data_4YHT
#
_model_server_result.job_id            joWmWjrK5havauq1PFOp_A 
_model_server_result.datetime_utc      '2024-11-22 07:53:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yht 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":801}' 
#
_entry.id    4YHT 
#
_exptl.entry_id    4YHT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YHT 
_cell.length_a            99.783 
_cell.length_b            99.783 
_cell.length_c            161.504 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YHT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 179 n n 
C1 C2 GOL sing 180 n n 
C1 H11 GOL sing 181 n n 
C1 H12 GOL sing 182 n n 
O1 HO1 GOL sing 183 n n 
C2 O2 GOL sing 184 n n 
C2 C3 GOL sing 185 n n 
C2 H2 GOL sing 186 n n 
O2 HO2 GOL sing 187 n n 
C3 O3 GOL sing 188 n n 
C3 H31 GOL sing 189 n n 
C3 H32 GOL sing 190 n n 
O3 HO3 GOL sing 191 n n 
#
_atom_sites.entry_id                     4YHT 
_atom_sites.fract_transf_matrix[1][1]    0.010022 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010022 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006192 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 1001 1001 GOL GOL . 
D 3 4EF A 1 1002 2001 4EF GSK . 
E 2 GOL B 1 801 1002 GOL GOL . 
F 3 4EF B 1 802 2001 4EF GSK . 
G 4 HOH A 1 1101 18 HOH HOH . 
G 4 HOH A 2 1102 35 HOH HOH . 
G 4 HOH A 3 1103 1 HOH HOH . 
G 4 HOH A 4 1104 4 HOH HOH . 
G 4 HOH A 5 1105 5 HOH HOH . 
G 4 HOH A 6 1106 7 HOH HOH . 
G 4 HOH A 7 1107 8 HOH HOH . 
G 4 HOH A 8 1108 9 HOH HOH . 
G 4 HOH A 9 1109 10 HOH HOH . 
G 4 HOH A 10 1110 13 HOH HOH . 
G 4 HOH A 11 1111 15 HOH HOH . 
G 4 HOH A 12 1112 17 HOH HOH . 
G 4 HOH A 13 1113 19 HOH HOH . 
G 4 HOH A 14 1114 21 HOH HOH . 
G 4 HOH A 15 1115 24 HOH HOH . 
G 4 HOH A 16 1116 25 HOH HOH . 
G 4 HOH A 17 1117 26 HOH HOH . 
G 4 HOH A 18 1118 30 HOH HOH . 
G 4 HOH A 19 1119 34 HOH HOH . 
G 4 HOH A 20 1120 36 HOH HOH . 
G 4 HOH A 21 1121 37 HOH HOH . 
G 4 HOH A 22 1122 38 HOH HOH . 
G 4 HOH A 23 1123 43 HOH HOH . 
G 4 HOH A 24 1124 46 HOH HOH . 
G 4 HOH A 25 1125 47 HOH HOH . 
G 4 HOH A 26 1126 49 HOH HOH . 
G 4 HOH A 27 1127 50 HOH HOH . 
G 4 HOH A 28 1128 51 HOH HOH . 
G 4 HOH A 29 1129 53 HOH HOH . 
G 4 HOH A 30 1130 54 HOH HOH . 
G 4 HOH A 31 1131 56 HOH HOH . 
G 4 HOH A 32 1132 57 HOH HOH . 
G 4 HOH A 33 1133 58 HOH HOH . 
G 4 HOH A 34 1134 60 HOH HOH . 
G 4 HOH A 35 1135 62 HOH HOH . 
G 4 HOH A 36 1136 63 HOH HOH . 
G 4 HOH A 37 1137 65 HOH HOH . 
G 4 HOH A 38 1138 72 HOH HOH . 
H 4 HOH B 1 901 16 HOH HOH . 
H 4 HOH B 2 902 2 HOH HOH . 
H 4 HOH B 3 903 45 HOH HOH . 
H 4 HOH B 4 904 31 HOH HOH . 
H 4 HOH B 5 905 3 HOH HOH . 
H 4 HOH B 6 906 6 HOH HOH . 
H 4 HOH B 7 907 11 HOH HOH . 
H 4 HOH B 8 908 12 HOH HOH . 
H 4 HOH B 9 909 14 HOH HOH . 
H 4 HOH B 10 910 20 HOH HOH . 
H 4 HOH B 11 911 22 HOH HOH . 
H 4 HOH B 12 912 23 HOH HOH . 
H 4 HOH B 13 913 27 HOH HOH . 
H 4 HOH B 14 914 28 HOH HOH . 
H 4 HOH B 15 915 29 HOH HOH . 
H 4 HOH B 16 916 32 HOH HOH . 
H 4 HOH B 17 917 33 HOH HOH . 
H 4 HOH B 18 918 39 HOH HOH . 
H 4 HOH B 19 919 40 HOH HOH . 
H 4 HOH B 20 920 41 HOH HOH . 
H 4 HOH B 21 921 42 HOH HOH . 
H 4 HOH B 22 922 44 HOH HOH . 
H 4 HOH B 23 923 48 HOH HOH . 
H 4 HOH B 24 924 52 HOH HOH . 
H 4 HOH B 25 925 55 HOH HOH . 
H 4 HOH B 26 926 59 HOH HOH . 
H 4 HOH B 27 927 61 HOH HOH . 
H 4 HOH B 28 928 64 HOH HOH . 
H 4 HOH B 29 929 66 HOH HOH . 
H 4 HOH B 30 930 67 HOH HOH . 
H 4 HOH B 31 931 68 HOH HOH . 
H 4 HOH B 32 932 69 HOH HOH . 
H 4 HOH B 33 933 70 HOH HOH . 
H 4 HOH B 34 934 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 2 -41.34 -42.477 -62.929 1 60.31 ? C1 GOL 801 B 1 
HETATM 2 O O1 GOL . . . E 2 -40.519 -41.655 -62.1 1 60.04 ? O1 GOL 801 B 1 
HETATM 3 C C2 GOL . . . E 2 -42.116 -43.404 -62.019 1 60.54 ? C2 GOL 801 B 1 
HETATM 4 O O2 GOL . . . E 2 -42.216 -44.662 -62.698 1 63.25 ? O2 GOL 801 B 1 
HETATM 5 C C3 GOL . . . E 2 -43.482 -42.779 -61.724 1 59.35 ? C3 GOL 801 B 1 
HETATM 6 O O3 GOL . . . E 2 -43.709 -42.679 -60.31 1 57.16 ? O3 GOL 801 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#