data_4YI8 # _model_server_result.job_id dte1lpt0NVeOXMtneZ4BJQ _model_server_result.datetime_utc '2024-10-28 02:33:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yi8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 4YI8 # _exptl.entry_id 4YI8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YI8 _cell.length_a 84.16 _cell.length_b 84.16 _cell.length_c 59.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 73 A ASP 74 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc2 A OD1 ASN 75 A ASN 76 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc3 A OD1 ASP 77 A ASP 78 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc4 A O THR 79 A THR 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc5 A OE1 GLU 84 A GLU 85 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc6 A OE2 GLU 84 A GLU 85 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc7 A OD1 ASP 109 A ASP 110 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc8 A OD1 ASP 111 A ASP 112 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc9 A OD1 ASN 113 A ASN 114 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc10 A O THR 115 A THR 116 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc11 A OE1 GLU 120 A GLU 121 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc12 A OE2 GLU 120 A GLU 121 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc13 B CA CA . A CA 301 1_555 F O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc14 C CA CA . A CA 302 1_555 F O HOH . A HOH 515 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.362 ? metalc ? metalc15 C CA CA . A CA 302 1_555 F O HOH . A HOH 515 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.404 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 4YI8 _atom_sites.fract_transf_matrix[1][1] 0.011882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 2 CA A 1 302 2 CA CA . D 3 SO4 A 1 303 1 SO4 SO4 . E 3 SO4 A 1 304 2 SO4 SO4 . F 4 HOH A 1 401 193 HOH HOH . F 4 HOH A 2 402 197 HOH HOH . F 4 HOH A 3 403 157 HOH HOH . F 4 HOH A 4 404 62 HOH HOH . F 4 HOH A 5 405 55 HOH HOH . F 4 HOH A 6 406 81 HOH HOH . F 4 HOH A 7 407 65 HOH HOH . F 4 HOH A 8 408 158 HOH HOH . F 4 HOH A 9 409 174 HOH HOH . F 4 HOH A 10 410 21 HOH HOH . F 4 HOH A 11 411 74 HOH HOH . F 4 HOH A 12 412 180 HOH HOH . F 4 HOH A 13 413 17 HOH HOH . F 4 HOH A 14 414 52 HOH HOH . F 4 HOH A 15 415 127 HOH HOH . F 4 HOH A 16 416 119 HOH HOH . F 4 HOH A 17 417 59 HOH HOH . F 4 HOH A 18 418 45 HOH HOH . F 4 HOH A 19 419 239 HOH HOH . F 4 HOH A 20 420 93 HOH HOH . F 4 HOH A 21 421 231 HOH HOH . F 4 HOH A 22 422 69 HOH HOH . F 4 HOH A 23 423 19 HOH HOH . F 4 HOH A 24 424 48 HOH HOH . F 4 HOH A 25 425 18 HOH HOH . F 4 HOH A 26 426 252 HOH HOH . F 4 HOH A 27 427 26 HOH HOH . F 4 HOH A 28 428 126 HOH HOH . F 4 HOH A 29 429 34 HOH HOH . F 4 HOH A 30 430 245 HOH HOH . F 4 HOH A 31 431 124 HOH HOH . F 4 HOH A 32 432 9 HOH HOH . F 4 HOH A 33 433 232 HOH HOH . F 4 HOH A 34 434 37 HOH HOH . F 4 HOH A 35 435 14 HOH HOH . F 4 HOH A 36 436 8 HOH HOH . F 4 HOH A 37 437 33 HOH HOH . F 4 HOH A 38 438 32 HOH HOH . F 4 HOH A 39 439 79 HOH HOH . F 4 HOH A 40 440 1 HOH HOH . F 4 HOH A 41 441 16 HOH HOH . F 4 HOH A 42 442 173 HOH HOH . F 4 HOH A 43 443 176 HOH HOH . F 4 HOH A 44 444 6 HOH HOH . F 4 HOH A 45 445 20 HOH HOH . F 4 HOH A 46 446 116 HOH HOH . F 4 HOH A 47 447 109 HOH HOH . F 4 HOH A 48 448 60 HOH HOH . F 4 HOH A 49 449 31 HOH HOH . F 4 HOH A 50 450 96 HOH HOH . F 4 HOH A 51 451 13 HOH HOH . F 4 HOH A 52 452 102 HOH HOH . F 4 HOH A 53 453 29 HOH HOH . F 4 HOH A 54 454 42 HOH HOH . F 4 HOH A 55 455 168 HOH HOH . F 4 HOH A 56 456 99 HOH HOH . F 4 HOH A 57 457 35 HOH HOH . F 4 HOH A 58 458 38 HOH HOH . F 4 HOH A 59 459 103 HOH HOH . F 4 HOH A 60 460 51 HOH HOH . F 4 HOH A 61 461 89 HOH HOH . F 4 HOH A 62 462 95 HOH HOH . F 4 HOH A 63 463 113 HOH HOH . F 4 HOH A 64 464 23 HOH HOH . F 4 HOH A 65 465 100 HOH HOH . F 4 HOH A 66 466 189 HOH HOH . F 4 HOH A 67 467 15 HOH HOH . F 4 HOH A 68 468 4 HOH HOH . F 4 HOH A 69 469 156 HOH HOH . F 4 HOH A 70 470 72 HOH HOH . F 4 HOH A 71 471 132 HOH HOH . F 4 HOH A 72 472 203 HOH HOH . F 4 HOH A 73 473 151 HOH HOH . F 4 HOH A 74 474 58 HOH HOH . F 4 HOH A 75 475 67 HOH HOH . F 4 HOH A 76 476 215 HOH HOH . F 4 HOH A 77 477 160 HOH HOH . F 4 HOH A 78 478 54 HOH HOH . F 4 HOH A 79 479 164 HOH HOH . F 4 HOH A 80 480 86 HOH HOH . F 4 HOH A 81 481 172 HOH HOH . F 4 HOH A 82 482 137 HOH HOH . F 4 HOH A 83 483 206 HOH HOH . F 4 HOH A 84 484 178 HOH HOH . F 4 HOH A 85 485 167 HOH HOH . F 4 HOH A 86 486 205 HOH HOH . F 4 HOH A 87 487 227 HOH HOH . F 4 HOH A 88 488 194 HOH HOH . F 4 HOH A 89 489 30 HOH HOH . F 4 HOH A 90 490 154 HOH HOH . F 4 HOH A 91 491 71 HOH HOH . F 4 HOH A 92 492 237 HOH HOH . F 4 HOH A 93 493 187 HOH HOH . F 4 HOH A 94 494 98 HOH HOH . F 4 HOH A 95 495 82 HOH HOH . F 4 HOH A 96 496 61 HOH HOH . F 4 HOH A 97 497 225 HOH HOH . F 4 HOH A 98 498 75 HOH HOH . F 4 HOH A 99 499 199 HOH HOH . F 4 HOH A 100 500 53 HOH HOH . F 4 HOH A 101 501 161 HOH HOH . F 4 HOH A 102 502 188 HOH HOH . F 4 HOH A 103 503 39 HOH HOH . F 4 HOH A 104 504 122 HOH HOH . F 4 HOH A 105 505 220 HOH HOH . F 4 HOH A 106 506 241 HOH HOH . F 4 HOH A 107 507 121 HOH HOH . F 4 HOH A 108 508 228 HOH HOH . F 4 HOH A 109 509 236 HOH HOH . F 4 HOH A 110 510 128 HOH HOH . F 4 HOH A 111 511 133 HOH HOH . F 4 HOH A 112 512 140 HOH HOH . F 4 HOH A 113 513 240 HOH HOH . F 4 HOH A 114 514 155 HOH HOH . F 4 HOH A 115 515 2 HOH HOH . F 4 HOH A 116 516 3 HOH HOH . F 4 HOH A 117 517 5 HOH HOH . F 4 HOH A 118 518 7 HOH HOH . F 4 HOH A 119 519 10 HOH HOH . F 4 HOH A 120 520 11 HOH HOH . F 4 HOH A 121 521 12 HOH HOH . F 4 HOH A 122 522 22 HOH HOH . F 4 HOH A 123 523 24 HOH HOH . F 4 HOH A 124 524 25 HOH HOH . F 4 HOH A 125 525 27 HOH HOH . F 4 HOH A 126 526 28 HOH HOH . F 4 HOH A 127 527 36 HOH HOH . F 4 HOH A 128 528 40 HOH HOH . F 4 HOH A 129 529 41 HOH HOH . F 4 HOH A 130 530 43 HOH HOH . F 4 HOH A 131 531 44 HOH HOH . F 4 HOH A 132 532 47 HOH HOH . F 4 HOH A 133 533 49 HOH HOH . F 4 HOH A 134 534 50 HOH HOH . F 4 HOH A 135 535 56 HOH HOH . F 4 HOH A 136 536 57 HOH HOH . F 4 HOH A 137 537 63 HOH HOH . F 4 HOH A 138 538 64 HOH HOH . F 4 HOH A 139 539 66 HOH HOH . F 4 HOH A 140 540 68 HOH HOH . F 4 HOH A 141 541 70 HOH HOH . F 4 HOH A 142 542 73 HOH HOH . F 4 HOH A 143 543 76 HOH HOH . F 4 HOH A 144 544 77 HOH HOH . F 4 HOH A 145 545 78 HOH HOH . F 4 HOH A 146 546 80 HOH HOH . F 4 HOH A 147 547 83 HOH HOH . F 4 HOH A 148 548 84 HOH HOH . F 4 HOH A 149 549 85 HOH HOH . F 4 HOH A 150 550 87 HOH HOH . F 4 HOH A 151 551 88 HOH HOH . F 4 HOH A 152 552 90 HOH HOH . F 4 HOH A 153 553 91 HOH HOH . F 4 HOH A 154 554 92 HOH HOH . F 4 HOH A 155 555 94 HOH HOH . F 4 HOH A 156 556 97 HOH HOH . F 4 HOH A 157 557 101 HOH HOH . F 4 HOH A 158 558 104 HOH HOH . F 4 HOH A 159 559 105 HOH HOH . F 4 HOH A 160 560 106 HOH HOH . F 4 HOH A 161 561 107 HOH HOH . F 4 HOH A 162 562 108 HOH HOH . F 4 HOH A 163 563 110 HOH HOH . F 4 HOH A 164 564 111 HOH HOH . F 4 HOH A 165 565 112 HOH HOH . F 4 HOH A 166 566 114 HOH HOH . F 4 HOH A 167 567 115 HOH HOH . F 4 HOH A 168 568 117 HOH HOH . F 4 HOH A 169 569 118 HOH HOH . F 4 HOH A 170 570 120 HOH HOH . F 4 HOH A 171 571 123 HOH HOH . F 4 HOH A 172 572 125 HOH HOH . F 4 HOH A 173 573 129 HOH HOH . F 4 HOH A 174 574 131 HOH HOH . F 4 HOH A 175 575 134 HOH HOH . F 4 HOH A 176 576 135 HOH HOH . F 4 HOH A 177 577 138 HOH HOH . F 4 HOH A 178 578 139 HOH HOH . F 4 HOH A 179 579 141 HOH HOH . F 4 HOH A 180 580 142 HOH HOH . F 4 HOH A 181 581 143 HOH HOH . F 4 HOH A 182 582 144 HOH HOH . F 4 HOH A 183 583 145 HOH HOH . F 4 HOH A 184 584 147 HOH HOH . F 4 HOH A 185 585 148 HOH HOH . F 4 HOH A 186 586 149 HOH HOH . F 4 HOH A 187 587 150 HOH HOH . F 4 HOH A 188 588 152 HOH HOH . F 4 HOH A 189 589 153 HOH HOH . F 4 HOH A 190 590 159 HOH HOH . F 4 HOH A 191 591 162 HOH HOH . F 4 HOH A 192 592 163 HOH HOH . F 4 HOH A 193 593 165 HOH HOH . F 4 HOH A 194 594 166 HOH HOH . F 4 HOH A 195 595 169 HOH HOH . F 4 HOH A 196 596 171 HOH HOH . F 4 HOH A 197 597 177 HOH HOH . F 4 HOH A 198 598 179 HOH HOH . F 4 HOH A 199 599 181 HOH HOH . F 4 HOH A 200 600 182 HOH HOH . F 4 HOH A 201 601 183 HOH HOH . F 4 HOH A 202 602 184 HOH HOH . F 4 HOH A 203 603 185 HOH HOH . F 4 HOH A 204 604 186 HOH HOH . F 4 HOH A 205 605 190 HOH HOH . F 4 HOH A 206 606 191 HOH HOH . F 4 HOH A 207 607 192 HOH HOH . F 4 HOH A 208 608 195 HOH HOH . F 4 HOH A 209 609 200 HOH HOH . F 4 HOH A 210 610 202 HOH HOH . F 4 HOH A 211 611 204 HOH HOH . F 4 HOH A 212 612 207 HOH HOH . F 4 HOH A 213 613 208 HOH HOH . F 4 HOH A 214 614 213 HOH HOH . F 4 HOH A 215 615 214 HOH HOH . F 4 HOH A 216 616 216 HOH HOH . F 4 HOH A 217 617 217 HOH HOH . F 4 HOH A 218 618 218 HOH HOH . F 4 HOH A 219 619 219 HOH HOH . F 4 HOH A 220 620 223 HOH HOH . F 4 HOH A 221 621 224 HOH HOH . F 4 HOH A 222 622 229 HOH HOH . F 4 HOH A 223 623 230 HOH HOH . F 4 HOH A 224 624 233 HOH HOH . F 4 HOH A 225 625 235 HOH HOH . F 4 HOH A 226 626 238 HOH HOH . F 4 HOH A 227 627 242 HOH HOH . F 4 HOH A 228 628 243 HOH HOH . F 4 HOH A 229 629 246 HOH HOH . F 4 HOH A 230 630 247 HOH HOH . F 4 HOH A 231 631 248 HOH HOH . F 4 HOH A 232 632 249 HOH HOH . F 4 HOH A 233 633 250 HOH HOH . F 4 HOH A 234 634 251 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 3 8.005 -37.3 13.765 0.9 50.95 ? S SO4 304 A 1 HETATM 2 O O1 SO4 . . . E 3 9.378 -37.356 13.253 0.9 50.9 ? O1 SO4 304 A 1 HETATM 3 O O2 SO4 . . . E 3 7.132 -38.118 12.924 0.9 51.01 ? O2 SO4 304 A 1 HETATM 4 O O3 SO4 . . . E 3 7.976 -37.804 15.138 0.9 50.51 ? O3 SO4 304 A 1 HETATM 5 O O4 SO4 . . . E 3 7.543 -35.914 13.744 0.9 52.31 ? O4 SO4 304 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #