data_4YIH # _model_server_result.job_id zqIfOmScCGc6OlvnlukMhw _model_server_result.datetime_utc '2024-11-25 02:28:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":202}' # _entry.id 4YIH # _exptl.entry_id 4YIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 111.18 _cell.angle_beta 88.16 _cell.angle_gamma 104.7 _cell.entry_id 4YIH _cell.length_a 38.818 _cell.length_b 46.451 _cell.length_c 61.738 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 10 A ASP 10 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc2 A O ASP 12 A ASP 12 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc3 A OD1 ASP 145 A ASP 145 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc4 C MG MG . A MG 201 1_555 D O4 PO4 . A PO4 202 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.074 ? metalc ? metalc5 C MG MG . A MG 201 1_555 F O1 GOL . A GOL 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc6 C MG MG . A MG 201 1_555 J O HOH . A HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc7 B OD2 ASP 10 B ASP 10 1_555 G MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc8 B O ASP 12 B ASP 12 1_555 G MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc9 B OD1 ASP 145 B ASP 145 1_555 G MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc10 G MG MG . B MG 201 1_555 H O1 PO4 . B PO4 202 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.501 ? metalc ? metalc11 G MG MG . B MG 201 1_555 K O HOH . B HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 329 n n P O2 PO4 sing 330 n n P O3 PO4 sing 331 n n P O4 PO4 sing 332 n n # _atom_sites.entry_id 4YIH _atom_sites.fract_transf_matrix[1][1] 0.025761 _atom_sites.fract_transf_matrix[1][2] 0.006758 _atom_sites.fract_transf_matrix[1][3] 0.001761 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022257 _atom_sites.fract_transf_matrix[2][3] 0.008733 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 201 201 MG MG . D 3 PO4 A 1 202 202 PO4 PO4 . E 4 2O2 A 1 203 202 2O2 2O2 . F 5 GOL A 1 204 203 GOL GOL . G 2 MG B 1 201 201 MG MG . H 3 PO4 B 1 202 202 PO4 PO4 . I 4 2O2 B 1 203 202 2O2 2O2 . J 6 HOH A 1 301 407 HOH HOH . J 6 HOH A 2 302 382 HOH HOH . J 6 HOH A 3 303 396 HOH HOH . J 6 HOH A 4 304 333 HOH HOH . J 6 HOH A 5 305 415 HOH HOH . J 6 HOH A 6 306 383 HOH HOH . J 6 HOH A 7 307 339 HOH HOH . J 6 HOH A 8 308 358 HOH HOH . J 6 HOH A 9 309 380 HOH HOH . J 6 HOH A 10 310 308 HOH HOH . J 6 HOH A 11 311 335 HOH HOH . J 6 HOH A 12 312 365 HOH HOH . J 6 HOH A 13 313 355 HOH HOH . J 6 HOH A 14 314 338 HOH HOH . J 6 HOH A 15 315 413 HOH HOH . J 6 HOH A 16 316 372 HOH HOH . J 6 HOH A 17 317 399 HOH HOH . J 6 HOH A 18 318 367 HOH HOH . J 6 HOH A 19 319 305 HOH HOH . J 6 HOH A 20 320 392 HOH HOH . J 6 HOH A 21 321 344 HOH HOH . J 6 HOH A 22 322 403 HOH HOH . J 6 HOH A 23 323 398 HOH HOH . J 6 HOH A 24 324 320 HOH HOH . J 6 HOH A 25 325 371 HOH HOH . J 6 HOH A 26 326 416 HOH HOH . J 6 HOH A 27 327 313 HOH HOH . J 6 HOH A 28 328 303 HOH HOH . J 6 HOH A 29 329 379 HOH HOH . J 6 HOH A 30 330 316 HOH HOH . J 6 HOH A 31 331 302 HOH HOH . J 6 HOH A 32 332 332 HOH HOH . J 6 HOH A 33 333 346 HOH HOH . J 6 HOH A 34 334 314 HOH HOH . J 6 HOH A 35 335 318 HOH HOH . J 6 HOH A 36 336 375 HOH HOH . J 6 HOH A 37 337 310 HOH HOH . J 6 HOH A 38 338 330 HOH HOH . J 6 HOH A 39 339 325 HOH HOH . J 6 HOH A 40 340 393 HOH HOH . J 6 HOH A 41 341 304 HOH HOH . J 6 HOH A 42 342 311 HOH HOH . J 6 HOH A 43 343 342 HOH HOH . J 6 HOH A 44 344 319 HOH HOH . J 6 HOH A 45 345 363 HOH HOH . J 6 HOH A 46 346 386 HOH HOH . J 6 HOH A 47 347 327 HOH HOH . J 6 HOH A 48 348 340 HOH HOH . J 6 HOH A 49 349 331 HOH HOH . J 6 HOH A 50 350 409 HOH HOH . J 6 HOH A 51 351 377 HOH HOH . J 6 HOH A 52 352 307 HOH HOH . J 6 HOH A 53 353 317 HOH HOH . J 6 HOH A 54 354 385 HOH HOH . J 6 HOH A 55 355 301 HOH HOH . J 6 HOH A 56 356 309 HOH HOH . J 6 HOH A 57 357 324 HOH HOH . J 6 HOH A 58 358 354 HOH HOH . J 6 HOH A 59 359 391 HOH HOH . J 6 HOH A 60 360 351 HOH HOH . J 6 HOH A 61 361 353 HOH HOH . J 6 HOH A 62 362 323 HOH HOH . J 6 HOH A 63 363 418 HOH HOH . J 6 HOH A 64 364 412 HOH HOH . J 6 HOH A 65 365 384 HOH HOH . J 6 HOH A 66 366 328 HOH HOH . J 6 HOH A 67 367 376 HOH HOH . J 6 HOH A 68 368 341 HOH HOH . J 6 HOH A 69 369 359 HOH HOH . J 6 HOH A 70 370 326 HOH HOH . J 6 HOH A 71 371 334 HOH HOH . J 6 HOH A 72 372 368 HOH HOH . J 6 HOH A 73 373 347 HOH HOH . J 6 HOH A 74 374 345 HOH HOH . J 6 HOH A 75 375 357 HOH HOH . J 6 HOH A 76 376 414 HOH HOH . J 6 HOH A 77 377 378 HOH HOH . J 6 HOH A 78 378 306 HOH HOH . J 6 HOH A 79 379 388 HOH HOH . J 6 HOH A 80 380 336 HOH HOH . J 6 HOH A 81 381 337 HOH HOH . J 6 HOH A 82 382 349 HOH HOH . J 6 HOH A 83 383 419 HOH HOH . J 6 HOH A 84 384 361 HOH HOH . J 6 HOH A 85 385 381 HOH HOH . J 6 HOH A 86 386 389 HOH HOH . J 6 HOH A 87 387 420 HOH HOH . J 6 HOH A 88 388 322 HOH HOH . J 6 HOH A 89 389 348 HOH HOH . J 6 HOH A 90 390 315 HOH HOH . J 6 HOH A 91 391 370 HOH HOH . J 6 HOH A 92 392 369 HOH HOH . J 6 HOH A 93 393 350 HOH HOH . J 6 HOH A 94 394 312 HOH HOH . J 6 HOH A 95 395 421 HOH HOH . J 6 HOH A 96 396 329 HOH HOH . J 6 HOH A 97 397 402 HOH HOH . J 6 HOH A 98 398 405 HOH HOH . J 6 HOH A 99 399 352 HOH HOH . J 6 HOH A 100 400 406 HOH HOH . J 6 HOH A 101 401 373 HOH HOH . J 6 HOH A 102 402 374 HOH HOH . J 6 HOH A 103 403 350 HOH HOH . J 6 HOH A 104 404 387 HOH HOH . J 6 HOH A 105 405 397 HOH HOH . J 6 HOH A 106 406 410 HOH HOH . J 6 HOH A 107 407 343 HOH HOH . J 6 HOH A 108 408 390 HOH HOH . J 6 HOH A 109 409 411 HOH HOH . J 6 HOH A 110 410 364 HOH HOH . J 6 HOH A 111 411 356 HOH HOH . J 6 HOH A 112 412 360 HOH HOH . J 6 HOH A 113 413 404 HOH HOH . J 6 HOH A 114 414 417 HOH HOH . J 6 HOH A 115 415 394 HOH HOH . J 6 HOH A 116 416 400 HOH HOH . J 6 HOH A 117 417 395 HOH HOH . J 6 HOH A 118 418 351 HOH HOH . J 6 HOH A 119 419 366 HOH HOH . J 6 HOH A 120 420 408 HOH HOH . J 6 HOH A 121 421 362 HOH HOH . J 6 HOH A 122 422 401 HOH HOH . K 6 HOH B 1 301 349 HOH HOH . K 6 HOH B 2 302 342 HOH HOH . K 6 HOH B 3 303 334 HOH HOH . K 6 HOH B 4 304 330 HOH HOH . K 6 HOH B 5 305 362 HOH HOH . K 6 HOH B 6 306 337 HOH HOH . K 6 HOH B 7 307 344 HOH HOH . K 6 HOH B 8 308 322 HOH HOH . K 6 HOH B 9 309 336 HOH HOH . K 6 HOH B 10 310 310 HOH HOH . K 6 HOH B 11 311 326 HOH HOH . K 6 HOH B 12 312 361 HOH HOH . K 6 HOH B 13 313 314 HOH HOH . K 6 HOH B 14 314 327 HOH HOH . K 6 HOH B 15 315 359 HOH HOH . K 6 HOH B 16 316 309 HOH HOH . K 6 HOH B 17 317 333 HOH HOH . K 6 HOH B 18 318 304 HOH HOH . K 6 HOH B 19 319 335 HOH HOH . K 6 HOH B 20 320 301 HOH HOH . K 6 HOH B 21 321 302 HOH HOH . K 6 HOH B 22 322 341 HOH HOH . K 6 HOH B 23 323 331 HOH HOH . K 6 HOH B 24 324 303 HOH HOH . K 6 HOH B 25 325 325 HOH HOH . K 6 HOH B 26 326 321 HOH HOH . K 6 HOH B 27 327 369 HOH HOH . K 6 HOH B 28 328 346 HOH HOH . K 6 HOH B 29 329 339 HOH HOH . K 6 HOH B 30 330 355 HOH HOH . K 6 HOH B 31 331 353 HOH HOH . K 6 HOH B 32 332 329 HOH HOH . K 6 HOH B 33 333 320 HOH HOH . K 6 HOH B 34 334 363 HOH HOH . K 6 HOH B 35 335 317 HOH HOH . K 6 HOH B 36 336 332 HOH HOH . K 6 HOH B 37 337 323 HOH HOH . K 6 HOH B 38 338 308 HOH HOH . K 6 HOH B 39 339 306 HOH HOH . K 6 HOH B 40 340 328 HOH HOH . K 6 HOH B 41 341 364 HOH HOH . K 6 HOH B 42 342 307 HOH HOH . K 6 HOH B 43 343 305 HOH HOH . K 6 HOH B 44 344 315 HOH HOH . K 6 HOH B 45 345 312 HOH HOH . K 6 HOH B 46 346 319 HOH HOH . K 6 HOH B 47 347 368 HOH HOH . K 6 HOH B 48 348 357 HOH HOH . K 6 HOH B 49 349 311 HOH HOH . K 6 HOH B 50 350 360 HOH HOH . K 6 HOH B 51 351 352 HOH HOH . K 6 HOH B 52 352 347 HOH HOH . K 6 HOH B 53 353 366 HOH HOH . K 6 HOH B 54 354 340 HOH HOH . K 6 HOH B 55 355 321 HOH HOH . K 6 HOH B 56 356 345 HOH HOH . K 6 HOH B 57 357 343 HOH HOH . K 6 HOH B 58 358 365 HOH HOH . K 6 HOH B 59 359 358 HOH HOH . K 6 HOH B 60 360 348 HOH HOH . K 6 HOH B 61 361 354 HOH HOH . K 6 HOH B 62 362 313 HOH HOH . K 6 HOH B 63 363 356 HOH HOH . K 6 HOH B 64 364 316 HOH HOH . K 6 HOH B 65 365 318 HOH HOH . K 6 HOH B 66 366 338 HOH HOH . K 6 HOH B 67 367 324 HOH HOH . K 6 HOH B 68 368 367 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . B . H 3 8.314 -4.094 -24.5 0.5 35 ? P PO4 202 B 1 HETATM 2 O O1 PO4 . B . H 3 8.556 -4.987 -25.698 0.5 30.7 ? O1 PO4 202 B 1 HETATM 3 O O2 PO4 . B . H 3 9.205 -2.869 -24.629 0.5 31.42 ? O2 PO4 202 B 1 HETATM 4 O O3 PO4 . B . H 3 6.867 -3.739 -24.623 0.5 29.51 ? O3 PO4 202 B 1 HETATM 5 O O4 PO4 . B . H 3 8.713 -4.856 -23.241 0.5 26.66 ? O4 PO4 202 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #