 26 926 59 HOH HOH . H 4 HOH B 27 927 61 HOH HOH . H 4 HOH B 28 928 64 HOH HOH . H 4 HOH B 29 929 66 HOH HOH . H 4 HOH B 30 930 67 HOH HOH . H 4 HOH B 31 931 68 HOH HOH . H 4 HOH B 32 932 69 HOH HOH . H 4 HOH B 33 933 70 HOH HOH . H 4 HOH B 34 934 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -24.824 -29.842 -27.012 1 48.37 ? C1 GOL 1001 A 1 HETATM 2 O O1 GOL . . . C 2 -25.562 -28.768 -26.42 1 50.21 ? O1 GOL 1001 A 1 HETATM 3 C C2 GOL . . . C 2 -24.088 -30.511 -25.864 1 46.88 ? C2 GOL 1001 A 1 HETATM 4 O O2 GOL . . . C 2 -22.72 -30.091 -25.887 1 44.89 ? O2 GOL 1001 A 1 HETATM 5 C C3 GOL . . . C 2 -24.222 -32.025 -25.94 1 47.29 ? C3 GOL 1001 A 1 HETATM 6 O O3 GOL . . . C 2 -25.272 -32.402 -25.036 1 47.83 ? O3 GOL 1001 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #