data_4YJD
#
_model_server_result.job_id            ss7KrigzOmPosucu25He0A 
_model_server_result.datetime_utc      '2024-11-19 03:37:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yjd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    4YJD 
#
_exptl.entry_id    4YJD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YJD 
_cell.length_a            68.876 
_cell.length_b            91.703 
_cell.length_c            110.16 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YJD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     4YJD 
_atom_sites.fract_transf_matrix[1][1]    0.014519 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010905 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009078 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 401 2 FAD FAD . 
D 3 SO4 A 1 402 6 SO4 SO4 . 
E 2 FAD B 1 401 1 FAD FAD . 
F 3 SO4 B 1 402 3 SO4 SO4 . 
G 3 SO4 B 1 403 4 SO4 SO4 . 
H 4 HOH A 1 501 14 HOH HOH . 
H 4 HOH A 2 502 1 HOH HOH . 
H 4 HOH A 3 503 4 HOH HOH . 
H 4 HOH A 4 504 5 HOH HOH . 
H 4 HOH A 5 505 8 HOH HOH . 
H 4 HOH A 6 506 11 HOH HOH . 
H 4 HOH A 7 507 12 HOH HOH . 
I 4 HOH B 1 501 2 HOH HOH . 
I 4 HOH B 2 502 3 HOH HOH . 
I 4 HOH B 3 503 6 HOH HOH . 
I 4 HOH B 4 504 7 HOH HOH . 
I 4 HOH B 5 505 9 HOH HOH . 
I 4 HOH B 6 506 10 HOH HOH . 
I 4 HOH B 7 507 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 -19.269 -8.202 22.79 1 27.13 ? PA FAD 401 A 1 
HETATM 2 O O1A FAD . . . C 2 -20.481 -7.359 22.809 1 22.57 ? O1A FAD 401 A 1 
HETATM 3 O O2A FAD . . . C 2 -19.414 -9.67 22.617 1 25.69 ? O2A FAD 401 A 1 
HETATM 4 O O5B FAD . . . C 2 -18.396 -7.918 24.094 1 26.38 ? O5B FAD 401 A 1 
HETATM 5 C C5B FAD . . . C 2 -18.324 -6.544 24.492 1 24.68 ? C5B FAD 401 A 1 
HETATM 6 C C4B FAD . . . C 2 -17.645 -6.401 25.869 1 25.14 ? C4B FAD 401 A 1 
HETATM 7 O O4B FAD . . . C 2 -17.29 -5.041 26.149 1 25.55 ? O4B FAD 401 A 1 
HETATM 8 C C3B FAD . . . C 2 -18.609 -6.791 26.979 1 24.93 ? C3B FAD 401 A 1 
HETATM 9 O O3B FAD . . . C 2 -17.888 -7.423 28.042 1 19.71 ? O3B FAD 401 A 1 
HETATM 10 C C2B FAD . . . C 2 -19.152 -5.454 27.438 1 27.57 ? C2B FAD 401 A 1 
HETATM 11 O O2B FAD . . . C 2 -19.701 -5.515 28.742 1 26.54 ? O2B FAD 401 A 1 
HETATM 12 C C1B FAD . . . C 2 -17.854 -4.689 27.422 1 27.75 ? C1B FAD 401 A 1 
HETATM 13 N N9A FAD . . . C 2 -17.961 -3.234 27.574 1 25.95 ? N9A FAD 401 A 1 
HETATM 14 C C8A FAD . . . C 2 -18.397 -2.348 26.647 1 33.05 ? C8A FAD 401 A 1 
HETATM 15 N N7A FAD . . . C 2 -18.335 -1.061 27.119 1 26.54 ? N7A FAD 401 A 1 
HETATM 16 C C5A FAD . . . C 2 -17.819 -1.132 28.373 1 24.83 ? C5A FAD 401 A 1 
HETATM 17 C C6A FAD . . . C 2 -17.453 -0.186 29.432 1 27.78 ? C6A FAD 401 A 1 
HETATM 18 N N6A FAD . . . C 2 -17.653 1.125 29.253 1 31.78 ? N6A FAD 401 A 1 
HETATM 19 N N1A FAD . . . C 2 -16.952 -0.663 30.603 1 31.57 ? N1A FAD 401 A 1 
HETATM 20 C C2A FAD . . . C 2 -16.756 -1.972 30.791 1 26.61 ? C2A FAD 401 A 1 
HETATM 21 N N3A FAD . . . C 2 -17.058 -2.884 29.867 1 27.86 ? N3A FAD 401 A 1 
HETATM 22 C C4A FAD . . . C 2 -17.576 -2.55 28.665 1 28.7 ? C4A FAD 401 A 1 
HETATM 23 N N1 FAD . . . C 2 -20.348 -13.457 14.232 1 29.33 ? N1 FAD 401 A 1 
HETATM 24 C C2 FAD . . . C 2 -19.842 -14.567 13.688 1 31.38 ? C2 FAD 401 A 1 
HETATM 25 O O2 FAD . . . C 2 -18.619 -14.586 13.413 1 31.69 ? O2 FAD 401 A 1 
HETATM 26 N N3 FAD . . . C 2 -20.615 -15.644 13.42 1 37.72 ? N3 FAD 401 A 1 
HETATM 27 C C4 FAD . . . C 2 -21.934 -15.678 13.68 1 28.58 ? C4 FAD 401 A 1 
HETATM 28 O O4 FAD . . . C 2 -22.646 -16.665 13.466 1 27.07 ? O4 FAD 401 A 1 
HETATM 29 C C4X FAD . . . C 2 -22.551 -14.49 14.229 1 29.26 ? C4X FAD 401 A 1 
HETATM 30 N N5 FAD . . . C 2 -23.861 -14.466 14.474 1 28.73 ? N5 FAD 401 A 1 
HETATM 31 C C5X FAD . . . C 2 -24.408 -13.345 14.986 1 32.39 ? C5X FAD 401 A 1 
HETATM 32 C C6 FAD . . . C 2 -25.768 -13.342 15.264 1 32.12 ? C6 FAD 401 A 1 
HETATM 33 C C7 FAD . . . C 2 -26.334 -12.216 15.819 1 34.85 ? C7 FAD 401 A 1 
HETATM 34 C C7M FAD . . . C 2 -27.808 -12.19 16.11 1 38.09 ? C7M FAD 401 A 1 
HETATM 35 C C8 FAD . . . C 2 -25.499 -11.037 16.127 1 30.02 ? C8 FAD 401 A 1 
HETATM 36 C C8M FAD . . . C 2 -26.133 -9.816 16.713 1 37.94 ? C8M FAD 401 A 1 
HETATM 37 C C9 FAD . . . C 2 -24.14 -11.039 15.877 1 31.8 ? C9 FAD 401 A 1 
HETATM 38 C C9A FAD . . . C 2 -23.557 -12.163 15.319 1 34.74 ? C9A FAD 401 A 1 
HETATM 39 N N10 FAD . . . C 2 -22.177 -12.196 15.044 1 30.06 ? N10 FAD 401 A 1 
HETATM 40 C C10 FAD . . . C 2 -21.655 -13.356 14.499 1 28.88 ? C10 FAD 401 A 1 
HETATM 41 C C1' FAD . . . C 2 -21.276 -11.081 15.326 1 30.73 ? C1' FAD 401 A 1 
HETATM 42 C C2' FAD . . . C 2 -20.686 -11.235 16.743 1 28.64 ? C2' FAD 401 A 1 
HETATM 43 O O2' FAD . . . C 2 -21.692 -11.47 17.773 1 25.13 ? O2' FAD 401 A 1 
HETATM 44 C C3' FAD . . . C 2 -19.861 -10.01 17.112 1 25.5 ? C3' FAD 401 A 1 
HETATM 45 O O3' FAD . . . C 2 -18.998 -9.614 16.027 1 25.38 ? O3' FAD 401 A 1 
HETATM 46 C C4' FAD . . . C 2 -19.017 -10.226 18.36 1 21.61 ? C4' FAD 401 A 1 
HETATM 47 O O4' FAD . . . C 2 -19.772 -10.88 19.359 1 20.55 ? O4' FAD 401 A 1 
HETATM 48 C C5' FAD . . . C 2 -18.511 -8.921 18.953 1 21.54 ? C5' FAD 401 A 1 
HETATM 49 O O5' FAD . . . C 2 -17.534 -9.25 19.946 1 23.09 ? O5' FAD 401 A 1 
HETATM 50 P P FAD . . . C 2 -17.05 -8.132 20.982 1 24 ? P FAD 401 A 1 
HETATM 51 O O1P FAD . . . C 2 -16.473 -7.065 20.114 1 22.14 ? O1P FAD 401 A 1 
HETATM 52 O O2P FAD . . . C 2 -16.301 -8.838 22.096 1 25.44 ? O2P FAD 401 A 1 
HETATM 53 O O3P FAD . . . C 2 -18.331 -7.48 21.653 1 23.43 ? O3P FAD 401 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#