data_4YIK # _model_server_result.job_id AjLUWELqMwUKHWU_oRbXuA _model_server_result.datetime_utc '2024-11-23 16:19:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":312}' # _entry.id 4YIK # _exptl.entry_id 4YIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YIK _cell.length_a 73.87 _cell.length_b 73.87 _cell.length_c 106.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YIK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 53.095 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 15 A ASP 41 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc2 A O ASP 17 A ASP 43 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 A OD1 ASP 150 A ASP 176 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc4 B MG MG . A MG 301 1_555 G OBG 2O2 . A 2O2 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.048 ? metalc ? metalc5 B MG MG . A MG 301 1_555 O O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc6 B MG MG . A MG 301 1_555 O O HOH . A HOH 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 306 n n C1 C2 PEG sing 307 n n C1 H11 PEG sing 308 n n C1 H12 PEG sing 309 n n O1 HO1 PEG sing 310 n n C2 O2 PEG sing 311 n n C2 H21 PEG sing 312 n n C2 H22 PEG sing 313 n n O2 C3 PEG sing 314 n n C3 C4 PEG sing 315 n n C3 H31 PEG sing 316 n n C3 H32 PEG sing 317 n n C4 O4 PEG sing 318 n n C4 H41 PEG sing 319 n n C4 H42 PEG sing 320 n n O4 HO4 PEG sing 321 n n # _atom_sites.entry_id 4YIK _atom_sites.fract_transf_matrix[1][1] 0.013537 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 301 MG MG . C 3 GOL A 1 302 302 GOL GOL . D 3 GOL A 1 303 303 GOL GOL . E 3 GOL A 1 304 304 GOL GOL . F 3 GOL A 1 305 305 GOL GOL . G 4 2O2 A 1 306 306 2O2 2O2 . H 5 TRS A 1 307 306 TRS TRS . I 6 PEG A 1 308 307 PEG PEG . J 6 PEG A 1 309 308 PEG PEG . K 6 PEG A 1 310 309 PEG PEG . L 6 PEG A 1 311 310 PEG PEG . M 6 PEG A 1 312 311 PEG PEG . N 7 PO4 A 1 313 312 PO4 PO4 . O 8 HOH A 1 401 578 HOH HOH . O 8 HOH A 2 402 660 HOH HOH . O 8 HOH A 3 403 573 HOH HOH . O 8 HOH A 4 404 560 HOH HOH . O 8 HOH A 5 405 640 HOH HOH . O 8 HOH A 6 406 556 HOH HOH . O 8 HOH A 7 407 515 HOH HOH . O 8 HOH A 8 408 409 HOH HOH . O 8 HOH A 9 409 598 HOH HOH . O 8 HOH A 10 410 487 HOH HOH . O 8 HOH A 11 411 580 HOH HOH . O 8 HOH A 12 412 513 HOH HOH . O 8 HOH A 13 413 423 HOH HOH . O 8 HOH A 14 414 604 HOH HOH . O 8 HOH A 15 415 581 HOH HOH . O 8 HOH A 16 416 596 HOH HOH . O 8 HOH A 17 417 526 HOH HOH . O 8 HOH A 18 418 523 HOH HOH . O 8 HOH A 19 419 422 HOH HOH . O 8 HOH A 20 420 656 HOH HOH . O 8 HOH A 21 421 472 HOH HOH . O 8 HOH A 22 422 441 HOH HOH . O 8 HOH A 23 423 584 HOH HOH . O 8 HOH A 24 424 537 HOH HOH . O 8 HOH A 25 425 546 HOH HOH . O 8 HOH A 26 426 554 HOH HOH . O 8 HOH A 27 427 576 HOH HOH . O 8 HOH A 28 428 647 HOH HOH . O 8 HOH A 29 429 662 HOH HOH . O 8 HOH A 30 430 599 HOH HOH . O 8 HOH A 31 431 454 HOH HOH . O 8 HOH A 32 432 518 HOH HOH . O 8 HOH A 33 433 438 HOH HOH . O 8 HOH A 34 434 544 HOH HOH . O 8 HOH A 35 435 519 HOH HOH . O 8 HOH A 36 436 489 HOH HOH . O 8 HOH A 37 437 588 HOH HOH . O 8 HOH A 38 438 619 HOH HOH . O 8 HOH A 39 439 511 HOH HOH . O 8 HOH A 40 440 533 HOH HOH . O 8 HOH A 41 441 601 HOH HOH . O 8 HOH A 42 442 574 HOH HOH . O 8 HOH A 43 443 471 HOH HOH . O 8 HOH A 44 444 440 HOH HOH . O 8 HOH A 45 445 458 HOH HOH . O 8 HOH A 46 446 525 HOH HOH . O 8 HOH A 47 447 499 HOH HOH . O 8 HOH A 48 448 447 HOH HOH . O 8 HOH A 49 449 531 HOH HOH . O 8 HOH A 50 450 597 HOH HOH . O 8 HOH A 51 451 408 HOH HOH . O 8 HOH A 52 452 587 HOH HOH . O 8 HOH A 53 453 467 HOH HOH . O 8 HOH A 54 454 459 HOH HOH . O 8 HOH A 55 455 480 HOH HOH . O 8 HOH A 56 456 495 HOH HOH . O 8 HOH A 57 457 632 HOH HOH . O 8 HOH A 58 458 446 HOH HOH . O 8 HOH A 59 459 410 HOH HOH . O 8 HOH A 60 460 514 HOH HOH . O 8 HOH A 61 461 508 HOH HOH . O 8 HOH A 62 462 431 HOH HOH . O 8 HOH A 63 463 582 HOH HOH . O 8 HOH A 64 464 492 HOH HOH . O 8 HOH A 65 465 439 HOH HOH . O 8 HOH A 66 466 543 HOH HOH . O 8 HOH A 67 467 420 HOH HOH . O 8 HOH A 68 468 583 HOH HOH . O 8 HOH A 69 469 414 HOH HOH . O 8 HOH A 70 470 479 HOH HOH . O 8 HOH A 71 471 592 HOH HOH . O 8 HOH A 72 472 457 HOH HOH . O 8 HOH A 73 473 566 HOH HOH . O 8 HOH A 74 474 577 HOH HOH . O 8 HOH A 75 475 461 HOH HOH . O 8 HOH A 76 476 413 HOH HOH . O 8 HOH A 77 477 429 HOH HOH . O 8 HOH A 78 478 490 HOH HOH . O 8 HOH A 79 479 434 HOH HOH . O 8 HOH A 80 480 575 HOH HOH . O 8 HOH A 81 481 421 HOH HOH . O 8 HOH A 82 482 418 HOH HOH . O 8 HOH A 83 483 484 HOH HOH . O 8 HOH A 84 484 532 HOH HOH . O 8 HOH A 85 485 433 HOH HOH . O 8 HOH A 86 486 424 HOH HOH . O 8 HOH A 87 487 430 HOH HOH . O 8 HOH A 88 488 428 HOH HOH . O 8 HOH A 89 489 455 HOH HOH . O 8 HOH A 90 490 405 HOH HOH . O 8 HOH A 91 491 485 HOH HOH . O 8 HOH A 92 492 407 HOH HOH . O 8 HOH A 93 493 516 HOH HOH . O 8 HOH A 94 494 507 HOH HOH . O 8 HOH A 95 495 501 HOH HOH . O 8 HOH A 96 496 590 HOH HOH . O 8 HOH A 97 497 579 HOH HOH . O 8 HOH A 98 498 473 HOH HOH . O 8 HOH A 99 499 448 HOH HOH . O 8 HOH A 100 500 426 HOH HOH . O 8 HOH A 101 501 506 HOH HOH . O 8 HOH A 102 502 443 HOH HOH . O 8 HOH A 103 503 628 HOH HOH . O 8 HOH A 104 504 464 HOH HOH . O 8 HOH A 105 505 527 HOH HOH . O 8 HOH A 106 506 427 HOH HOH . O 8 HOH A 107 507 594 HOH HOH . O 8 HOH A 108 508 645 HOH HOH . O 8 HOH A 109 509 510 HOH HOH . O 8 HOH A 110 510 445 HOH HOH . O 8 HOH A 111 511 412 HOH HOH . O 8 HOH A 112 512 453 HOH HOH . O 8 HOH A 113 513 550 HOH HOH . O 8 HOH A 114 514 444 HOH HOH . O 8 HOH A 115 515 476 HOH HOH . O 8 HOH A 116 516 539 HOH HOH . O 8 HOH A 117 517 500 HOH HOH . O 8 HOH A 118 518 450 HOH HOH . O 8 HOH A 119 519 589 HOH HOH . O 8 HOH A 120 520 644 HOH HOH . O 8 HOH A 121 521 466 HOH HOH . O 8 HOH A 122 522 502 HOH HOH . O 8 HOH A 123 523 602 HOH HOH . O 8 HOH A 124 524 553 HOH HOH . O 8 HOH A 125 525 536 HOH HOH . O 8 HOH A 126 526 612 HOH HOH . O 8 HOH A 127 527 494 HOH HOH . O 8 HOH A 128 528 625 HOH HOH . O 8 HOH A 129 529 547 HOH HOH . O 8 HOH A 130 530 549 HOH HOH . O 8 HOH A 131 531 474 HOH HOH . O 8 HOH A 132 532 483 HOH HOH . O 8 HOH A 133 533 425 HOH HOH . O 8 HOH A 134 534 419 HOH HOH . O 8 HOH A 135 535 437 HOH HOH . O 8 HOH A 136 536 557 HOH HOH . O 8 HOH A 137 537 451 HOH HOH . O 8 HOH A 138 538 402 HOH HOH . O 8 HOH A 139 539 488 HOH HOH . O 8 HOH A 140 540 585 HOH HOH . O 8 HOH A 141 541 404 HOH HOH . O 8 HOH A 142 542 468 HOH HOH . O 8 HOH A 143 543 624 HOH HOH . O 8 HOH A 144 544 442 HOH HOH . O 8 HOH A 145 545 462 HOH HOH . O 8 HOH A 146 546 456 HOH HOH . O 8 HOH A 147 547 452 HOH HOH . O 8 HOH A 148 548 586 HOH HOH . O 8 HOH A 149 549 415 HOH HOH . O 8 HOH A 150 550 600 HOH HOH . O 8 HOH A 151 551 403 HOH HOH . O 8 HOH A 152 552 416 HOH HOH . O 8 HOH A 153 553 411 HOH HOH . O 8 HOH A 154 554 463 HOH HOH . O 8 HOH A 155 555 496 HOH HOH . O 8 HOH A 156 556 505 HOH HOH . O 8 HOH A 157 557 432 HOH HOH . O 8 HOH A 158 558 651 HOH HOH . O 8 HOH A 159 559 465 HOH HOH . O 8 HOH A 160 560 637 HOH HOH . O 8 HOH A 161 561 503 HOH HOH . O 8 HOH A 162 562 615 HOH HOH . O 8 HOH A 163 563 663 HOH HOH . O 8 HOH A 164 564 649 HOH HOH . O 8 HOH A 165 565 622 HOH HOH . O 8 HOH A 166 566 498 HOH HOH . O 8 HOH A 167 567 436 HOH HOH . O 8 HOH A 168 568 642 HOH HOH . O 8 HOH A 169 569 475 HOH HOH . O 8 HOH A 170 570 493 HOH HOH . O 8 HOH A 171 571 653 HOH HOH . O 8 HOH A 172 572 481 HOH HOH . O 8 HOH A 173 573 435 HOH HOH . O 8 HOH A 174 574 469 HOH HOH . O 8 HOH A 175 575 401 HOH HOH . O 8 HOH A 176 576 548 HOH HOH . O 8 HOH A 177 577 621 HOH HOH . O 8 HOH A 178 578 478 HOH HOH . O 8 HOH A 179 579 542 HOH HOH . O 8 HOH A 180 580 646 HOH HOH . O 8 HOH A 181 581 524 HOH HOH . O 8 HOH A 182 582 641 HOH HOH . O 8 HOH A 183 583 406 HOH HOH . O 8 HOH A 184 584 635 HOH HOH . O 8 HOH A 185 585 460 HOH HOH . O 8 HOH A 186 586 417 HOH HOH . O 8 HOH A 187 587 540 HOH HOH . O 8 HOH A 188 588 631 HOH HOH . O 8 HOH A 189 589 638 HOH HOH . O 8 HOH A 190 590 477 HOH HOH . O 8 HOH A 191 591 509 HOH HOH . O 8 HOH A 192 592 551 HOH HOH . O 8 HOH A 193 593 520 HOH HOH . O 8 HOH A 194 594 652 HOH HOH . O 8 HOH A 195 595 616 HOH HOH . O 8 HOH A 196 596 627 HOH HOH . O 8 HOH A 197 597 529 HOH HOH . O 8 HOH A 198 598 657 HOH HOH . O 8 HOH A 199 599 603 HOH HOH . O 8 HOH A 200 600 595 HOH HOH . O 8 HOH A 201 601 497 HOH HOH . O 8 HOH A 202 602 528 HOH HOH . O 8 HOH A 203 603 545 HOH HOH . O 8 HOH A 204 604 535 HOH HOH . O 8 HOH A 205 605 634 HOH HOH . O 8 HOH A 206 606 541 HOH HOH . O 8 HOH A 207 607 512 HOH HOH . O 8 HOH A 208 608 654 HOH HOH . O 8 HOH A 209 609 449 HOH HOH . O 8 HOH A 210 610 538 HOH HOH . O 8 HOH A 211 611 658 HOH HOH . O 8 HOH A 212 612 606 HOH HOH . O 8 HOH A 213 613 610 HOH HOH . O 8 HOH A 214 614 614 HOH HOH . O 8 HOH A 215 615 470 HOH HOH . O 8 HOH A 216 616 571 HOH HOH . O 8 HOH A 217 617 618 HOH HOH . O 8 HOH A 218 618 633 HOH HOH . O 8 HOH A 219 619 661 HOH HOH . O 8 HOH A 220 620 593 HOH HOH . O 8 HOH A 221 621 522 HOH HOH . O 8 HOH A 222 622 630 HOH HOH . O 8 HOH A 223 623 569 HOH HOH . O 8 HOH A 224 624 650 HOH HOH . O 8 HOH A 225 625 555 HOH HOH . O 8 HOH A 226 626 629 HOH HOH . O 8 HOH A 227 627 530 HOH HOH . O 8 HOH A 228 628 636 HOH HOH . O 8 HOH A 229 629 567 HOH HOH . O 8 HOH A 230 630 504 HOH HOH . O 8 HOH A 231 631 626 HOH HOH . O 8 HOH A 232 632 611 HOH HOH . O 8 HOH A 233 633 643 HOH HOH . O 8 HOH A 234 634 561 HOH HOH . O 8 HOH A 235 635 562 HOH HOH . O 8 HOH A 236 636 605 HOH HOH . O 8 HOH A 237 637 620 HOH HOH . O 8 HOH A 238 638 639 HOH HOH . O 8 HOH A 239 639 563 HOH HOH . O 8 HOH A 240 640 564 HOH HOH . O 8 HOH A 241 641 491 HOH HOH . O 8 HOH A 242 642 591 HOH HOH . O 8 HOH A 243 643 568 HOH HOH . O 8 HOH A 244 644 623 HOH HOH . O 8 HOH A 245 645 608 HOH HOH . O 8 HOH A 246 646 517 HOH HOH . O 8 HOH A 247 647 607 HOH HOH . O 8 HOH A 248 648 613 HOH HOH . O 8 HOH A 249 649 521 HOH HOH . O 8 HOH A 250 650 572 HOH HOH . O 8 HOH A 251 651 617 HOH HOH . O 8 HOH A 252 652 552 HOH HOH . O 8 HOH A 253 653 482 HOH HOH . O 8 HOH A 254 654 486 HOH HOH . O 8 HOH A 255 655 655 HOH HOH . O 8 HOH A 256 656 659 HOH HOH . O 8 HOH A 257 657 565 HOH HOH . O 8 HOH A 258 658 609 HOH HOH . O 8 HOH A 259 659 534 HOH HOH . O 8 HOH A 260 660 559 HOH HOH . O 8 HOH A 261 661 558 HOH HOH . O 8 HOH A 262 662 648 HOH HOH . O 8 HOH A 263 663 570 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 PEG . . . M 6 -18.865 29.818 13.415 1 44.97 ? O2 PEG 312 A 1 HETATM 2 C C3 PEG . . . M 6 -17.802 29.07 12.834 1 44.75 ? C3 PEG 312 A 1 HETATM 3 C C4 PEG . . . M 6 -16.395 29.657 12.945 1 47.28 ? C4 PEG 312 A 1 HETATM 4 O O4 PEG . . . M 6 -16.275 31.05 12.585 1 50.34 ? O4 PEG 312 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #