data_4YIA # _model_server_result.job_id O60IXQI6o7QRFx73JfTpHQ _model_server_result.datetime_utc '2024-11-14 08:50:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yia # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4YIA # _exptl.entry_id 4YIA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YIA _cell.length_a 41.98 _cell.length_b 56.07 _cell.length_c 173.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 160 A SER 140 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc2 A OD1 ASN 212 A ASN 192 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc3 A OE1 GLN 240 A GLN 220 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 A OE1 GLU 242 A GLU 222 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc5 A OE1 GLU 242 A GLU 222 1_555 C CA CA . A CA 401 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc6 A OD2 ASP 341 A ASP 321 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc7 C CA CA . A CA 401 1_555 J O HOH . A HOH 511 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc8 C CA CA . A CA 401 1_555 J O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? metalc ? metalc9 C CA CA . A CA 401 1_555 J O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc10 E NA NA . A NA 403 1_555 J O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc11 E NA NA . A NA 403 1_555 J O HOH . A HOH 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc12 H CA CA . B CA 402 1_555 K O HOH . B HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YIA _atom_sites.fract_transf_matrix[1][1] 0.023821 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 401 1 CA CA . D 4 NA A 1 402 1 NA NA . E 4 NA A 1 403 1 NA NA . F 5 CL A 1 404 1 CL CL . G 6 IMN B 1 401 1 IMN IMN . H 3 CA B 1 402 1 CA CA . I 5 CL B 1 403 1 CL CL . J 7 HOH A 1 501 185 HOH HOH . J 7 HOH A 2 502 67 HOH HOH . J 7 HOH A 3 503 7 HOH HOH . J 7 HOH A 4 504 137 HOH HOH . J 7 HOH A 5 505 212 HOH HOH . J 7 HOH A 6 506 128 HOH HOH . J 7 HOH A 7 507 26 HOH HOH . J 7 HOH A 8 508 84 HOH HOH . J 7 HOH A 9 509 198 HOH HOH . J 7 HOH A 10 510 62 HOH HOH . J 7 HOH A 11 511 470 HOH HOH . J 7 HOH A 12 512 152 HOH HOH . J 7 HOH A 13 513 209 HOH HOH . J 7 HOH A 14 514 189 HOH HOH . J 7 HOH A 15 515 186 HOH HOH . J 7 HOH A 16 516 112 HOH HOH . J 7 HOH A 17 517 175 HOH HOH . J 7 HOH A 18 518 23 HOH HOH . J 7 HOH A 19 519 139 HOH HOH . J 7 HOH A 20 520 200 HOH HOH . J 7 HOH A 21 521 168 HOH HOH . J 7 HOH A 22 522 48 HOH HOH . J 7 HOH A 23 523 69 HOH HOH . J 7 HOH A 24 524 167 HOH HOH . J 7 HOH A 25 525 37 HOH HOH . J 7 HOH A 26 526 28 HOH HOH . J 7 HOH A 27 527 446 HOH HOH . J 7 HOH A 28 528 115 HOH HOH . J 7 HOH A 29 529 97 HOH HOH . J 7 HOH A 30 530 224 HOH HOH . J 7 HOH A 31 531 126 HOH HOH . J 7 HOH A 32 532 156 HOH HOH . J 7 HOH A 33 533 39 HOH HOH . J 7 HOH A 34 534 467 HOH HOH . J 7 HOH A 35 535 437 HOH HOH . J 7 HOH A 36 536 1 HOH HOH . J 7 HOH A 37 537 43 HOH HOH . J 7 HOH A 38 538 57 HOH HOH . J 7 HOH A 39 539 131 HOH HOH . J 7 HOH A 40 540 477 HOH HOH . J 7 HOH A 41 541 31 HOH HOH . J 7 HOH A 42 542 461 HOH HOH . J 7 HOH A 43 543 471 HOH HOH . J 7 HOH A 44 544 18 HOH HOH . J 7 HOH A 45 545 25 HOH HOH . J 7 HOH A 46 546 12 HOH HOH . J 7 HOH A 47 547 465 HOH HOH . J 7 HOH A 48 548 443 HOH HOH . J 7 HOH A 49 549 184 HOH HOH . J 7 HOH A 50 550 2 HOH HOH . J 7 HOH A 51 551 5 HOH HOH . J 7 HOH A 52 552 9 HOH HOH . J 7 HOH A 53 553 10 HOH HOH . J 7 HOH A 54 554 13 HOH HOH . J 7 HOH A 55 555 14 HOH HOH . J 7 HOH A 56 556 16 HOH HOH . J 7 HOH A 57 557 19 HOH HOH . J 7 HOH A 58 558 24 HOH HOH . J 7 HOH A 59 559 27 HOH HOH . J 7 HOH A 60 560 29 HOH HOH . J 7 HOH A 61 561 33 HOH HOH . J 7 HOH A 62 562 34 HOH HOH . J 7 HOH A 63 563 35 HOH HOH . J 7 HOH A 64 564 36 HOH HOH . J 7 HOH A 65 565 38 HOH HOH . J 7 HOH A 66 566 40 HOH HOH . J 7 HOH A 67 567 41 HOH HOH . J 7 HOH A 68 568 42 HOH HOH . J 7 HOH A 69 569 45 HOH HOH . J 7 HOH A 70 570 47 HOH HOH . J 7 HOH A 71 571 49 HOH HOH . J 7 HOH A 72 572 50 HOH HOH . J 7 HOH A 73 573 54 HOH HOH . J 7 HOH A 74 574 56 HOH HOH . J 7 HOH A 75 575 58 HOH HOH . J 7 HOH A 76 576 60 HOH HOH . J 7 HOH A 77 577 61 HOH HOH . J 7 HOH A 78 578 64 HOH HOH . J 7 HOH A 79 579 66 HOH HOH . J 7 HOH A 80 580 71 HOH HOH . J 7 HOH A 81 581 72 HOH HOH . J 7 HOH A 82 582 73 HOH HOH . J 7 HOH A 83 583 75 HOH HOH . J 7 HOH A 84 584 76 HOH HOH . J 7 HOH A 85 585 77 HOH HOH . J 7 HOH A 86 586 78 HOH HOH . J 7 HOH A 87 587 79 HOH HOH . J 7 HOH A 88 588 82 HOH HOH . J 7 HOH A 89 589 83 HOH HOH . J 7 HOH A 90 590 85 HOH HOH . J 7 HOH A 91 591 86 HOH HOH . J 7 HOH A 92 592 87 HOH HOH . J 7 HOH A 93 593 88 HOH HOH . J 7 HOH A 94 594 90 HOH HOH . J 7 HOH A 95 595 92 HOH HOH . J 7 HOH A 96 596 93 HOH HOH . J 7 HOH A 97 597 96 HOH HOH . J 7 HOH A 98 598 98 HOH HOH . J 7 HOH A 99 599 99 HOH HOH . J 7 HOH A 100 600 101 HOH HOH . J 7 HOH A 101 601 102 HOH HOH . J 7 HOH A 102 602 105 HOH HOH . J 7 HOH A 103 603 106 HOH HOH . J 7 HOH A 104 604 107 HOH HOH . J 7 HOH A 105 605 110 HOH HOH . J 7 HOH A 106 606 113 HOH HOH . J 7 HOH A 107 607 114 HOH HOH . J 7 HOH A 108 608 116 HOH HOH . J 7 HOH A 109 609 119 HOH HOH . J 7 HOH A 110 610 121 HOH HOH . J 7 HOH A 111 611 122 HOH HOH . J 7 HOH A 112 612 123 HOH HOH . J 7 HOH A 113 613 125 HOH HOH . J 7 HOH A 114 614 129 HOH HOH . J 7 HOH A 115 615 130 HOH HOH . J 7 HOH A 116 616 132 HOH HOH . J 7 HOH A 117 617 136 HOH HOH . J 7 HOH A 118 618 140 HOH HOH . J 7 HOH A 119 619 141 HOH HOH . J 7 HOH A 120 620 142 HOH HOH . J 7 HOH A 121 621 143 HOH HOH . J 7 HOH A 122 622 144 HOH HOH . J 7 HOH A 123 623 145 HOH HOH . J 7 HOH A 124 624 146 HOH HOH . J 7 HOH A 125 625 147 HOH HOH . J 7 HOH A 126 626 150 HOH HOH . J 7 HOH A 127 627 151 HOH HOH . J 7 HOH A 128 628 153 HOH HOH . J 7 HOH A 129 629 155 HOH HOH . J 7 HOH A 130 630 158 HOH HOH . J 7 HOH A 131 631 159 HOH HOH . J 7 HOH A 132 632 160 HOH HOH . J 7 HOH A 133 633 162 HOH HOH . J 7 HOH A 134 634 165 HOH HOH . J 7 HOH A 135 635 169 HOH HOH . J 7 HOH A 136 636 171 HOH HOH . J 7 HOH A 137 637 172 HOH HOH . J 7 HOH A 138 638 173 HOH HOH . J 7 HOH A 139 639 174 HOH HOH . J 7 HOH A 140 640 176 HOH HOH . J 7 HOH A 141 641 177 HOH HOH . J 7 HOH A 142 642 179 HOH HOH . J 7 HOH A 143 643 182 HOH HOH . J 7 HOH A 144 644 183 HOH HOH . J 7 HOH A 145 645 187 HOH HOH . J 7 HOH A 146 646 190 HOH HOH . J 7 HOH A 147 647 192 HOH HOH . J 7 HOH A 148 648 199 HOH HOH . J 7 HOH A 149 649 202 HOH HOH . J 7 HOH A 150 650 203 HOH HOH . J 7 HOH A 151 651 206 HOH HOH . J 7 HOH A 152 652 213 HOH HOH . J 7 HOH A 153 653 216 HOH HOH . J 7 HOH A 154 654 228 HOH HOH . J 7 HOH A 155 655 230 HOH HOH . J 7 HOH A 156 656 232 HOH HOH . J 7 HOH A 157 657 233 HOH HOH . J 7 HOH A 158 658 234 HOH HOH . J 7 HOH A 159 659 235 HOH HOH . J 7 HOH A 160 660 256 HOH HOH . J 7 HOH A 161 661 444 HOH HOH . J 7 HOH A 162 662 448 HOH HOH . J 7 HOH A 163 663 450 HOH HOH . J 7 HOH A 164 664 453 HOH HOH . J 7 HOH A 165 665 454 HOH HOH . J 7 HOH A 166 666 455 HOH HOH . J 7 HOH A 167 667 456 HOH HOH . J 7 HOH A 168 668 457 HOH HOH . J 7 HOH A 169 669 458 HOH HOH . J 7 HOH A 170 670 459 HOH HOH . J 7 HOH A 171 671 462 HOH HOH . J 7 HOH A 172 672 463 HOH HOH . J 7 HOH A 173 673 468 HOH HOH . J 7 HOH A 174 674 469 HOH HOH . J 7 HOH A 175 675 474 HOH HOH . J 7 HOH A 176 676 475 HOH HOH . J 7 HOH A 177 677 479 HOH HOH . J 7 HOH A 178 678 480 HOH HOH . K 7 HOH B 1 501 11 HOH HOH . K 7 HOH B 2 502 95 HOH HOH . K 7 HOH B 3 503 6 HOH HOH . K 7 HOH B 4 504 20 HOH HOH . K 7 HOH B 5 505 32 HOH HOH . K 7 HOH B 6 506 44 HOH HOH . K 7 HOH B 7 507 59 HOH HOH . K 7 HOH B 8 508 63 HOH HOH . K 7 HOH B 9 509 65 HOH HOH . K 7 HOH B 10 510 68 HOH HOH . K 7 HOH B 11 511 70 HOH HOH . K 7 HOH B 12 512 81 HOH HOH . K 7 HOH B 13 513 89 HOH HOH . K 7 HOH B 14 514 100 HOH HOH . K 7 HOH B 15 515 103 HOH HOH . K 7 HOH B 16 516 108 HOH HOH . K 7 HOH B 17 517 149 HOH HOH . K 7 HOH B 18 518 164 HOH HOH . K 7 HOH B 19 519 445 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -21.317 _atom_site.Cartn_y -39.146 _atom_site.Cartn_z 1.585 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 1 #